Wall clock time and date at job start Wed Apr 1 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34494 * 126.47076 * 2 1 4 4 N 1.30863 * 109.16246 * 179.97438 * 3 2 1 5 5 C 1.33329 * 109.68237 * 359.76435 * 4 3 2 6 6 C 1.36664 * 107.78558 * 0.37505 * 5 4 3 7 7 C 1.46759 * 126.84274 * 179.89558 * 6 5 4 8 8 O 1.21679 * 119.99948 * 185.65307 * 7 6 5 9 9 N 1.34775 * 119.99823 * 5.65784 * 7 6 5 10 10 C 1.47745 * 134.86870 * 355.54175 * 9 7 6 11 11 C 1.54475 * 85.89570 * 154.43770 * 10 9 7 12 12 H 1.09004 * 114.49309 * 139.50517 * 11 10 9 13 13 C 1.53094 * 111.27938 * 270.26127 * 11 10 9 14 14 C 1.53059 * 109.00793 * 140.26179 * 13 11 10 15 15 N 1.46479 * 108.86636 * 297.39605 * 14 13 11 16 16 C 1.46901 * 111.00329 * 191.02824 * 15 14 13 17 17 C 1.50701 * 109.47102 * 66.04633 * 16 15 14 18 18 O 1.21292 * 119.99965 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00055 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99840 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00041 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99587 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99706 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47340 * 89.99413 * 24 22 20 26 26 H 1.48504 * 109.47053 * 209.99626 * 24 22 20 27 27 H 1.48505 * 109.46794 * 329.99541 * 24 22 20 28 28 C 1.45460 * 112.85280 * 65.69389 * 15 14 13 29 29 C 1.46993 * 134.86040 * 175.59552 * 9 7 6 30 30 H 1.09000 * 111.34024 * 93.53920 * 29 9 7 31 31 H 1.09006 * 109.46845 * 274.85294 * 1 2 3 32 32 H 1.09001 * 109.47223 * 34.85255 * 1 2 3 33 33 H 1.08996 * 109.46997 * 154.85354 * 1 2 3 34 34 H 1.08001 * 125.42099 * 359.97438 * 3 2 1 35 35 H 1.07995 * 126.10237 * 180.27399 * 5 4 3 36 36 H 1.09003 * 113.79924 * 40.18954 * 10 9 7 37 37 H 1.08998 * 113.91044 * 268.69603 * 10 9 7 38 38 H 1.09009 * 109.42093 * 20.48353 * 13 11 10 39 39 H 1.09000 * 109.67216 * 260.19849 * 13 11 10 40 40 H 1.09005 * 109.59044 * 177.54245 * 14 13 11 41 41 H 1.09000 * 109.59179 * 57.24834 * 14 13 11 42 42 H 1.08998 * 109.47211 * 186.04546 * 16 15 14 43 43 H 1.08996 * 109.47094 * 306.04890 * 16 15 14 44 44 H 0.96998 * 119.99841 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00306 * 180.02562 * 23 22 20 46 46 H 1.08997 * 108.49665 * 72.51063 * 28 15 14 47 47 H 1.09002 * 108.49816 * 190.12471 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 0.0006 5 6 3.5691 -0.6399 0.0061 6 6 2.2862 -1.1109 0.0007 7 6 1.8649 -2.5168 0.0016 8 8 0.6863 -2.7988 -0.1075 9 7 2.7835 -3.4954 0.1235 10 6 4.2588 -3.5377 0.1905 11 6 4.0751 -4.8633 0.9620 12 1 4.7860 -5.6448 0.6934 13 6 3.9673 -4.6186 2.4694 14 6 2.9025 -5.5516 3.0511 15 7 1.6073 -5.2254 2.4498 16 6 0.5129 -5.9054 3.1554 17 6 0.4046 -5.3619 4.5569 18 8 1.1646 -4.4938 4.9311 19 7 -0.5361 -5.8411 5.3947 20 6 -0.6342 -5.3470 6.6698 21 1 0.0419 -4.5735 7.0027 22 6 -1.6044 -5.8407 7.5333 23 7 -1.6989 -5.3668 8.7554 24 14 -2.7744 -7.1781 6.9572 25 1 -2.1880 -8.5099 7.2527 26 1 -4.0718 -7.0400 7.6665 27 1 -2.9937 -7.0473 5.4942 28 6 1.5605 -5.5046 1.0230 29 6 2.7291 -4.9594 0.2434 30 1 2.8211 -5.4408 -0.7302 31 1 -0.3633 0.0869 1.0241 32 1 -0.3634 0.8433 -0.5873 33 1 -0.3633 -0.9302 -0.4367 34 1 1.9288 2.1081 -0.0004 35 1 4.4672 -1.2395 0.0120 36 1 4.6951 -2.7375 0.7884 37 1 4.7419 -3.6564 -0.7794 38 1 3.6813 -3.5821 2.6488 39 1 4.9278 -4.8207 2.9435 40 1 2.8485 -5.4161 4.1313 41 1 3.1602 -6.5863 2.8249 42 1 -0.4238 -5.7328 2.6254 43 1 0.7160 -6.9755 3.1955 44 1 -1.1431 -6.5361 5.0957 45 1 -2.3759 -5.7116 9.3584 46 1 1.5252 -6.5850 0.8831 47 1 0.6453 -5.0743 0.6162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221672595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:17 Heat of formation + Delta-G solvation = 60.103866 kcal Electronic energy + Delta-G solvation = -31418.945470 eV Core-core repulsion = 27219.164646 eV Total energy + Delta-G solvation = -4199.780824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.35201 -41.07326 -38.68713 -37.92727 -36.13209 -34.17710 -33.86885 -32.15914 -31.60737 -30.99959 -29.24635 -28.37808 -27.24778 -26.07386 -24.19178 -23.92088 -22.79472 -21.81608 -21.37449 -20.03299 -19.34373 -18.41436 -18.27976 -17.49906 -16.61425 -16.46752 -15.97438 -15.87881 -15.80891 -15.09352 -14.87258 -14.70255 -14.39212 -14.14008 -13.92916 -13.76797 -13.63926 -13.36123 -13.11724 -13.02737 -12.92468 -12.83680 -12.59018 -12.44048 -12.20506 -11.87043 -11.70164 -11.44670 -11.16169 -11.03601 -10.61426 -10.55690 -10.45412 -10.30430 -9.95847 -9.88218 -9.69968 -9.50467 -8.91161 -8.67363 -8.48129 -8.15144 -7.81757 -6.29155 -3.80236 1.22809 2.20389 2.72648 2.88835 3.04468 3.07780 3.16015 3.29601 3.77339 3.82905 4.11622 4.13671 4.17293 4.41054 4.62381 4.63997 4.72764 4.79537 4.88046 4.99802 5.06825 5.10349 5.14962 5.17090 5.23541 5.25934 5.38962 5.41761 5.48814 5.52530 5.69165 5.72826 5.76250 5.88166 5.92375 5.98063 6.02545 6.07057 6.32686 6.40027 6.45903 6.86749 7.25354 7.47802 7.58004 7.61712 7.70797 8.10160 8.17042 8.63031 8.97701 9.45078 9.86814 10.84102 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.002994 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.024474 B = 9350.511245 C =10373.525668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.426 5.426 3 C 0.201 3.799 4 N -0.499 5.499 5 C 0.028 3.972 6 C -0.074 4.074 7 C 0.625 3.375 8 O -0.541 6.541 9 N -0.620 5.620 10 C 0.093 3.907 11 C -0.116 4.116 12 H 0.098 0.902 13 C -0.094 4.094 14 C 0.057 3.943 15 N -0.517 5.517 16 C 0.050 3.950 17 C 0.455 3.545 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.056 3.944 29 C 0.154 3.846 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.212 0.788 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.023 0.977 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.036 0.964 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 2.531 -22.267 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.106 5.106 3 C -0.081 4.081 4 N -0.217 5.217 5 C -0.126 4.126 6 C -0.191 4.191 7 C 0.415 3.585 8 O -0.419 6.419 9 N -0.355 5.355 10 C -0.029 4.029 11 C -0.135 4.135 12 H 0.116 0.884 13 C -0.132 4.132 14 C -0.070 4.070 15 N -0.241 5.241 16 C -0.081 4.081 17 C 0.240 3.760 18 O -0.439 6.439 19 N -0.232 5.232 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.073 4.073 29 C 0.051 3.949 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.228 0.772 35 H 0.196 0.804 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.041 0.959 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.617 4.157 -21.837 24.220 hybrid contribution -1.796 -2.273 -0.437 2.930 sum 7.821 1.884 -22.274 23.682 Atomic orbital electron populations 1.22368 0.75140 1.05946 1.04496 1.45260 1.08437 1.05755 1.51123 1.25110 0.85629 0.93626 1.03703 1.70149 1.19068 1.12177 1.20340 1.22869 0.95404 0.91277 1.03049 1.20725 0.91487 0.88789 1.18145 1.16171 0.84346 0.82189 0.75818 1.90752 1.16598 1.83455 1.51138 1.49334 1.06960 1.06636 1.72583 1.23706 0.80904 0.98106 1.00199 1.23080 0.96159 0.97278 0.97030 0.88396 1.21410 0.98608 1.01837 0.91328 1.22091 0.87691 0.95255 1.01978 1.60130 1.03132 1.60211 1.00664 1.21795 0.95425 0.95869 0.95019 1.19644 0.84052 0.86096 0.86173 1.90530 1.43744 1.32736 1.76879 1.42216 1.31171 1.36727 1.13130 1.19416 1.17259 1.20830 0.85623 0.86324 1.25028 0.97659 0.98103 0.95394 1.69623 1.34753 1.42424 1.05513 0.86681 0.81516 0.82448 0.78812 1.19676 1.20210 1.19487 1.21306 0.99269 0.97916 0.88770 1.22072 0.94903 0.79780 0.98131 0.89014 0.89807 0.89553 0.87334 0.77198 0.80434 0.89171 0.89231 0.90366 0.90939 0.87798 0.95898 0.89393 0.93394 0.79770 0.91670 0.94614 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 10.87 59.85 0.65 1.25 16 2 N -0.43 -5.11 3.17 -121.97 -0.39 -5.50 16 3 C 0.20 2.16 12.52 -90.57 -1.13 1.03 16 4 N -0.50 -6.43 11.20 -14.43 -0.16 -6.59 16 5 C 0.03 0.34 10.95 -17.47 -0.19 0.15 16 6 C -0.07 -1.01 6.91 -82.14 -0.57 -1.58 16 7 C 0.62 9.18 7.92 -12.82 -0.10 9.08 16 8 O -0.54 -9.35 14.10 5.21 0.07 -9.27 16 9 N -0.62 -7.35 3.37 -174.74 -0.59 -7.94 16 10 C 0.09 0.74 6.60 -2.88 -0.02 0.72 16 11 C -0.12 -1.02 4.43 -89.92 -0.40 -1.41 16 12 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 13 C -0.09 -1.13 5.74 -26.65 -0.15 -1.28 16 14 C 0.06 0.86 5.08 -4.02 -0.02 0.84 16 15 N -0.52 -8.47 4.31 -239.07 -1.03 -9.50 16 16 C 0.05 0.88 5.42 -4.97 -0.03 0.85 16 17 C 0.45 10.49 7.40 -10.99 -0.08 10.41 16 18 O -0.56 -14.94 13.98 5.55 0.08 -14.87 16 19 N -0.59 -14.33 5.09 -10.96 -0.06 -14.39 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 24 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 28 C 0.06 0.74 5.03 -5.76 -0.03 0.71 16 29 C 0.15 1.62 4.29 -69.17 -0.30 1.32 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 1.26 6.14 -51.93 -0.32 0.94 16 34 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.18 1.70 5.18 -52.49 -0.27 1.43 16 36 H 0.09 0.70 6.02 -51.93 -0.31 0.38 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.16 7.69 -51.92 -0.40 0.76 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.97 5.78 -51.93 -0.30 1.67 16 41 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 1.44 8.04 -51.93 -0.42 1.02 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 44 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.04 0.40 8.08 -51.93 -0.42 -0.01 16 47 H 0.09 1.39 6.87 -51.93 -0.36 1.04 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -37.58 374.90 -9.37 -46.95 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.39 Total: 11.47 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -2.62 Total: 14.34 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.45 Total: -69.15 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.15 Total: -24.14 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.58 -9.37 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221672595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.056 kcal (2) G-P(sol) polarization free energy of solvation -37.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds