Wall clock time and date at job start Wed Apr 1 2020 04:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21281 * 120.00142 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00021 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47092 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99755 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.50081 * 325.00124 * 17 16 15 19 19 C 1.53042 * 109.49470 * 204.93772 * 17 16 15 20 20 C 1.53048 * 109.53402 * 178.68519 * 19 17 16 21 21 C 1.53184 * 109.31651 * 61.36579 * 20 19 17 22 22 N 1.46939 * 108.77316 * 305.36347 * 21 20 19 23 23 C 1.34771 * 120.62766 * 233.60957 * 22 21 20 24 24 O 1.21283 * 119.99825 * 180.02562 * 23 22 21 25 25 C 1.50703 * 120.00077 * 0.02562 * 23 22 21 26 26 F 1.39890 * 109.47371 * 54.99658 * 25 23 22 27 27 F 1.39907 * 109.46750 * 175.00085 * 25 23 22 28 28 C 1.46930 * 118.76399 * 53.58703 * 22 21 20 29 29 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 30 30 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 31 31 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 33 33 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 34 34 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 35 35 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47031 * 299.99740 * 15 13 3 38 38 H 1.08999 * 109.46714 * 59.99599 * 15 13 3 39 39 H 1.00902 * 110.99876 * 56.04708 * 16 15 13 40 40 H 1.08994 * 109.45825 * 298.70084 * 19 17 16 41 41 H 1.08996 * 109.46324 * 58.67800 * 19 17 16 42 42 H 1.09003 * 109.49237 * 181.31766 * 20 19 17 43 43 H 1.09000 * 109.49815 * 301.37296 * 20 19 17 44 44 H 1.09007 * 109.58955 * 65.14538 * 21 20 19 45 45 H 1.08998 * 109.59034 * 185.43632 * 21 20 19 46 46 H 1.08998 * 109.46948 * 294.99246 * 25 23 22 47 47 H 1.09000 * 109.61311 * 186.63840 * 28 22 21 48 48 H 1.09000 * 109.56188 * 66.21650 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6543 3.3947 3.5947 11 1 -0.3145 5.0853 4.7033 12 1 -0.9549 5.3752 2.3827 13 6 2.2430 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 7 2.3091 2.2064 -3.5890 17 6 2.0758 1.5461 -4.8802 18 1 2.3274 0.4886 -4.7988 19 6 2.9511 2.1983 -5.9529 20 6 2.7330 1.4896 -7.2918 21 6 1.2666 1.6359 -7.7097 22 7 0.4129 1.1430 -6.6200 23 6 -0.5254 0.2043 -6.8538 24 8 -1.2241 -0.1941 -5.9460 25 6 -0.7065 -0.3505 -8.2433 26 9 0.5147 -0.8492 -8.7091 27 9 -1.6510 -1.3821 -8.2140 28 6 0.6016 1.6923 -5.2703 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.0644 2.7986 1.1383 35 1 2.5506 1.3453 2.0283 36 1 2.0715 4.0835 4.4438 37 1 2.6213 0.4186 -2.5302 38 1 0.9433 1.0125 -2.5298 39 1 3.2574 2.5446 -3.5222 40 1 2.6823 3.2500 -6.0508 41 1 3.9993 2.1165 -5.6655 42 1 3.3740 1.9394 -8.0500 43 1 2.9787 0.4327 -7.1882 44 1 1.0443 2.6856 -7.9017 45 1 1.0838 1.0527 -8.6121 46 1 -1.0532 0.4407 -8.9080 47 1 -0.0199 1.1443 -4.5621 48 1 0.3246 2.7465 -5.2633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206984409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:26 Heat of formation + Delta-G solvation = -185.951877 kcal Electronic energy + Delta-G solvation = -31634.995916 eV Core-core repulsion = 26973.856128 eV Total energy + Delta-G solvation = -4661.139788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -50.26699 -48.29685 -41.36618 -40.71343 -38.95973 -37.04934 -36.30808 -34.85698 -33.53577 -31.73146 -31.38134 -29.79713 -28.97888 -27.00541 -26.14906 -24.59293 -24.12874 -23.15189 -22.25254 -20.66763 -19.90247 -19.41696 -18.70296 -18.67859 -18.35986 -17.97901 -17.40160 -17.17624 -16.81775 -16.37572 -16.24198 -15.94437 -15.56625 -15.35408 -15.25366 -15.04955 -14.83577 -14.66029 -14.60305 -14.43878 -14.14377 -14.03586 -13.89958 -13.81408 -13.49585 -13.40789 -13.25392 -13.15641 -13.01896 -12.71820 -12.54395 -12.52050 -12.15076 -12.00968 -11.90357 -11.80651 -11.65916 -11.52968 -11.06548 -10.62817 -10.59461 -9.98514 -9.50189 -9.42501 -8.21510 -6.34393 0.95642 1.35164 1.39034 1.39194 1.46232 1.81088 2.24544 2.40630 2.63490 2.94248 3.07765 3.12795 3.49201 3.61309 3.68291 3.72732 3.85710 3.98037 4.02858 4.06964 4.22757 4.24785 4.33861 4.46535 4.47571 4.55703 4.60288 4.70162 4.80161 4.88329 4.89480 4.98170 5.02037 5.04707 5.10571 5.19238 5.23353 5.36027 5.45511 5.60073 5.81982 5.91362 6.01074 6.08511 6.27507 6.63388 6.71809 6.80688 7.29861 7.49494 8.85586 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.002375 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.189429 B =11787.961173 C =12465.604475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.581 6.581 15 C 0.058 3.942 16 N -0.679 5.679 17 C 0.082 3.918 18 H 0.049 0.951 19 C -0.121 4.121 20 C -0.124 4.124 21 C 0.084 3.916 22 N -0.587 5.587 23 C 0.463 3.537 24 O -0.556 6.556 25 C 0.264 3.736 26 F -0.184 7.184 27 F -0.193 7.193 28 C 0.121 3.879 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.079 0.921 34 H -0.002 1.002 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.355 0.645 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.192 0.808 47 H 0.067 0.933 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -9.075 -30.264 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.573 4.573 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.074 4.074 16 N -0.313 5.313 17 C -0.028 4.028 18 H 0.067 0.933 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.037 4.037 22 N -0.320 5.320 23 C 0.247 3.753 24 O -0.433 6.433 25 C 0.208 3.792 26 F -0.165 7.165 27 F -0.174 7.174 28 C -0.002 4.002 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.017 0.983 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.176 0.824 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.209 0.791 47 H 0.086 0.914 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.216 -8.358 -29.594 30.775 hybrid contribution 0.083 -0.070 1.220 1.225 sum -1.133 -8.428 -28.374 29.621 Atomic orbital electron populations 1.22153 0.95817 1.02678 1.01537 1.21707 0.94966 0.81245 1.03757 1.48293 1.64094 1.14934 1.06358 1.18735 0.95424 0.91524 0.80256 1.21663 0.97907 1.31440 1.06278 0.92945 1.25809 0.99727 0.97010 0.96566 1.70036 1.29517 1.42524 1.14845 0.85551 0.79587 0.78805 0.77382 1.18713 1.20261 1.20442 1.21128 0.77514 0.86560 0.86300 1.90635 1.47974 1.19684 1.87846 1.21834 1.03502 0.94351 0.87725 1.59914 1.32898 1.38197 1.00282 1.21817 0.95109 0.96920 0.88941 0.93330 1.21744 0.99357 1.00773 0.93990 1.21858 0.95793 1.01535 0.97056 1.22461 0.89964 1.02352 0.88880 1.48196 1.34129 1.38539 1.11115 1.21712 0.81399 0.80662 0.91484 1.90817 1.46387 1.60142 1.46003 1.21931 0.74967 0.88131 0.94177 1.93017 1.44765 1.89357 1.89372 1.93037 1.64830 1.62452 1.97125 1.21578 0.96596 0.99568 0.82474 0.94004 0.93438 0.89249 0.88125 0.90295 0.98345 0.95983 0.92481 0.90021 0.87984 0.82417 0.90273 0.90622 0.87102 0.91626 0.88187 0.86720 0.79120 0.91440 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 10.24 71.98 0.74 -4.35 16 2 C 0.11 3.34 5.98 86.38 0.52 3.85 16 3 N -0.60 -26.00 2.46 -826.15 -2.03 -28.03 16 4 C 0.26 14.33 5.20 85.63 0.45 14.78 16 5 C -0.53 -31.30 8.92 25.60 0.23 -31.07 16 6 H 0.05 3.07 7.42 -2.91 -0.02 3.04 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 9 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.50 20.79 7.71 87.66 0.68 21.46 16 14 O -0.58 -30.11 15.78 -3.03 -0.05 -30.16 16 15 C 0.06 1.67 4.52 85.56 0.39 2.06 16 16 N -0.68 -17.72 5.94 -495.17 -2.94 -20.66 16 17 C 0.08 1.53 2.64 44.99 0.12 1.65 16 18 H 0.05 0.92 7.80 -2.39 -0.02 0.90 16 19 C -0.12 -1.48 5.17 30.62 0.16 -1.32 16 20 C -0.12 -0.87 6.08 30.67 0.19 -0.68 16 21 C 0.08 0.54 6.12 86.36 0.53 1.07 16 22 N -0.59 -8.81 2.97 -818.88 -2.43 -11.24 16 23 C 0.46 8.70 7.55 87.66 0.66 9.36 16 24 O -0.56 -16.31 16.03 -3.04 -0.05 -16.36 16 25 C 0.26 2.94 4.67 71.24 0.33 3.27 16 26 F -0.18 -1.99 15.26 44.97 0.69 -1.31 16 27 F -0.19 -3.52 16.95 44.97 0.76 -2.76 16 28 C 0.12 2.46 5.90 86.36 0.51 2.96 16 29 H 0.04 1.58 7.26 -2.39 -0.02 1.57 16 30 H 0.05 1.47 7.22 -2.39 -0.02 1.46 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.10 2.37 6.44 -2.39 -0.02 2.35 16 33 H 0.08 2.44 7.89 -2.39 -0.02 2.42 16 34 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 35 H 0.02 1.23 7.89 -2.39 -0.02 1.21 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.08 1.88 7.31 -2.39 -0.02 1.87 16 38 H 0.10 2.87 6.60 -2.39 -0.02 2.86 16 39 H 0.35 9.42 8.03 -89.69 -0.72 8.70 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 45 H 0.11 0.26 5.04 -2.39 -0.01 0.25 16 46 H 0.19 0.05 8.11 -2.39 -0.02 0.03 16 47 H 0.07 1.76 6.48 -2.39 -0.02 1.74 16 48 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -83.92 391.87 2.48 -81.45 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.27 Total: 13.77 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 5.95 Total: 23.95 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.12 Total: -116.68 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.10 Total: -46.52 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.45 Total: -4.07 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -83.92 2.48 -81.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.503 kcal (2) G-P(sol) polarization free energy of solvation -83.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds