Wall clock time and date at job start Wed Apr 1 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34494 * 126.47076 * 2 1 4 4 N 1.30863 * 109.16246 * 179.97438 * 3 2 1 5 5 C 1.33329 * 109.68237 * 359.76435 * 4 3 2 6 6 C 1.36664 * 107.78558 * 0.37505 * 5 4 3 7 7 C 1.46759 * 126.84274 * 179.89558 * 6 5 4 8 8 O 1.21679 * 119.99948 * 185.65307 * 7 6 5 9 9 N 1.34775 * 119.99823 * 5.65784 * 7 6 5 10 10 C 1.47745 * 134.86870 * 355.54175 * 9 7 6 11 11 C 1.54475 * 85.89570 * 154.43770 * 10 9 7 12 12 H 1.09004 * 114.49309 * 139.50517 * 11 10 9 13 13 C 1.53094 * 111.27938 * 270.26127 * 11 10 9 14 14 C 1.53059 * 109.00793 * 140.26179 * 13 11 10 15 15 N 1.46479 * 108.86636 * 297.39605 * 14 13 11 16 16 C 1.46901 * 111.00329 * 191.02824 * 15 14 13 17 17 C 1.50701 * 109.47102 * 66.04633 * 16 15 14 18 18 O 1.21292 * 119.99965 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00055 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99840 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00041 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99587 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99706 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47340 * 89.99413 * 24 22 20 26 26 H 1.48504 * 109.47053 * 209.99626 * 24 22 20 27 27 H 1.48505 * 109.46794 * 329.99541 * 24 22 20 28 28 C 1.45460 * 112.85280 * 65.69389 * 15 14 13 29 29 C 1.46993 * 134.86040 * 175.59552 * 9 7 6 30 30 H 1.09000 * 111.34024 * 93.53920 * 29 9 7 31 31 H 1.09006 * 109.46845 * 274.85294 * 1 2 3 32 32 H 1.09001 * 109.47223 * 34.85255 * 1 2 3 33 33 H 1.08996 * 109.46997 * 154.85354 * 1 2 3 34 34 H 1.08001 * 125.42099 * 359.97438 * 3 2 1 35 35 H 1.07995 * 126.10237 * 180.27399 * 5 4 3 36 36 H 1.09003 * 113.79924 * 40.18954 * 10 9 7 37 37 H 1.08998 * 113.91044 * 268.69603 * 10 9 7 38 38 H 1.09009 * 109.42093 * 20.48353 * 13 11 10 39 39 H 1.09000 * 109.67216 * 260.19849 * 13 11 10 40 40 H 1.09005 * 109.59044 * 177.54245 * 14 13 11 41 41 H 1.09000 * 109.59179 * 57.24834 * 14 13 11 42 42 H 1.08998 * 109.47211 * 186.04546 * 16 15 14 43 43 H 1.08996 * 109.47094 * 306.04890 * 16 15 14 44 44 H 0.96998 * 119.99841 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00306 * 180.02562 * 23 22 20 46 46 H 1.08997 * 108.49665 * 72.51063 * 28 15 14 47 47 H 1.09002 * 108.49816 * 190.12471 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 0.0006 5 6 3.5691 -0.6399 0.0061 6 6 2.2862 -1.1109 0.0007 7 6 1.8649 -2.5168 0.0016 8 8 0.6863 -2.7988 -0.1075 9 7 2.7835 -3.4954 0.1235 10 6 4.2588 -3.5377 0.1905 11 6 4.0751 -4.8633 0.9620 12 1 4.7860 -5.6448 0.6934 13 6 3.9673 -4.6186 2.4694 14 6 2.9025 -5.5516 3.0511 15 7 1.6073 -5.2254 2.4498 16 6 0.5129 -5.9054 3.1554 17 6 0.4046 -5.3619 4.5569 18 8 1.1646 -4.4938 4.9311 19 7 -0.5361 -5.8411 5.3947 20 6 -0.6342 -5.3470 6.6698 21 1 0.0419 -4.5735 7.0027 22 6 -1.6044 -5.8407 7.5333 23 7 -1.6989 -5.3668 8.7554 24 14 -2.7744 -7.1781 6.9572 25 1 -2.1880 -8.5099 7.2527 26 1 -4.0718 -7.0400 7.6665 27 1 -2.9937 -7.0473 5.4942 28 6 1.5605 -5.5046 1.0230 29 6 2.7291 -4.9594 0.2434 30 1 2.8211 -5.4408 -0.7302 31 1 -0.3633 0.0869 1.0241 32 1 -0.3634 0.8433 -0.5873 33 1 -0.3633 -0.9302 -0.4367 34 1 1.9288 2.1081 -0.0004 35 1 4.4672 -1.2395 0.0120 36 1 4.6951 -2.7375 0.7884 37 1 4.7419 -3.6564 -0.7794 38 1 3.6813 -3.5821 2.6488 39 1 4.9278 -4.8207 2.9435 40 1 2.8485 -5.4161 4.1313 41 1 3.1602 -6.5863 2.8249 42 1 -0.4238 -5.7328 2.6254 43 1 0.7160 -6.9755 3.1955 44 1 -1.1431 -6.5361 5.0957 45 1 -2.3759 -5.7116 9.3584 46 1 1.5252 -6.5850 0.8831 47 1 0.6453 -5.0743 0.6162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221672595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:16 Heat of formation + Delta-G solvation = 30.729892 kcal Electronic energy + Delta-G solvation = -31420.219222 eV Core-core repulsion = 27219.164646 eV Total energy + Delta-G solvation = -4201.054575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.23004 -41.96244 -40.38461 -39.07590 -37.40861 -35.91598 -35.03535 -33.79880 -33.10744 -31.95392 -30.40425 -29.36767 -28.08269 -27.52636 -25.58969 -25.14092 -23.73464 -22.82789 -22.23606 -21.30774 -20.93839 -20.24943 -19.31849 -18.41778 -17.75986 -17.54771 -17.21915 -16.94762 -16.78974 -16.66656 -16.40444 -15.89768 -15.56737 -15.27179 -15.12714 -14.95415 -14.74152 -14.68257 -14.49793 -14.16831 -14.11805 -13.87213 -13.72302 -13.62667 -13.24200 -13.23341 -13.02646 -12.76971 -12.44680 -12.41627 -12.04759 -12.00660 -11.72654 -11.42974 -11.36346 -11.22781 -10.78675 -10.67953 -10.38345 -10.24572 -9.82377 -9.49649 -9.04601 -8.43417 -6.03973 0.30830 1.27844 1.32522 1.38478 1.41631 1.83685 1.93748 2.08264 2.20498 2.32906 2.56431 3.12508 3.17307 3.31182 3.38046 3.68848 3.83692 3.89319 3.93136 4.02817 4.07692 4.16229 4.27389 4.29299 4.33294 4.34946 4.42530 4.47751 4.50763 4.58474 4.63746 4.64979 4.72877 4.81025 4.98228 4.99266 5.07028 5.20309 5.26977 5.42832 5.46141 5.52244 5.89241 6.06252 6.08356 6.38231 6.58309 6.68205 6.81543 6.86410 7.12369 7.37710 7.95319 8.74406 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.002994 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.024474 B = 9350.511245 C =10373.525668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.436 5.436 3 C 0.211 3.789 4 N -0.529 5.529 5 C 0.032 3.968 6 C -0.108 4.108 7 C 0.611 3.389 8 O -0.584 6.584 9 N -0.627 5.627 10 C 0.097 3.903 11 C -0.100 4.100 12 H 0.144 0.856 13 C -0.091 4.091 14 C 0.059 3.941 15 N -0.545 5.545 16 C 0.062 3.938 17 C 0.453 3.547 18 O -0.603 6.603 19 N -0.593 5.593 20 C -0.326 4.326 21 H 0.054 0.946 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.236 1.236 28 C 0.058 3.942 29 C 0.144 3.856 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.200 0.800 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.246 0.320 -25.692 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.116 5.116 3 C -0.071 4.071 4 N -0.247 5.247 5 C -0.122 4.122 6 C -0.225 4.225 7 C 0.402 3.598 8 O -0.466 6.466 9 N -0.361 5.361 10 C -0.024 4.024 11 C -0.119 4.119 12 H 0.161 0.839 13 C -0.128 4.128 14 C -0.068 4.068 15 N -0.271 5.271 16 C -0.069 4.069 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.072 0.928 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.160 1.160 28 C -0.070 4.070 29 C 0.042 3.958 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.267 0.733 35 H 0.216 0.784 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.304 1.923 -25.289 27.375 hybrid contribution -1.879 -1.449 0.707 2.476 sum 8.425 0.474 -24.582 25.989 Atomic orbital electron populations 1.22415 0.74300 1.06489 1.04504 1.45506 1.09175 1.05810 1.51140 1.25955 0.85042 0.94847 1.01268 1.70181 1.20272 1.12440 1.21815 1.23249 0.95730 0.91422 1.01778 1.20921 0.92403 0.89023 1.20130 1.16491 0.84374 0.83143 0.75786 1.90712 1.18246 1.84159 1.53479 1.49599 1.08464 1.06948 1.71044 1.24004 0.78749 0.97531 1.02104 1.22999 0.96033 0.98961 0.93913 0.83862 1.21351 0.98305 0.98734 0.94449 1.21983 0.88187 0.97524 0.99148 1.60022 1.03193 1.61278 1.02581 1.21682 0.96965 0.97364 0.90892 1.20850 0.82247 0.84762 0.88101 1.90516 1.45157 1.34678 1.78336 1.42044 1.32234 1.37464 1.11796 1.18978 1.17473 1.20822 0.88281 0.92792 1.26095 0.99314 1.00956 0.94944 1.69804 1.35976 1.44451 1.07309 0.85371 0.77811 0.78267 0.80111 1.17800 1.19927 1.15956 1.21312 0.99628 0.99628 0.86435 1.22438 0.94578 0.79127 0.99633 0.85344 0.90639 0.85545 0.89583 0.73255 0.78382 0.89351 0.85166 0.94259 0.88974 0.92844 0.93153 0.87979 0.89920 0.77649 0.91132 0.91775 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 10.87 127.77 1.39 2.66 16 2 N -0.44 -10.49 3.17 -539.80 -1.71 -12.20 16 3 C 0.21 4.29 12.52 180.33 2.26 6.55 16 4 N -0.53 -13.16 11.20 -199.55 -2.24 -15.39 16 5 C 0.03 0.77 10.95 84.10 0.92 1.69 16 6 C -0.11 -2.97 6.91 40.01 0.28 -2.69 16 7 C 0.61 18.26 7.92 86.47 0.68 18.95 16 8 O -0.58 -21.06 14.10 -4.28 -0.06 -21.12 16 9 N -0.63 -13.95 3.37 -824.98 -2.78 -16.73 16 10 C 0.10 1.23 6.60 86.45 0.57 1.80 16 11 C -0.10 -1.37 4.43 -10.28 -0.05 -1.41 16 12 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 13 C -0.09 -2.08 5.74 30.65 0.18 -1.90 16 14 C 0.06 1.74 5.08 86.40 0.44 2.18 16 15 N -0.55 -17.61 4.31 -910.27 -3.92 -21.53 16 16 C 0.06 2.11 5.42 85.56 0.46 2.57 16 17 C 0.45 21.59 7.40 87.66 0.65 22.23 16 18 O -0.60 -34.68 13.98 -3.07 -0.04 -34.72 16 19 N -0.59 -29.25 5.09 -306.99 -1.56 -30.81 16 20 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 21 H 0.05 3.87 7.39 -2.91 -0.02 3.84 16 22 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.93 -57.39 13.96 21.66 0.30 -57.08 16 24 Si 0.96 39.89 27.74 68.60 1.90 41.79 16 25 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.24 -8.42 6.52 99.48 0.65 -7.77 16 28 C 0.06 1.40 5.03 85.83 0.43 1.83 16 29 C 0.14 2.58 4.29 43.92 0.19 2.77 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 2.14 6.14 -2.39 -0.01 2.12 16 34 H 0.25 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.20 3.52 5.18 -2.91 -0.02 3.51 16 36 H 0.09 1.17 6.02 -2.39 -0.01 1.16 16 37 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.04 1.20 7.69 -2.38 -0.02 1.18 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 2.13 5.78 -2.38 -0.01 2.12 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.10 3.19 8.04 -2.39 -0.02 3.17 16 43 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 44 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 47 H 0.07 1.97 6.87 -2.39 -0.02 1.96 16 Total: -1.00 -93.19 374.90 0.04 -93.15 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.43 Total: 36.60 kcal Atomic # 6 Polarization: 28.32 SS G_CDS: 9.72 Total: 38.04 kcal Atomic # 7 Polarization: -141.83 SS G_CDS: -11.91 Total: -153.75 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.10 Total: -55.84 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -93.19 0.04 -93.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221672595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.880 kcal (2) G-P(sol) polarization free energy of solvation -93.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds