Wall clock time and date at job start Wed Apr 1 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21281 * 120.00142 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00021 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47092 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99755 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.50081 * 325.00124 * 17 16 15 19 19 C 1.53042 * 109.49470 * 204.93772 * 17 16 15 20 20 C 1.53048 * 109.53402 * 178.68519 * 19 17 16 21 21 C 1.53184 * 109.31651 * 61.36579 * 20 19 17 22 22 N 1.46939 * 108.77316 * 305.36347 * 21 20 19 23 23 C 1.34771 * 120.62766 * 233.60957 * 22 21 20 24 24 O 1.21283 * 119.99825 * 180.02562 * 23 22 21 25 25 C 1.50703 * 120.00077 * 0.02562 * 23 22 21 26 26 F 1.39890 * 109.47371 * 54.99658 * 25 23 22 27 27 F 1.39907 * 109.46750 * 175.00085 * 25 23 22 28 28 C 1.46930 * 118.76399 * 53.58703 * 22 21 20 29 29 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 30 30 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 31 31 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 33 33 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 34 34 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 35 35 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47031 * 299.99740 * 15 13 3 38 38 H 1.08999 * 109.46714 * 59.99599 * 15 13 3 39 39 H 1.00902 * 110.99876 * 56.04708 * 16 15 13 40 40 H 1.08994 * 109.45825 * 298.70084 * 19 17 16 41 41 H 1.08996 * 109.46324 * 58.67800 * 19 17 16 42 42 H 1.09003 * 109.49237 * 181.31766 * 20 19 17 43 43 H 1.09000 * 109.49815 * 301.37296 * 20 19 17 44 44 H 1.09007 * 109.58955 * 65.14538 * 21 20 19 45 45 H 1.08998 * 109.59034 * 185.43632 * 21 20 19 46 46 H 1.08998 * 109.46948 * 294.99246 * 25 23 22 47 47 H 1.09000 * 109.61311 * 186.63840 * 28 22 21 48 48 H 1.09000 * 109.56188 * 66.21650 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6543 3.3947 3.5947 11 1 -0.3145 5.0853 4.7033 12 1 -0.9549 5.3752 2.3827 13 6 2.2430 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 7 2.3091 2.2064 -3.5890 17 6 2.0758 1.5461 -4.8802 18 1 2.3274 0.4886 -4.7988 19 6 2.9511 2.1983 -5.9529 20 6 2.7330 1.4896 -7.2918 21 6 1.2666 1.6359 -7.7097 22 7 0.4129 1.1430 -6.6200 23 6 -0.5254 0.2043 -6.8538 24 8 -1.2241 -0.1941 -5.9460 25 6 -0.7065 -0.3505 -8.2433 26 9 0.5147 -0.8492 -8.7091 27 9 -1.6510 -1.3821 -8.2140 28 6 0.6016 1.6923 -5.2703 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.0644 2.7986 1.1383 35 1 2.5506 1.3453 2.0283 36 1 2.0715 4.0835 4.4438 37 1 2.6213 0.4186 -2.5302 38 1 0.9433 1.0125 -2.5298 39 1 3.2574 2.5446 -3.5222 40 1 2.6823 3.2500 -6.0508 41 1 3.9993 2.1165 -5.6655 42 1 3.3740 1.9394 -8.0500 43 1 2.9787 0.4327 -7.1882 44 1 1.0443 2.6856 -7.9017 45 1 1.0838 1.0527 -8.6121 46 1 -1.0532 0.4407 -8.9080 47 1 -0.0199 1.1443 -4.5621 48 1 0.3246 2.7465 -5.2633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206984409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:42 Heat of formation + Delta-G solvation = -159.870756 kcal Electronic energy + Delta-G solvation = -31633.864954 eV Core-core repulsion = 26973.856128 eV Total energy + Delta-G solvation = -4660.008826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.69290 -47.69996 -40.60104 -39.16711 -38.08853 -35.63850 -35.06644 -32.92941 -32.64029 -30.70974 -29.93711 -28.79668 -27.50961 -25.61632 -25.51689 -23.05636 -22.72367 -22.06366 -21.51205 -19.97601 -18.83339 -18.36455 -18.11973 -17.71194 -16.73330 -16.55275 -16.26279 -15.94611 -15.63275 -15.47861 -14.98695 -14.85774 -14.56071 -14.46721 -14.24851 -14.13060 -13.94171 -13.70885 -13.39020 -13.30708 -13.11284 -13.01527 -12.94331 -12.57356 -12.34400 -12.09670 -12.03643 -11.69253 -11.42332 -11.40114 -11.38337 -11.15955 -10.88075 -10.80679 -10.68149 -10.46764 -10.34035 -10.02354 -9.56053 -9.28432 -8.91076 -8.43726 -8.39270 -7.63942 -6.00888 -4.04596 1.68506 2.05481 3.17067 3.34644 3.38534 3.38909 3.42047 3.46073 3.69819 4.03038 4.12011 4.17229 4.37573 4.41601 4.44205 4.49062 4.71659 4.87432 4.99471 5.10425 5.11669 5.28150 5.29832 5.33953 5.42629 5.45362 5.52299 5.56817 5.60210 5.74129 5.81855 5.85738 5.87261 5.90550 6.16704 6.35935 6.65778 6.77002 6.84392 7.11621 7.31207 7.34307 7.46146 7.59064 7.95944 8.27600 8.44807 8.94287 9.13001 9.60062 11.07341 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.002375 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.189429 B =11787.961173 C =12465.604475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.040 3.960 16 N -0.664 5.664 17 C 0.076 3.924 18 H 0.049 0.951 19 C -0.124 4.124 20 C -0.130 4.130 21 C 0.091 3.909 22 N -0.595 5.595 23 C 0.471 3.529 24 O -0.499 6.499 25 C 0.258 3.742 26 F -0.186 7.186 27 F -0.175 7.175 28 C 0.119 3.881 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.356 0.644 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.137 0.863 47 H 0.095 0.905 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -8.308 -27.342 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.093 4.093 16 N -0.298 5.298 17 C -0.035 4.035 18 H 0.067 0.933 19 C -0.162 4.162 20 C -0.168 4.168 21 C -0.032 4.032 22 N -0.329 5.329 23 C 0.254 3.746 24 O -0.372 6.372 25 C 0.201 3.799 26 F -0.167 7.167 27 F -0.156 7.156 28 C -0.003 4.003 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.177 0.823 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.154 0.846 47 H 0.113 0.887 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.724 -7.554 -26.620 27.680 hybrid contribution -0.145 -0.311 0.336 0.480 sum -0.868 -7.866 -26.284 27.449 Atomic orbital electron populations 1.22230 0.96232 1.00959 1.03435 1.21386 0.94673 0.83732 1.01508 1.48276 1.63976 1.13202 1.07729 1.19272 0.97515 0.92407 0.77991 1.21416 0.97511 1.31006 1.06107 0.92335 1.24931 0.96441 0.96299 0.96474 1.69921 1.27520 1.41762 1.14402 0.86587 0.83285 0.79935 0.77787 1.20272 1.21252 1.20178 1.20110 0.79067 0.86930 0.84813 1.90673 1.45765 1.17165 1.86931 1.22008 1.02643 0.94076 0.90547 1.59951 1.32843 1.37644 0.99369 1.21792 0.94937 0.96942 0.89787 0.93335 1.21744 0.99843 1.00830 0.93797 1.21856 0.95247 1.01947 0.97768 1.22112 0.90786 1.00830 0.89439 1.48099 1.34337 1.39316 1.11140 1.21031 0.82060 0.80963 0.90549 1.90846 1.44220 1.58190 1.43976 1.21623 0.75250 0.87642 0.95377 1.93012 1.44750 1.89244 1.89703 1.93075 1.64022 1.61309 1.97151 1.21768 0.96767 1.00234 0.81525 0.90514 0.93224 0.92811 0.92278 0.90691 0.93966 0.95129 0.92744 0.92994 0.88577 0.82287 0.90228 0.91059 0.89797 0.91099 0.90123 0.89037 0.84643 0.88668 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.11 1.81 5.98 -4.04 -0.02 1.79 16 3 N -0.60 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.46 5.20 -5.19 -0.03 6.43 16 5 C -0.52 -14.78 8.92 -34.44 -0.31 -15.09 16 6 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.36 7.71 -10.98 -0.08 10.27 16 14 O -0.53 -13.12 15.78 5.56 0.09 -13.04 16 15 C 0.04 0.59 4.52 -4.97 -0.02 0.56 16 16 N -0.66 -8.82 5.94 -107.86 -0.64 -9.46 16 17 C 0.08 0.76 2.64 -67.59 -0.18 0.58 16 18 H 0.05 0.50 7.80 -51.93 -0.41 0.10 16 19 C -0.12 -0.90 5.17 -26.68 -0.14 -1.04 16 20 C -0.13 -0.68 6.08 -26.61 -0.16 -0.84 16 21 C 0.09 0.46 6.12 -3.71 -0.02 0.43 16 22 N -0.59 -5.03 2.97 -172.76 -0.51 -5.54 16 23 C 0.47 4.75 7.55 -10.99 -0.08 4.67 16 24 O -0.50 -7.25 16.03 5.55 0.09 -7.16 16 25 C 0.26 1.79 4.67 36.01 0.17 1.96 16 26 F -0.19 -1.31 15.26 2.25 0.03 -1.27 16 27 F -0.17 -1.72 16.95 2.25 0.04 -1.68 16 28 C 0.12 1.25 5.90 -3.71 -0.02 1.23 16 29 H 0.08 1.45 7.26 -51.93 -0.38 1.07 16 30 H 0.05 0.79 7.22 -51.93 -0.37 0.41 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 0.66 7.31 -51.93 -0.38 0.28 16 38 H 0.10 1.40 6.60 -51.93 -0.34 1.05 16 39 H 0.36 4.76 8.03 -39.29 -0.32 4.45 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.32 5.04 -51.93 -0.26 0.05 16 46 H 0.14 0.33 8.11 -51.93 -0.42 -0.09 16 47 H 0.09 1.22 6.48 -51.93 -0.34 0.88 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -35.83 391.87 -7.57 -43.40 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.24 Total: 0.59 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.62 Total: 10.25 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.85 Total: -54.11 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.83 -7.57 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.467 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds