Wall clock time and date at job start Wed Apr 1 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47561 * 2 1 4 4 C 1.46497 * 119.99567 * 90.00274 * 3 2 1 5 5 C 1.50700 * 109.47128 * 269.99933 * 4 3 2 6 6 H 1.07999 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 C 1.34771 * 120.00412 * 270.00155 * 3 2 1 14 14 O 1.21277 * 120.00598 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99635 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47064 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00470 * 179.97438 * 16 15 13 18 18 H 1.09008 * 109.49259 * 35.06675 * 17 16 15 19 19 C 1.53037 * 109.50021 * 155.16325 * 17 16 15 20 20 C 1.53044 * 109.53770 * 181.32131 * 19 17 16 21 21 C 1.53196 * 109.30904 * 298.63521 * 20 19 17 22 22 N 1.46923 * 108.77806 * 54.63508 * 21 20 19 23 23 C 1.34777 * 120.63079 * 126.36318 * 22 21 20 24 24 O 1.21280 * 120.00160 * 180.02562 * 23 22 21 25 25 C 1.50710 * 119.99900 * 0.02828 * 23 22 21 26 26 F 1.39896 * 109.47011 * 54.99643 * 25 23 22 27 27 F 1.39903 * 109.46936 * 174.99503 * 25 23 22 28 28 C 1.46921 * 118.73880 * 306.39262 * 22 21 20 29 29 H 1.09000 * 109.46188 * 300.00165 * 1 2 3 30 30 H 1.08999 * 109.46655 * 59.99164 * 1 2 3 31 31 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46811 * 240.00201 * 2 1 3 33 33 H 1.08997 * 109.47375 * 120.00648 * 2 1 3 34 34 H 1.09004 * 109.47268 * 150.00073 * 4 3 2 35 35 H 1.08997 * 109.47471 * 30.00480 * 4 3 2 36 36 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47311 * 300.00050 * 15 13 3 38 38 H 1.08997 * 109.47160 * 60.00434 * 15 13 3 39 39 H 1.00910 * 110.99672 * 56.04468 * 16 15 13 40 40 H 1.08996 * 109.46180 * 301.34357 * 19 17 16 41 41 H 1.08998 * 109.45831 * 61.30180 * 19 17 16 42 42 H 1.08995 * 109.49611 * 178.68914 * 20 19 17 43 43 H 1.08994 * 109.52371 * 58.60220 * 20 19 17 44 44 H 1.09005 * 109.59056 * 294.84382 * 21 20 19 45 45 H 1.09000 * 109.70222 * 174.49522 * 21 20 19 46 46 H 1.08997 * 109.47136 * 294.99700 * 25 23 22 47 47 H 1.08998 * 109.58686 * 293.81965 * 28 22 21 48 48 H 1.08999 * 109.70327 * 173.46138 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 1.2688 5 6 1.0069 2.7821 1.7039 6 1 0.1159 2.7247 1.0963 7 6 0.9955 3.5055 2.8777 8 7 2.0790 3.5709 3.6203 9 14 -0.5612 4.3855 3.4174 10 1 -1.6533 3.3951 3.5957 11 1 -0.3136 5.0855 4.7034 12 1 -0.9546 5.3751 2.3823 13 6 2.2431 2.0166 -1.1671 14 8 2.6470 3.1601 -1.1671 15 6 1.9924 1.3060 -2.4723 16 7 2.3099 2.2062 -3.5888 17 6 2.0776 1.5458 -4.8802 18 1 1.2174 0.8811 -4.7992 19 6 1.8079 2.6029 -5.9534 20 6 1.5332 1.9144 -7.2923 21 6 2.7661 1.1061 -7.7087 22 7 3.1191 0.1865 -6.6186 23 6 3.2584 -1.1336 -6.8518 24 8 3.5496 -1.8824 -5.9433 25 6 3.0525 -1.6791 -8.2415 26 9 3.8873 -1.0019 -9.1367 27 9 3.3610 -3.0436 -8.2572 28 6 3.3166 0.7333 -5.2693 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0647 2.7983 1.1385 35 1 2.5508 1.3450 2.0283 36 1 2.0711 4.0801 4.4458 37 1 2.6228 0.4187 -2.5299 38 1 0.9445 1.0116 -2.5302 39 1 3.2581 2.5450 -3.5217 40 1 0.9413 3.1985 -5.6668 41 1 2.6782 3.2518 -6.0506 42 1 1.3183 2.6669 -8.0510 43 1 0.6779 1.2465 -7.1898 44 1 3.5991 1.7826 -7.9002 45 1 2.5442 0.5356 -8.6106 46 1 2.0128 -1.5383 -8.5367 47 1 4.1944 1.3794 -5.2617 48 1 3.4568 -0.0818 -4.5593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206984410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:02 Heat of formation + Delta-G solvation = -187.303078 kcal Electronic energy + Delta-G solvation = -31456.473612 eV Core-core repulsion = 26795.275232 eV Total energy + Delta-G solvation = -4661.198381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -50.25729 -48.28890 -41.41816 -40.70598 -38.97369 -37.04170 -36.30799 -34.84581 -33.54740 -31.73834 -31.34984 -29.74394 -28.97391 -26.95630 -26.07086 -24.56285 -24.11653 -23.32378 -22.13993 -20.90534 -19.88278 -19.32610 -18.80046 -18.68724 -18.37914 -17.94582 -17.40014 -17.16375 -16.89985 -16.28622 -16.07562 -15.94048 -15.50725 -15.37007 -15.20320 -15.02860 -14.78892 -14.62445 -14.58724 -14.45219 -14.26342 -14.05672 -14.00280 -13.75721 -13.62966 -13.35723 -13.20893 -13.12809 -12.99360 -12.67394 -12.51225 -12.38744 -12.14758 -11.96396 -11.89663 -11.79051 -11.66249 -11.64807 -11.10677 -10.62105 -10.58420 -10.12240 -9.45435 -9.35245 -8.20597 -6.33739 0.95256 1.35475 1.36165 1.40243 1.47363 1.82906 2.25079 2.41614 2.62026 2.94168 3.08612 3.13185 3.48242 3.63525 3.66307 3.75724 3.80973 3.93981 4.01186 4.08498 4.21635 4.22272 4.36357 4.44645 4.49711 4.59513 4.65279 4.67080 4.72992 4.88751 4.90842 5.00851 5.03129 5.05689 5.19977 5.23621 5.30039 5.39766 5.48936 5.60905 5.83151 5.91958 5.97600 6.08843 6.24460 6.60493 6.72670 6.81749 7.30666 7.50605 8.86577 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.002174 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.184817 B =12879.140609 C =13501.101172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.057 3.943 16 N -0.673 5.673 17 C 0.085 3.915 18 H 0.086 0.914 19 C -0.109 4.109 20 C -0.125 4.125 21 C 0.092 3.908 22 N -0.584 5.584 23 C 0.464 3.536 24 O -0.555 6.555 25 C 0.263 3.737 26 F -0.187 7.187 27 F -0.193 7.193 28 C 0.082 3.918 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.075 0.925 34 H -0.004 1.004 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.348 0.652 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.192 0.808 47 H 0.079 0.921 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -10.266 -29.531 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.570 4.570 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.075 4.075 16 N -0.305 5.305 17 C -0.026 4.026 18 H 0.105 0.895 19 C -0.147 4.147 20 C -0.164 4.164 21 C -0.029 4.029 22 N -0.317 5.317 23 C 0.248 3.752 24 O -0.433 6.433 25 C 0.207 3.793 26 F -0.168 7.168 27 F -0.175 7.175 28 C -0.042 4.042 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.131 0.869 46 H 0.208 0.792 47 H 0.097 0.903 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.990 -9.705 -28.861 30.596 hybrid contribution 0.618 0.059 1.134 1.293 sum -2.372 -9.646 -27.727 29.453 Atomic orbital electron populations 1.22148 0.95337 1.02798 1.01777 1.21722 0.95375 0.81139 1.03612 1.48288 1.64124 1.14944 1.06320 1.18732 0.95497 0.91488 0.80305 1.21653 0.97853 1.31278 1.06261 0.92682 1.25854 0.99804 0.97100 0.96589 1.70050 1.29735 1.42524 1.14779 0.85517 0.79495 0.78791 0.77317 1.18539 1.20487 1.20323 1.21184 0.77509 0.86561 0.86389 1.90639 1.48001 1.19847 1.87871 1.21852 1.03919 0.94184 0.87539 1.60328 1.32544 1.37136 1.00451 1.22002 0.96671 0.95188 0.88716 0.89540 1.21528 1.02856 0.97028 0.93316 1.21930 0.97215 1.00184 0.97042 1.22365 0.99055 0.92997 0.88497 1.48157 1.66700 1.05865 1.10951 1.21695 0.78529 0.83309 0.91626 1.90809 1.47993 1.58078 1.46416 1.21938 0.97946 0.74027 0.85417 1.93047 1.75390 1.79322 1.69026 1.93037 1.95046 1.32819 1.96565 1.22521 0.99552 0.98559 0.83617 0.94108 0.92822 0.89105 0.88219 0.90668 0.98570 0.96168 0.92537 0.90572 0.86825 0.83275 0.91181 0.91480 0.87449 0.90403 0.89316 0.86907 0.79156 0.90263 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 10.24 71.98 0.74 -3.93 16 2 C 0.10 3.20 5.98 86.38 0.52 3.72 16 3 N -0.60 -25.69 2.46 -826.16 -2.03 -27.72 16 4 C 0.26 14.25 5.20 85.63 0.45 14.70 16 5 C -0.53 -30.77 8.92 25.60 0.23 -30.54 16 6 H 0.05 3.15 7.42 -2.91 -0.02 3.13 16 7 C 0.01 0.29 5.46 84.66 0.46 0.76 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.50 20.44 7.71 87.66 0.68 21.12 16 14 O -0.58 -30.13 15.78 -3.02 -0.05 -30.18 16 15 C 0.06 1.57 4.52 85.56 0.39 1.96 16 16 N -0.67 -16.99 5.88 -495.18 -2.91 -19.90 16 17 C 0.08 1.43 2.62 44.99 0.12 1.55 16 18 H 0.09 1.44 7.80 -2.38 -0.02 1.42 16 19 C -0.11 -1.39 5.49 30.62 0.17 -1.23 16 20 C -0.13 -0.70 6.08 30.67 0.19 -0.51 16 21 C 0.09 0.54 5.91 86.36 0.51 1.05 16 22 N -0.58 -7.76 2.97 -818.90 -2.43 -10.19 16 23 C 0.46 7.99 7.55 87.66 0.66 8.65 16 24 O -0.56 -15.12 16.04 -3.03 -0.05 -15.17 16 25 C 0.26 2.71 4.62 71.24 0.33 3.04 16 26 F -0.19 -1.98 15.53 44.97 0.70 -1.29 16 27 F -0.19 -3.37 16.95 44.97 0.76 -2.61 16 28 C 0.08 1.39 5.68 86.36 0.49 1.88 16 29 H 0.04 1.46 7.26 -2.39 -0.02 1.45 16 30 H 0.05 1.47 7.22 -2.39 -0.02 1.45 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.30 6.44 -2.39 -0.02 2.29 16 33 H 0.07 2.32 7.89 -2.39 -0.02 2.30 16 34 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 35 H 0.02 1.13 7.89 -2.39 -0.02 1.11 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.08 1.77 6.81 -2.39 -0.02 1.75 16 38 H 0.11 2.78 7.10 -2.39 -0.02 2.76 16 39 H 0.35 9.34 8.11 -89.69 -0.73 8.61 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.11 0.12 5.34 -2.39 -0.01 0.11 16 46 H 0.19 -0.09 7.92 -2.39 -0.02 -0.11 16 47 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 48 H 0.07 1.60 6.48 -2.39 -0.02 1.59 16 Total: -1.00 -83.56 392.04 2.48 -81.08 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.26 Total: 13.08 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 5.92 Total: 22.20 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.09 Total: -114.59 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.10 Total: -45.35 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.46 Total: -3.89 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.56 2.48 -81.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206984410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.223 kcal (2) G-P(sol) polarization free energy of solvation -83.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds