Wall clock time and date at job start Wed Apr 1 2020 04:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.46744 * 2 1 4 4 C 1.46497 * 120.00153 * 270.00275 * 3 2 1 5 5 C 1.50702 * 109.47057 * 270.00013 * 4 3 2 6 6 H 1.07998 * 119.99647 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99787 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47248 * 59.99833 * 9 7 5 11 11 H 1.48500 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46827 * 299.99942 * 9 7 5 13 13 C 1.34778 * 119.99648 * 90.00094 * 3 2 1 14 14 O 1.21282 * 119.99976 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00250 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47150 * 179.97438 * 15 13 3 17 17 C 1.48558 * 111.00083 * 174.70602 * 16 15 13 18 18 C 1.54387 * 104.59689 * 159.03951 * 17 16 15 19 19 H 1.09006 * 110.40451 * 95.08578 * 18 17 16 20 20 C 1.52997 * 110.32569 * 217.25119 * 18 17 16 21 21 C 1.54259 * 105.05904 * 336.15277 * 18 17 16 22 22 H 1.09004 * 110.31764 * 241.10544 * 21 18 17 23 23 N 1.46494 * 110.32792 * 118.89548 * 21 18 17 24 24 C 1.34780 * 120.00253 * 154.99824 * 23 21 18 25 25 O 1.21278 * 119.99513 * 0.02562 * 24 23 21 26 26 C 1.50694 * 119.99857 * 179.97438 * 24 23 21 27 27 F 1.39904 * 109.46988 * 184.99950 * 26 24 23 28 28 F 1.39905 * 109.47385 * 304.99771 * 26 24 23 29 29 C 1.48561 * 111.00239 * 290.12543 * 16 15 13 30 30 H 1.09005 * 109.46462 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47222 * 299.99303 * 1 2 3 32 32 H 1.09000 * 109.47614 * 59.99893 * 1 2 3 33 33 H 1.09003 * 109.47222 * 240.00696 * 2 1 3 34 34 H 1.08996 * 109.47261 * 119.99746 * 2 1 3 35 35 H 1.09001 * 109.46892 * 29.99989 * 4 3 2 36 36 H 1.08998 * 109.47179 * 150.00132 * 4 3 2 37 37 H 0.96993 * 119.99351 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.47276 * 59.99544 * 15 13 3 39 39 H 1.08997 * 109.47311 * 300.00009 * 15 13 3 40 40 H 1.09000 * 110.41322 * 40.26590 * 17 16 15 41 41 H 1.09004 * 110.41245 * 277.81947 * 17 16 15 42 42 H 1.09002 * 109.47153 * 175.63637 * 20 18 17 43 43 H 1.09001 * 109.46832 * 55.63828 * 20 18 17 44 44 H 1.09004 * 109.47261 * 295.63810 * 20 18 17 45 45 H 0.97006 * 119.99828 * 334.99741 * 23 21 18 46 46 H 1.09005 * 109.47556 * 64.99957 * 26 24 23 47 47 H 1.08998 * 110.40848 * 82.17987 * 29 16 15 48 48 H 1.08997 * 110.51263 * 319.78737 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3425 1.2305 -1.0962 7 6 4.1488 2.3900 -2.8780 8 7 3.3487 3.1261 -3.6181 9 14 5.9129 2.0960 -3.4177 10 1 6.1401 0.6393 -3.5949 11 1 6.1603 2.7962 -4.7036 12 1 6.8407 2.6194 -2.3831 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1603 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2058 3.5888 17 6 1.9563 1.5847 4.8910 18 6 2.8047 2.3487 5.9303 19 1 2.2262 3.1614 6.3696 20 6 3.2934 1.3947 7.0220 21 6 4.0010 2.9114 5.1354 22 1 4.9364 2.5078 5.5231 23 7 4.0115 4.3749 5.1997 24 6 5.1676 5.0483 5.0370 25 8 6.1991 4.4427 4.8370 26 6 5.1783 6.5538 5.1026 27 9 6.4588 7.0250 4.7934 28 9 4.2578 7.0672 4.1825 29 6 3.7749 2.4400 3.6829 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.5815 1.6878 -2.0283 36 1 2.0953 3.1412 -1.1383 37 1 3.6746 3.5159 -4.4443 38 1 2.6229 0.4187 2.5298 39 1 0.9445 1.0113 2.5303 40 1 2.2175 0.5265 4.8911 41 1 0.8940 1.7151 5.0976 42 1 3.9531 1.9308 7.7043 43 1 3.8373 0.5679 6.5652 44 1 2.4379 1.0058 7.5743 45 1 3.1864 4.8593 5.3593 46 1 4.9055 6.8758 6.1076 47 1 4.0819 3.2142 2.9798 48 1 4.3223 1.5167 3.4933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205700985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:33 Heat of formation + Delta-G solvation = -188.540975 kcal Electronic energy + Delta-G solvation = -32029.724088 eV Core-core repulsion = 27368.472028 eV Total energy + Delta-G solvation = -4661.252060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.20728 -48.26105 -41.48008 -40.65584 -39.39623 -36.92509 -35.73763 -34.93307 -33.83792 -31.63047 -30.75198 -29.82630 -28.48847 -27.94431 -25.85370 -24.71536 -23.98289 -22.81895 -21.73280 -21.51988 -19.80265 -19.38115 -18.84606 -18.65705 -18.59362 -17.92931 -17.49592 -17.26657 -16.69217 -16.64110 -16.23767 -16.00157 -15.55446 -15.38610 -15.06881 -15.03180 -14.68009 -14.59121 -14.45325 -14.41375 -14.05655 -13.87553 -13.70209 -13.46250 -13.32082 -13.26034 -13.23316 -13.17472 -13.01781 -12.70272 -12.64950 -12.48284 -12.37946 -12.16132 -11.87516 -11.85628 -11.76601 -11.70522 -11.11703 -10.67860 -10.54946 -10.32951 -9.47048 -9.40984 -8.25682 -6.40478 0.95637 1.30581 1.35874 1.42474 1.57097 1.87969 2.22606 2.38167 2.88279 3.01466 3.03528 3.04637 3.43723 3.50627 3.56531 3.73068 3.77064 3.99990 4.08469 4.19658 4.22527 4.31905 4.35606 4.45732 4.55247 4.58168 4.65854 4.74497 4.82540 4.90937 4.93444 4.99626 5.04752 5.09073 5.15265 5.20084 5.29470 5.39562 5.41553 5.55421 5.72287 5.83938 5.93439 6.04518 6.14724 6.67659 6.79330 6.83879 7.26192 7.55075 8.80935 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.003656 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.062745 B = 7657.801897 C = 9948.285710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.257 1.257 11 H -0.275 1.275 12 H -0.284 1.284 13 C 0.492 3.508 14 O -0.582 6.582 15 C 0.041 3.959 16 N -0.506 5.506 17 C 0.034 3.966 18 C -0.087 4.087 19 H 0.109 0.891 20 C -0.139 4.139 21 C 0.146 3.854 22 H 0.095 0.905 23 N -0.683 5.683 24 C 0.465 3.535 25 O -0.555 6.555 26 C 0.259 3.741 27 F -0.197 7.197 28 F -0.197 7.197 29 C 0.024 3.976 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.021 0.979 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.422 0.578 46 H 0.203 0.797 47 H 0.046 0.954 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -5.065 26.787 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.145 3.855 5 C -0.581 4.581 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.787 3.213 10 H -0.181 1.181 11 H -0.200 1.200 12 H -0.210 1.210 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.090 4.090 16 N -0.230 5.230 17 C -0.092 4.092 18 C -0.106 4.106 19 H 0.127 0.873 20 C -0.196 4.196 21 C 0.040 3.960 22 H 0.113 0.887 23 N -0.335 5.335 24 C 0.247 3.753 25 O -0.432 6.432 26 C 0.202 3.798 27 F -0.178 7.178 28 F -0.178 7.178 29 C -0.105 4.105 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.260 0.740 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.892 -4.316 26.320 27.315 hybrid contribution 1.265 -0.088 -1.428 1.910 sum -4.627 -4.404 24.892 25.699 Atomic orbital electron populations 1.22145 0.94317 1.03525 1.01749 1.21742 0.95506 0.81295 1.03706 1.48299 1.64364 1.15120 1.06150 1.18611 0.94980 0.91339 0.80590 1.21668 0.98018 1.32007 1.06452 0.93299 1.25816 1.02165 0.94493 0.96477 1.70037 1.37712 1.34114 1.14777 0.85552 0.79197 0.79211 0.77361 1.18129 1.19982 1.21021 1.21279 0.77440 0.86765 0.86443 1.90645 1.47119 1.20559 1.87838 1.22195 1.04846 0.93977 0.87959 1.65121 1.13627 1.41673 1.02590 1.23447 1.01848 0.97456 0.86499 1.22189 0.93618 0.99502 0.95286 0.87260 1.21827 1.02234 0.98400 0.97187 1.21951 1.01095 0.79036 0.93878 0.88690 1.45865 1.09766 1.07716 1.70151 1.21666 0.84818 0.91136 0.77667 1.90795 1.33880 1.70085 1.48457 1.22160 0.73084 0.88467 0.96053 1.93020 1.40959 1.88826 1.94976 1.93081 1.66056 1.87988 1.70688 1.23451 0.89439 0.99928 0.97673 0.88507 0.91825 0.94522 0.91316 0.88285 0.96079 0.98969 0.92379 0.90224 0.84927 0.91631 0.87366 0.91844 0.92690 0.89793 0.73998 0.78023 0.93539 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 2 C 0.10 3.02 5.93 86.38 0.51 3.53 16 3 N -0.61 -26.28 2.46 -826.14 -2.03 -28.31 16 4 C 0.27 14.94 5.16 85.63 0.44 15.38 16 5 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 9 Si 0.96 47.13 29.54 68.60 2.03 49.15 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 13 C 0.49 20.97 7.48 87.66 0.66 21.62 16 14 O -0.58 -31.55 14.42 -3.04 -0.04 -31.59 16 15 C 0.04 1.13 3.85 85.56 0.33 1.46 16 16 N -0.51 -13.20 5.06 -886.05 -4.48 -17.68 16 17 C 0.03 0.50 6.03 86.45 0.52 1.02 16 18 C -0.09 -1.07 3.42 -9.90 -0.03 -1.10 16 19 H 0.11 0.95 7.67 -2.38 -0.02 0.93 16 20 C -0.14 -1.16 8.92 71.98 0.64 -0.52 16 21 C 0.15 3.11 3.06 45.89 0.14 3.25 16 22 H 0.10 2.17 7.13 -2.38 -0.02 2.15 16 23 N -0.68 -14.05 5.06 -438.30 -2.22 -16.27 16 24 C 0.46 12.00 7.63 87.65 0.67 12.67 16 25 O -0.55 -19.74 16.27 -3.02 -0.05 -19.79 16 26 C 0.26 5.09 5.72 71.23 0.41 5.50 16 27 F -0.20 -5.28 16.95 44.97 0.76 -4.52 16 28 F -0.20 -4.88 17.32 44.97 0.78 -4.10 16 29 C 0.02 0.75 5.51 86.45 0.48 1.22 16 30 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.10 2.25 6.44 -2.39 -0.02 2.23 16 35 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 36 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.08 1.87 7.14 -2.38 -0.02 1.86 16 39 H 0.13 2.72 7.18 -2.39 -0.02 2.70 16 40 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 44 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.42 6.18 8.36 -92.70 -0.77 5.41 16 46 H 0.20 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.05 1.99 6.82 -2.39 -0.02 1.97 16 48 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 Total: -1.00 -91.66 399.58 1.43 -90.23 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.21 Total: 11.10 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.20 Total: 29.59 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -8.45 Total: -120.07 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.09 Total: -51.38 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 1.54 Total: -8.62 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -91.66 1.43 -90.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205700985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.313 kcal (2) G-P(sol) polarization free energy of solvation -91.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds