Wall clock time and date at job start Wed Apr 1 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35847 * 126.13635 * 2 1 4 4 N 1.30171 * 109.00216 * 179.73893 * 3 2 1 5 5 C 1.35765 * 108.86699 * 0.38691 * 4 3 2 6 6 C 1.47324 * 126.23558 * 179.88405 * 5 4 3 7 7 O 1.21623 * 119.99936 * 179.68391 * 6 5 4 8 8 N 1.34777 * 119.99763 * 359.95602 * 6 5 4 9 9 C 1.47215 * 136.38346 * 359.72972 * 8 6 5 10 10 C 1.53908 * 87.74144 * 151.98428 * 9 8 6 11 11 H 1.09004 * 115.07031 * 142.15596 * 10 9 8 12 12 C 1.53154 * 111.75071 * 274.08351 * 10 9 8 13 13 C 1.53090 * 108.80138 * 139.01824 * 12 10 9 14 14 N 1.46404 * 109.00134 * 297.59571 * 13 12 10 15 15 C 1.46897 * 111.00301 * 190.48912 * 14 13 12 16 16 C 1.50696 * 109.47204 * 66.04581 * 15 14 13 17 17 O 1.21293 * 120.00139 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99865 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99662 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99810 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99972 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47187 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47287 * 119.99562 * 23 21 19 26 26 H 1.48493 * 109.47279 * 239.99524 * 23 21 19 27 27 C 1.45489 * 113.12358 * 64.94141 * 14 13 12 28 28 C 1.46635 * 136.37660 * 179.34854 * 8 6 5 29 29 H 1.09002 * 111.72782 * 95.37970 * 28 8 6 30 30 C 1.35384 * 126.13216 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47067 * 270.02713 * 1 2 3 32 32 H 1.09004 * 109.46805 * 30.02339 * 1 2 3 33 33 H 1.08995 * 109.47717 * 150.02631 * 1 2 3 34 34 H 1.07996 * 125.49910 * 359.97438 * 3 2 1 35 35 H 1.08997 * 113.50400 * 266.70807 * 9 8 6 36 36 H 1.09003 * 113.50211 * 37.20350 * 9 8 6 37 37 H 1.09005 * 109.58245 * 258.80579 * 12 10 9 38 38 H 1.08999 * 109.58546 * 19.07982 * 12 10 9 39 39 H 1.09001 * 109.55472 * 57.45328 * 13 12 10 40 40 H 1.09005 * 109.55212 * 177.65140 * 13 12 10 41 41 H 1.09001 * 109.47019 * 186.05356 * 15 14 13 42 42 H 1.09006 * 109.46691 * 306.04721 * 15 14 13 43 43 H 0.97001 * 120.00569 * 0.02562 * 18 16 15 44 44 H 0.96998 * 119.99756 * 180.02562 * 22 21 19 45 45 H 1.09004 * 108.58221 * 71.67280 * 27 14 13 46 46 H 1.09001 * 108.57800 * 189.48990 * 27 14 13 47 47 H 1.07991 * 126.56561 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0056 5 6 3.5511 -0.6434 0.0007 6 6 4.7652 -1.4779 0.0021 7 8 4.6697 -2.6904 0.0030 8 7 5.9816 -0.8976 0.0078 9 6 6.5064 0.4778 0.0089 10 6 7.7495 -0.0620 0.7384 11 1 8.6941 0.3922 0.4393 12 6 7.5392 -0.1153 2.2545 13 6 8.1444 -1.4151 2.7911 14 7 7.4387 -2.5510 2.1953 15 6 7.8095 -3.8080 2.8590 16 6 7.3181 -3.7879 4.2835 17 8 6.7177 -2.8217 4.7043 18 7 7.5450 -4.8440 5.0895 19 6 7.0975 -4.8258 6.3853 20 1 6.5636 -3.9652 6.7603 21 6 7.3318 -5.9144 7.2165 22 7 7.9819 -6.9614 6.7604 23 14 6.7215 -5.8900 8.9818 24 1 6.0236 -4.6062 9.2466 25 1 5.7806 -7.0188 9.1959 26 1 7.8755 -6.0254 9.9064 27 6 7.6239 -2.6473 0.7555 28 6 7.3752 -1.3537 0.0223 29 1 7.7964 -1.3963 -0.9821 30 6 2.2633 -1.0934 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5134 34 1 1.9258 2.1221 -0.0004 35 1 6.7202 0.8623 -0.9884 36 1 5.9143 1.1685 0.6094 37 1 8.0321 0.7373 2.7219 38 1 6.4725 -0.0875 2.4767 39 1 9.2007 -1.4623 2.5263 40 1 8.0385 -1.4463 3.8756 41 1 7.3556 -4.6459 2.3298 42 1 8.8940 -3.9173 2.8502 43 1 8.0248 -5.6169 4.7529 44 1 8.1451 -7.7214 7.3406 45 1 8.6463 -2.9693 0.5575 46 1 6.9413 -3.4033 0.3673 47 1 1.9421 -2.1245 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221478116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:33 Heat of formation + Delta-G solvation = 54.129851 kcal Electronic energy + Delta-G solvation = -30989.917479 eV Core-core repulsion = 26789.877602 eV Total energy + Delta-G solvation = -4200.039877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.28715 -40.92515 -38.39248 -37.66823 -35.83370 -34.32832 -33.72141 -31.83364 -31.07846 -30.19348 -29.48066 -28.41456 -27.25648 -25.70945 -24.05377 -23.82721 -22.58273 -21.47784 -21.31766 -19.97809 -19.07803 -18.22477 -17.76446 -17.37886 -16.43358 -16.19827 -15.96894 -15.68974 -15.52129 -14.84545 -14.66928 -14.43682 -14.29149 -13.92834 -13.84180 -13.73814 -13.56658 -13.45797 -13.17091 -13.10210 -12.81981 -12.66863 -12.22588 -12.11747 -11.81536 -11.43300 -11.40666 -11.16903 -10.96215 -10.81525 -10.45670 -10.35637 -10.26908 -10.13712 -9.96866 -9.94775 -9.56381 -9.37505 -8.79110 -8.41228 -8.22365 -7.85280 -7.54842 -6.32164 -3.72245 1.56284 2.35745 2.39844 3.04665 3.22355 3.31897 3.39554 3.71173 4.03640 4.07962 4.24456 4.29589 4.30242 4.43320 4.58708 4.68568 4.78210 4.94998 4.95361 5.06367 5.16838 5.28876 5.31808 5.35925 5.44611 5.48258 5.54845 5.70186 5.75338 5.83502 5.86332 5.98548 6.00501 6.04317 6.13707 6.19174 6.27578 6.38992 6.42969 6.61475 6.67828 6.82804 7.53732 7.63728 7.64327 7.76048 7.99568 8.17803 8.49971 8.73652 9.28750 9.66539 10.19323 10.86073 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.002828 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.058990 B = 9899.176629 C =11361.126860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.463 5.463 3 C 0.178 3.822 4 N -0.459 5.459 5 C -0.049 4.049 6 C 0.637 3.363 7 O -0.536 6.536 8 N -0.618 5.618 9 C 0.113 3.887 10 C -0.126 4.126 11 H 0.098 0.902 12 C -0.090 4.090 13 C 0.060 3.940 14 N -0.516 5.516 15 C 0.054 3.946 16 C 0.448 3.552 17 O -0.575 6.575 18 N -0.568 5.568 19 C -0.294 4.294 20 H 0.102 0.898 21 C 0.020 3.980 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.058 3.942 28 C 0.147 3.853 29 H 0.086 0.914 30 C 0.031 3.969 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.209 0.791 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.391 0.609 44 H 0.269 0.731 45 H 0.032 0.968 46 H 0.089 0.911 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 16.271 -18.432 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.145 5.145 3 C -0.105 4.105 4 N -0.178 5.178 5 C -0.178 4.178 6 C 0.426 3.574 7 O -0.413 6.413 8 N -0.352 5.352 9 C -0.010 4.010 10 C -0.145 4.145 11 H 0.116 0.884 12 C -0.128 4.128 13 C -0.067 4.067 14 N -0.241 5.241 15 C -0.078 4.078 16 C 0.234 3.766 17 O -0.458 6.458 18 N -0.205 5.205 19 C -0.424 4.424 20 H 0.120 0.880 21 C -0.181 4.181 22 N -0.546 5.546 23 Si 0.755 3.245 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.071 4.071 28 C 0.043 3.957 29 H 0.104 0.896 30 C -0.108 4.108 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.107 0.893 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.628 16.579 -17.980 25.934 hybrid contribution -0.019 -1.201 0.434 1.277 sum -8.647 15.378 -17.546 24.882 Atomic orbital electron populations 1.22130 0.75937 1.04938 1.04136 1.45315 1.08169 1.06952 1.54053 1.25175 0.85351 0.93496 1.06477 1.70629 1.19163 1.10566 1.17434 1.20514 0.92939 0.90386 1.13969 1.16185 0.79900 0.85675 0.75622 1.90798 1.85781 1.13198 1.51478 1.48989 1.03806 1.09760 1.72653 1.23127 0.92272 0.85710 0.99864 1.22957 0.98379 0.96063 0.97099 0.88416 1.21363 1.02754 0.97150 0.91525 1.22042 0.93191 0.89561 1.01931 1.59985 1.59998 1.02661 1.01456 1.21751 0.98262 0.92437 0.95306 1.19777 0.85272 0.84838 0.86738 1.90484 1.44904 1.34484 1.75972 1.41874 1.50903 1.16488 1.11272 1.19732 1.32983 1.03259 0.86395 0.87974 1.25240 0.97368 0.95189 1.00323 1.69627 1.41387 1.06418 1.37145 0.85822 0.78320 0.78352 0.81965 1.19290 1.20835 1.20864 1.21370 0.99664 0.97418 0.88659 1.21879 0.80620 0.94733 0.98450 0.89616 1.22599 0.90220 0.93195 1.04737 0.90033 0.89148 0.89319 0.77423 0.90527 0.89218 0.91435 0.90500 0.96251 0.88038 0.89498 0.93680 0.77544 0.92064 0.95039 0.89251 0.79546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.15 59.85 0.67 0.93 16 2 N -0.46 -4.00 3.13 -125.78 -0.39 -4.40 16 3 C 0.18 1.65 12.55 -89.91 -1.13 0.52 16 4 N -0.46 -5.96 9.81 -11.03 -0.11 -6.07 16 5 C -0.05 -0.73 6.95 -83.09 -0.58 -1.31 16 6 C 0.64 11.05 7.99 -12.56 -0.10 10.95 16 7 O -0.54 -10.87 16.26 5.26 0.09 -10.79 16 8 N -0.62 -9.26 3.38 -186.31 -0.63 -9.89 16 9 C 0.11 1.31 7.15 -10.49 -0.08 1.24 16 10 C -0.13 -1.46 4.62 -90.39 -0.42 -1.88 16 11 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.09 -1.31 5.75 -26.61 -0.15 -1.47 16 13 C 0.06 1.05 5.08 -4.05 -0.02 1.03 16 14 N -0.52 -9.76 4.29 -239.04 -1.03 -10.78 16 15 C 0.05 1.07 5.43 -4.98 -0.03 1.04 16 16 C 0.45 11.29 7.41 -10.99 -0.08 11.21 16 17 O -0.57 -16.28 13.97 5.55 0.08 -16.20 16 18 N -0.57 -15.16 5.29 -10.96 -0.06 -15.22 16 19 C -0.29 -8.51 9.68 -14.93 -0.14 -8.65 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 22 N -0.90 -25.48 13.05 55.50 0.72 -24.75 16 23 Si 0.93 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.06 0.91 4.98 -5.71 -0.03 0.88 16 28 C 0.15 1.95 4.05 -76.62 -0.31 1.64 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 C 0.03 0.37 11.26 -16.64 -0.19 0.19 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.11 7.32 -51.93 -0.38 0.73 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 2.14 5.79 -51.93 -0.30 1.84 16 41 H 0.09 1.67 8.03 -51.93 -0.42 1.25 16 42 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.39 10.03 7.90 -40.82 -0.32 9.71 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.09 1.59 6.97 -51.93 -0.36 1.23 16 47 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -38.11 386.23 -9.97 -48.09 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.76 Total: 10.69 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -2.68 Total: 16.78 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.49 Total: -71.10 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.16 Total: -26.99 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.11 -9.97 -48.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221478116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.216 kcal (2) G-P(sol) polarization free energy of solvation -38.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds