Wall clock time and date at job start Wed Apr 1 2020 04:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.46744 * 2 1 4 4 C 1.46497 * 120.00153 * 270.00275 * 3 2 1 5 5 C 1.50702 * 109.47057 * 270.00013 * 4 3 2 6 6 H 1.07998 * 119.99647 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99787 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47248 * 59.99833 * 9 7 5 11 11 H 1.48500 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46827 * 299.99942 * 9 7 5 13 13 C 1.34778 * 119.99648 * 90.00094 * 3 2 1 14 14 O 1.21282 * 119.99976 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00250 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47150 * 179.97438 * 15 13 3 17 17 C 1.48558 * 111.00083 * 174.70602 * 16 15 13 18 18 C 1.54387 * 104.59689 * 159.03951 * 17 16 15 19 19 H 1.09006 * 110.40451 * 95.08578 * 18 17 16 20 20 C 1.52997 * 110.32569 * 217.25119 * 18 17 16 21 21 C 1.54259 * 105.05904 * 336.15277 * 18 17 16 22 22 H 1.09004 * 110.31764 * 241.10544 * 21 18 17 23 23 N 1.46494 * 110.32792 * 118.89548 * 21 18 17 24 24 C 1.34780 * 120.00253 * 154.99824 * 23 21 18 25 25 O 1.21278 * 119.99513 * 0.02562 * 24 23 21 26 26 C 1.50694 * 119.99857 * 179.97438 * 24 23 21 27 27 F 1.39904 * 109.46988 * 184.99950 * 26 24 23 28 28 F 1.39905 * 109.47385 * 304.99771 * 26 24 23 29 29 C 1.48561 * 111.00239 * 290.12543 * 16 15 13 30 30 H 1.09005 * 109.46462 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47222 * 299.99303 * 1 2 3 32 32 H 1.09000 * 109.47614 * 59.99893 * 1 2 3 33 33 H 1.09003 * 109.47222 * 240.00696 * 2 1 3 34 34 H 1.08996 * 109.47261 * 119.99746 * 2 1 3 35 35 H 1.09001 * 109.46892 * 29.99989 * 4 3 2 36 36 H 1.08998 * 109.47179 * 150.00132 * 4 3 2 37 37 H 0.96993 * 119.99351 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.47276 * 59.99544 * 15 13 3 39 39 H 1.08997 * 109.47311 * 300.00009 * 15 13 3 40 40 H 1.09000 * 110.41322 * 40.26590 * 17 16 15 41 41 H 1.09004 * 110.41245 * 277.81947 * 17 16 15 42 42 H 1.09002 * 109.47153 * 175.63637 * 20 18 17 43 43 H 1.09001 * 109.46832 * 55.63828 * 20 18 17 44 44 H 1.09004 * 109.47261 * 295.63810 * 20 18 17 45 45 H 0.97006 * 119.99828 * 334.99741 * 23 21 18 46 46 H 1.09005 * 109.47556 * 64.99957 * 26 24 23 47 47 H 1.08998 * 110.40848 * 82.17987 * 29 16 15 48 48 H 1.08997 * 110.51263 * 319.78737 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3425 1.2305 -1.0962 7 6 4.1488 2.3900 -2.8780 8 7 3.3487 3.1261 -3.6181 9 14 5.9129 2.0960 -3.4177 10 1 6.1401 0.6393 -3.5949 11 1 6.1603 2.7962 -4.7036 12 1 6.8407 2.6194 -2.3831 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1603 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2058 3.5888 17 6 1.9563 1.5847 4.8910 18 6 2.8047 2.3487 5.9303 19 1 2.2262 3.1614 6.3696 20 6 3.2934 1.3947 7.0220 21 6 4.0010 2.9114 5.1354 22 1 4.9364 2.5078 5.5231 23 7 4.0115 4.3749 5.1997 24 6 5.1676 5.0483 5.0370 25 8 6.1991 4.4427 4.8370 26 6 5.1783 6.5538 5.1026 27 9 6.4588 7.0250 4.7934 28 9 4.2578 7.0672 4.1825 29 6 3.7749 2.4400 3.6829 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.5815 1.6878 -2.0283 36 1 2.0953 3.1412 -1.1383 37 1 3.6746 3.5159 -4.4443 38 1 2.6229 0.4187 2.5298 39 1 0.9445 1.0113 2.5303 40 1 2.2175 0.5265 4.8911 41 1 0.8940 1.7151 5.0976 42 1 3.9531 1.9308 7.7043 43 1 3.8373 0.5679 6.5652 44 1 2.4379 1.0058 7.5743 45 1 3.1864 4.8593 5.3593 46 1 4.9055 6.8758 6.1076 47 1 4.0819 3.2142 2.9798 48 1 4.3223 1.5167 3.4933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205700985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:40 Heat of formation + Delta-G solvation = -159.073415 kcal Electronic energy + Delta-G solvation = -32028.446279 eV Core-core repulsion = 27368.472028 eV Total energy + Delta-G solvation = -4659.974251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.27505 -47.30680 -40.44670 -39.25263 -38.22009 -35.28298 -34.63730 -33.09791 -32.67348 -30.08704 -29.77959 -28.47331 -27.34397 -26.61014 -24.76567 -23.02962 -22.62814 -21.66314 -20.77096 -20.67891 -18.51180 -18.22693 -17.95037 -17.64909 -16.75780 -16.43435 -16.21710 -15.93252 -15.64313 -15.11241 -15.02705 -14.57371 -14.35578 -14.09346 -14.00796 -13.86941 -13.62041 -13.39150 -13.36071 -13.24486 -12.85426 -12.74375 -12.57106 -12.33524 -12.25674 -12.09617 -11.96347 -11.76260 -11.60053 -11.30700 -11.21139 -11.12550 -11.04219 -10.88944 -10.68911 -10.49169 -10.11761 -10.08231 -9.61324 -9.37135 -8.92295 -8.39474 -8.35416 -7.61506 -6.00701 -4.05374 1.96248 2.43894 3.34623 3.39531 3.41718 3.48855 3.60426 3.64651 3.89970 4.12183 4.28101 4.33892 4.38794 4.49048 4.53463 4.70390 4.94383 5.12295 5.15647 5.20705 5.25411 5.28406 5.33940 5.37038 5.46540 5.49972 5.53535 5.60432 5.65199 5.74395 5.79421 5.85310 6.01533 6.09430 6.23187 6.28011 6.47574 6.77907 6.82389 7.03966 7.14309 7.49269 7.59655 7.69039 7.95991 8.27450 8.47343 8.94329 9.17055 9.59894 11.07276 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.003656 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.062745 B = 7657.801897 C = 9948.285710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.026 3.974 16 N -0.488 5.488 17 C 0.033 3.967 18 C -0.100 4.100 19 H 0.089 0.911 20 C -0.144 4.144 21 C 0.144 3.856 22 H 0.101 0.899 23 N -0.696 5.696 24 C 0.473 3.527 25 O -0.502 6.502 26 C 0.259 3.741 27 F -0.177 7.177 28 F -0.183 7.183 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.408 0.592 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -2.983 23.830 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.130 3.870 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.106 4.106 16 N -0.212 5.212 17 C -0.095 4.095 18 C -0.119 4.119 19 H 0.107 0.893 20 C -0.201 4.201 21 C 0.039 3.961 22 H 0.119 0.881 23 N -0.349 5.349 24 C 0.254 3.746 25 O -0.376 6.376 26 C 0.201 3.799 27 F -0.158 7.158 28 F -0.164 7.164 29 C -0.106 4.106 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.244 0.756 46 H 0.151 0.849 47 H 0.124 0.876 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.586 -2.186 23.335 23.881 hybrid contribution 0.942 -0.732 -0.490 1.289 sum -3.644 -2.917 22.845 23.317 Atomic orbital electron populations 1.22223 0.96816 1.01301 1.02365 1.21395 0.93492 0.84394 1.02473 1.48255 1.64208 1.13134 1.07706 1.19228 0.96109 0.93627 0.78047 1.21386 0.96962 1.31933 1.06223 0.92694 1.24916 0.97742 0.94905 0.96406 1.69920 1.35697 1.33401 1.14340 0.86593 0.84976 0.78194 0.77888 1.20293 1.21137 1.20152 1.20058 0.79048 0.87136 0.84651 1.90671 1.44652 1.17638 1.86805 1.22279 1.02493 0.94418 0.91385 1.65205 1.14796 1.40454 1.00730 1.23275 1.00398 0.96666 0.89184 1.22177 0.95450 0.98751 0.95570 0.89315 1.21847 1.01415 0.99049 0.97822 1.21931 0.99553 0.78835 0.95793 0.88088 1.45887 1.09708 1.07599 1.71666 1.21086 0.85085 0.89808 0.78653 1.90826 1.32059 1.68727 1.45945 1.21602 0.74269 0.90357 0.93629 1.93067 1.39319 1.88776 1.94626 1.93112 1.65646 1.88034 1.69596 1.23656 0.88328 1.01986 0.96607 0.92264 0.93101 0.91980 0.90000 0.92087 0.95139 0.93929 0.92690 0.92313 0.88407 0.93326 0.89618 0.92180 0.92219 0.91885 0.75607 0.84852 0.87584 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.66 2.46 -175.06 -0.43 -13.09 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 6 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.51 10.50 7.48 -10.99 -0.08 10.42 16 14 O -0.52 -13.26 14.42 5.56 0.08 -13.18 16 15 C 0.03 0.38 3.85 -4.98 -0.02 0.36 16 16 N -0.49 -6.72 5.06 -231.41 -1.17 -7.89 16 17 C 0.03 0.30 6.03 -2.18 -0.01 0.29 16 18 C -0.10 -0.78 3.42 -89.24 -0.30 -1.08 16 19 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 20 C -0.14 -0.88 8.92 37.16 0.33 -0.54 16 21 C 0.14 1.58 3.06 -66.55 -0.20 1.38 16 22 H 0.10 1.15 7.13 -51.93 -0.37 0.78 16 23 N -0.70 -7.33 5.06 -52.47 -0.27 -7.59 16 24 C 0.47 6.00 7.63 -10.99 -0.08 5.91 16 25 O -0.50 -8.49 16.27 5.56 0.09 -8.40 16 26 C 0.26 2.64 5.72 36.00 0.21 2.84 16 27 F -0.18 -2.34 16.95 2.25 0.04 -2.30 16 28 F -0.18 -2.26 17.32 2.25 0.04 -2.22 16 29 C 0.02 0.34 5.51 -2.18 -0.01 0.33 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 0.78 7.14 -51.93 -0.37 0.41 16 39 H 0.10 1.21 7.18 -51.93 -0.37 0.83 16 40 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.41 3.29 8.36 -40.82 -0.34 2.95 16 46 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.11 2.09 6.82 -51.93 -0.35 1.74 16 48 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -37.48 399.58 -7.60 -45.08 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.45 Total: -0.07 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -0.27 Total: 12.52 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -1.13 Total: -54.90 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.17 Total: -21.58 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.53 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.48 -7.60 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205700985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.992 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds