Wall clock time and date at job start Wed Apr 1 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47561 * 2 1 4 4 C 1.46497 * 119.99567 * 90.00274 * 3 2 1 5 5 C 1.50700 * 109.47128 * 269.99933 * 4 3 2 6 6 H 1.07999 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 C 1.34771 * 120.00412 * 270.00155 * 3 2 1 14 14 O 1.21277 * 120.00598 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99635 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47064 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00470 * 179.97438 * 16 15 13 18 18 H 1.09008 * 109.49259 * 35.06675 * 17 16 15 19 19 C 1.53037 * 109.50021 * 155.16325 * 17 16 15 20 20 C 1.53044 * 109.53770 * 181.32131 * 19 17 16 21 21 C 1.53196 * 109.30904 * 298.63521 * 20 19 17 22 22 N 1.46923 * 108.77806 * 54.63508 * 21 20 19 23 23 C 1.34777 * 120.63079 * 126.36318 * 22 21 20 24 24 O 1.21280 * 120.00160 * 180.02562 * 23 22 21 25 25 C 1.50710 * 119.99900 * 0.02828 * 23 22 21 26 26 F 1.39896 * 109.47011 * 54.99643 * 25 23 22 27 27 F 1.39903 * 109.46936 * 174.99503 * 25 23 22 28 28 C 1.46921 * 118.73880 * 306.39262 * 22 21 20 29 29 H 1.09000 * 109.46188 * 300.00165 * 1 2 3 30 30 H 1.08999 * 109.46655 * 59.99164 * 1 2 3 31 31 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46811 * 240.00201 * 2 1 3 33 33 H 1.08997 * 109.47375 * 120.00648 * 2 1 3 34 34 H 1.09004 * 109.47268 * 150.00073 * 4 3 2 35 35 H 1.08997 * 109.47471 * 30.00480 * 4 3 2 36 36 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47311 * 300.00050 * 15 13 3 38 38 H 1.08997 * 109.47160 * 60.00434 * 15 13 3 39 39 H 1.00910 * 110.99672 * 56.04468 * 16 15 13 40 40 H 1.08996 * 109.46180 * 301.34357 * 19 17 16 41 41 H 1.08998 * 109.45831 * 61.30180 * 19 17 16 42 42 H 1.08995 * 109.49611 * 178.68914 * 20 19 17 43 43 H 1.08994 * 109.52371 * 58.60220 * 20 19 17 44 44 H 1.09005 * 109.59056 * 294.84382 * 21 20 19 45 45 H 1.09000 * 109.70222 * 174.49522 * 21 20 19 46 46 H 1.08997 * 109.47136 * 294.99700 * 25 23 22 47 47 H 1.08998 * 109.58686 * 293.81965 * 28 22 21 48 48 H 1.08999 * 109.70327 * 173.46138 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 1.2688 5 6 1.0069 2.7821 1.7039 6 1 0.1159 2.7247 1.0963 7 6 0.9955 3.5055 2.8777 8 7 2.0790 3.5709 3.6203 9 14 -0.5612 4.3855 3.4174 10 1 -1.6533 3.3951 3.5957 11 1 -0.3136 5.0855 4.7034 12 1 -0.9546 5.3751 2.3823 13 6 2.2431 2.0166 -1.1671 14 8 2.6470 3.1601 -1.1671 15 6 1.9924 1.3060 -2.4723 16 7 2.3099 2.2062 -3.5888 17 6 2.0776 1.5458 -4.8802 18 1 1.2174 0.8811 -4.7992 19 6 1.8079 2.6029 -5.9534 20 6 1.5332 1.9144 -7.2923 21 6 2.7661 1.1061 -7.7087 22 7 3.1191 0.1865 -6.6186 23 6 3.2584 -1.1336 -6.8518 24 8 3.5496 -1.8824 -5.9433 25 6 3.0525 -1.6791 -8.2415 26 9 3.8873 -1.0019 -9.1367 27 9 3.3610 -3.0436 -8.2572 28 6 3.3166 0.7333 -5.2693 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0647 2.7983 1.1385 35 1 2.5508 1.3450 2.0283 36 1 2.0711 4.0801 4.4458 37 1 2.6228 0.4187 -2.5299 38 1 0.9445 1.0116 -2.5302 39 1 3.2581 2.5450 -3.5217 40 1 0.9413 3.1985 -5.6668 41 1 2.6782 3.2518 -6.0506 42 1 1.3183 2.6669 -8.0510 43 1 0.6779 1.2465 -7.1898 44 1 3.5991 1.7826 -7.9002 45 1 2.5442 0.5356 -8.6106 46 1 2.0128 -1.5383 -8.5367 47 1 4.1944 1.3794 -5.2617 48 1 3.4568 -0.0818 -4.5593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206984410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:07 Heat of formation + Delta-G solvation = -161.397100 kcal Electronic energy + Delta-G solvation = -31455.350245 eV Core-core repulsion = 26795.275232 eV Total energy + Delta-G solvation = -4660.075013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.71144 -47.72149 -40.70474 -39.19339 -38.13955 -35.67786 -35.09329 -32.96780 -32.67935 -30.73798 -29.96103 -28.79784 -27.52562 -25.66264 -25.40684 -23.15287 -22.74826 -22.18486 -21.45944 -20.24927 -18.78427 -18.42268 -18.23625 -17.75815 -16.71311 -16.52428 -16.40914 -16.12524 -15.51253 -15.23755 -14.98389 -14.95171 -14.60182 -14.51125 -14.24787 -14.10578 -14.00513 -13.72443 -13.55753 -13.41686 -13.25041 -13.07143 -12.88286 -12.60928 -12.39348 -12.12994 -11.86296 -11.74144 -11.45412 -11.39364 -11.32570 -11.17879 -11.03121 -10.90567 -10.70871 -10.49701 -10.41812 -10.04116 -9.57823 -9.43928 -8.93741 -8.41255 -8.39039 -7.65466 -6.02125 -4.05965 1.63179 1.96166 3.11610 3.32691 3.36786 3.37459 3.38413 3.44399 3.66487 3.98369 4.06373 4.16103 4.39592 4.42475 4.44579 4.46894 4.52257 4.79394 4.96138 5.07502 5.10058 5.21246 5.28466 5.32456 5.33503 5.36272 5.49109 5.54997 5.56636 5.73215 5.78758 5.85198 5.85970 5.96885 6.12479 6.31868 6.56329 6.73337 6.80736 7.10389 7.24376 7.28769 7.45232 7.57537 7.94477 8.26162 8.43380 8.92720 9.11422 9.58570 11.06100 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.002174 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.184817 B =12879.140609 C =13501.101172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.038 3.962 16 N -0.658 5.658 17 C 0.077 3.923 18 H 0.083 0.917 19 C -0.110 4.110 20 C -0.135 4.135 21 C 0.097 3.903 22 N -0.591 5.591 23 C 0.471 3.529 24 O -0.501 6.501 25 C 0.259 3.741 26 F -0.187 7.187 27 F -0.175 7.175 28 C 0.078 3.922 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.352 0.648 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.077 0.923 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -9.407 -26.692 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.094 4.094 16 N -0.289 5.289 17 C -0.034 4.034 18 H 0.102 0.898 19 C -0.148 4.148 20 C -0.173 4.173 21 C -0.025 4.025 22 N -0.325 5.325 23 C 0.254 3.746 24 O -0.375 6.375 25 C 0.202 3.798 26 F -0.168 7.168 27 F -0.156 7.156 28 C -0.045 4.045 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.173 0.827 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.154 0.846 47 H 0.096 0.904 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.856 -8.821 -25.968 27.438 hybrid contribution -0.103 -0.232 0.282 0.379 sum -0.958 -9.053 -25.686 27.251 Atomic orbital electron populations 1.22228 0.96318 1.00872 1.03383 1.21392 0.94600 0.83753 1.01629 1.48267 1.63968 1.13188 1.07730 1.19277 0.97519 0.92434 0.77990 1.21402 0.97481 1.31005 1.06136 0.92378 1.24940 0.96440 0.96327 0.96471 1.69924 1.27613 1.41680 1.14319 0.86584 0.83266 0.79910 0.77807 1.20310 1.21242 1.20187 1.20108 0.79099 0.86932 0.84824 1.90676 1.45731 1.17191 1.86924 1.22005 1.02582 0.94258 0.90567 1.60286 1.32701 1.36587 0.99370 1.21976 0.96699 0.94722 0.90023 0.89833 1.21526 1.03450 0.97504 0.92346 1.21960 0.97168 0.99790 0.98429 1.22073 0.98703 0.93063 0.88708 1.48050 1.67825 1.05810 1.10840 1.21082 0.79467 0.83296 0.90753 1.90835 1.45439 1.56744 1.44487 1.21598 0.95598 0.75398 0.87242 1.93045 1.74916 1.79447 1.69388 1.93075 1.94727 1.31156 1.96606 1.22702 0.99566 0.99352 0.82904 0.90502 0.93311 0.92840 0.92197 0.90661 0.93965 0.95101 0.92726 0.92882 0.88516 0.82722 0.90049 0.91251 0.89703 0.91180 0.89973 0.89542 0.84610 0.90439 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.11 1.77 5.98 -4.04 -0.02 1.74 16 3 N -0.60 -12.45 2.46 -175.06 -0.43 -12.88 16 4 C 0.25 6.41 5.20 -5.20 -0.03 6.38 16 5 C -0.52 -14.63 8.92 -34.44 -0.31 -14.94 16 6 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.50 10.22 7.71 -10.98 -0.08 10.13 16 14 O -0.53 -13.04 15.78 5.56 0.09 -12.96 16 15 C 0.04 0.55 4.52 -4.97 -0.02 0.52 16 16 N -0.66 -8.48 5.88 -107.87 -0.63 -9.12 16 17 C 0.08 0.71 2.62 -67.60 -0.18 0.54 16 18 H 0.08 0.80 7.80 -51.92 -0.41 0.39 16 19 C -0.11 -0.82 5.49 -26.69 -0.15 -0.96 16 20 C -0.13 -0.63 6.08 -26.61 -0.16 -0.79 16 21 C 0.10 0.46 5.91 -3.71 -0.02 0.44 16 22 N -0.59 -4.58 2.97 -172.77 -0.51 -5.10 16 23 C 0.47 4.47 7.55 -10.98 -0.08 4.39 16 24 O -0.50 -6.91 16.04 5.56 0.09 -6.82 16 25 C 0.26 1.71 4.62 36.01 0.17 1.88 16 26 F -0.19 -1.28 15.53 2.25 0.03 -1.25 16 27 F -0.17 -1.66 16.95 2.25 0.04 -1.63 16 28 C 0.08 0.71 5.68 -3.71 -0.02 0.69 16 29 H 0.08 1.41 7.26 -51.93 -0.38 1.03 16 30 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.05 0.67 6.81 -51.93 -0.35 0.31 16 38 H 0.10 1.30 7.10 -51.93 -0.37 0.93 16 39 H 0.35 4.67 8.11 -39.29 -0.32 4.35 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.25 5.34 -51.93 -0.28 -0.02 16 46 H 0.14 0.30 7.92 -51.93 -0.41 -0.11 16 47 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 48 H 0.09 1.04 6.48 -51.93 -0.34 0.70 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -35.68 392.04 -7.57 -43.25 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.24 Total: 0.18 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.63 Total: 9.44 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.84 Total: -53.03 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.68 -7.57 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.147 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds