Wall clock time and date at job start Wed Apr 1 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35950 * 117.00258 * 2 1 4 4 C 1.39683 * 119.64736 * 0.02562 * 3 2 1 5 5 C 1.36091 * 120.95802 * 180.02562 * 4 3 2 6 6 C 1.40521 * 119.83103 * 0.27496 * 5 4 3 7 7 N 1.33956 * 120.92165 * 180.27760 * 6 5 4 8 8 C 1.31645 * 121.40707 * 179.76145 * 7 6 5 9 9 O 1.35612 * 119.15254 * 179.72822 * 8 7 6 10 10 C 1.39652 * 121.68486 * 359.70805 * 8 7 6 11 11 C 1.36983 * 119.83347 * 359.97438 * 10 8 7 12 12 O 1.35623 * 120.92832 * 179.97438 * 11 10 8 13 13 C 1.42901 * 116.99677 * 5.70224 * 12 11 10 14 14 H 1.08996 * 109.47144 * 33.28415 * 13 12 11 15 15 C 1.50699 * 109.47213 * 273.28166 * 13 12 11 16 16 H 1.08005 * 119.99394 * 120.00058 * 15 13 12 17 17 C 1.37876 * 119.99922 * 299.99908 * 15 13 12 18 18 N 1.31507 * 120.00198 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99533 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47185 * 120.00422 * 19 17 15 22 22 H 1.48500 * 109.46997 * 240.00146 * 19 17 15 23 23 C 1.52994 * 109.47020 * 153.28208 * 13 12 11 24 24 N 1.46904 * 109.47542 * 294.60810 * 23 13 12 25 25 C 1.46901 * 109.46908 * 64.63616 * 24 23 13 26 26 C 1.46893 * 109.47688 * 184.63770 * 24 23 13 27 27 C 1.46901 * 109.46840 * 304.63985 * 24 23 13 28 28 C 1.41481 * 119.18628 * 359.47441 * 6 5 4 29 29 C 1.36687 * 119.64668 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46805 * 299.99725 * 1 2 3 31 31 H 1.08999 * 109.47824 * 59.99385 * 1 2 3 32 32 H 1.09001 * 109.47520 * 180.02562 * 1 2 3 33 33 H 1.08003 * 119.52109 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.08585 * 180.02562 * 5 4 3 35 35 H 0.96705 * 113.99608 * 269.97679 * 9 8 7 36 36 H 1.08008 * 120.08417 * 180.02562 * 10 8 7 37 37 H 0.96997 * 120.00031 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.47040 * 54.60511 * 23 13 12 39 39 H 1.09004 * 109.47646 * 174.60799 * 23 13 12 40 40 H 1.08991 * 109.47391 * 52.05265 * 25 24 23 41 41 H 1.08997 * 109.46826 * 172.05551 * 25 24 23 42 42 H 1.09001 * 109.47287 * 292.05109 * 25 24 23 43 43 H 1.09003 * 109.46949 * 59.99596 * 26 24 23 44 44 H 1.08998 * 109.47545 * 179.97438 * 26 24 23 45 45 H 1.08998 * 109.47223 * 299.99984 * 26 24 23 46 46 H 1.08998 * 109.47310 * 59.99586 * 27 24 23 47 47 H 1.09000 * 109.47467 * 179.97438 * 27 24 23 48 48 H 1.08998 * 109.47271 * 300.00015 * 27 24 23 49 49 H 1.07994 * 120.19896 * 359.97180 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2783 2.3781 0.0005 5 6 1.8683 3.6045 0.0000 6 6 3.2699 3.7059 -0.0069 7 7 3.8735 4.9017 -0.0020 8 6 5.1857 5.0078 -0.0037 9 8 5.7487 6.2416 -0.0041 10 6 6.0126 3.8825 -0.0047 11 6 5.4585 2.6297 -0.0033 12 8 6.2406 1.5216 -0.0048 13 6 7.6500 1.7223 0.1188 14 1 7.8395 2.5902 0.7503 15 6 8.2459 1.9542 -1.2458 16 1 8.7627 2.8783 -1.4594 17 6 8.1315 0.9868 -2.2216 18 7 7.5018 -0.1381 -1.9616 19 14 8.8708 1.2742 -3.9128 20 1 9.5213 2.6086 -3.9485 21 1 9.8813 0.2236 -4.1963 22 1 7.7979 1.2184 -4.9380 23 6 8.2881 0.4833 0.7500 24 7 7.8032 0.3310 2.1283 25 6 6.3580 0.0679 2.1127 26 6 8.4984 -0.7923 2.7708 27 6 8.0681 1.5651 2.8797 28 6 4.0472 2.5238 -0.0019 29 6 3.4117 1.2744 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2007 2.3060 0.0005 34 1 1.2609 4.4975 0.0009 35 1 5.9111 6.5994 -0.8877 36 1 7.0863 3.9996 -0.0057 37 1 7.4210 -0.8185 -2.6482 38 1 8.0183 -0.3996 0.1703 39 1 9.3722 0.5962 0.7567 40 1 6.1474 -0.7640 1.4407 41 1 6.0238 -0.1843 3.1190 42 1 5.8306 0.9568 1.7667 43 1 9.5708 -0.5971 2.7823 44 1 8.1390 -0.9050 3.7936 45 1 8.3019 -1.7080 2.2133 46 1 7.5522 2.3986 2.4030 47 1 7.7079 1.4524 3.9023 48 1 9.1404 1.7604 2.8913 49 1 3.9974 0.3670 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226932821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:14 Heat of formation + Delta-G solvation = 56.420921 kcal Electronic energy + Delta-G solvation = -32769.926134 eV Core-core repulsion = 28589.463025 eV Total energy + Delta-G solvation = -4180.463108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.180 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -43.47945 -41.92103 -40.38352 -39.31002 -38.30708 -35.75797 -35.03118 -33.25618 -31.66714 -31.07326 -30.44109 -30.24962 -30.06157 -28.01385 -27.85724 -25.38355 -24.66432 -24.11347 -23.08800 -22.40925 -20.20680 -19.37988 -19.15318 -18.92228 -18.61621 -18.30186 -18.14232 -17.31310 -16.91819 -16.72873 -16.64943 -16.32619 -15.92382 -15.54588 -15.32722 -15.08173 -14.85514 -14.77694 -14.63291 -14.36388 -14.18068 -14.13176 -14.01105 -13.98792 -13.83620 -13.61983 -13.47010 -13.11439 -12.95434 -12.78333 -12.48547 -12.43298 -12.24007 -11.97577 -11.94060 -11.35426 -11.33190 -11.16749 -10.32996 -10.22571 -10.21337 -9.39453 -8.41626 -7.90141 -6.12884 -0.31979 -0.04537 0.23860 1.21876 1.97243 2.00307 2.10954 2.19258 2.21213 2.26517 2.29837 2.36824 2.44995 2.85632 2.91709 3.09405 3.14945 3.28930 3.34557 3.41983 3.56033 3.60650 3.67865 3.70644 3.72856 3.73765 3.82864 3.96412 4.01919 4.04431 4.13702 4.17300 4.21888 4.25107 4.31599 4.33529 4.58114 4.65458 4.71129 4.75587 4.93595 5.09798 5.21714 5.35017 5.39193 5.45221 5.76254 5.94302 6.12286 6.44412 6.53867 6.76188 7.06004 7.21564 7.73099 9.12303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.107 3.893 4 C -0.160 4.160 5 C -0.067 4.067 6 C 0.150 3.850 7 N -0.523 5.523 8 C 0.369 3.631 9 O -0.486 6.486 10 C -0.286 4.286 11 C 0.218 3.782 12 O -0.290 6.290 13 C 0.187 3.813 14 H 0.053 0.947 15 C -0.565 4.565 16 H 0.082 0.918 17 C 0.093 3.907 18 N -0.858 5.858 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.001 4.001 24 N -0.273 5.273 25 C -0.045 4.045 26 C -0.040 4.040 27 C -0.048 4.048 28 C -0.100 4.100 29 C -0.112 4.112 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.405 0.595 36 H 0.151 0.849 37 H 0.281 0.719 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -4.909 14.383 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.062 3.938 4 C -0.181 4.181 5 C -0.086 4.086 6 C 0.029 3.971 7 N -0.246 5.246 8 C 0.177 3.823 9 O -0.294 6.294 10 C -0.308 4.308 11 C 0.163 3.837 12 O -0.200 6.200 13 C 0.134 3.866 14 H 0.071 0.929 15 C -0.601 4.601 16 H 0.100 0.900 17 C -0.118 4.118 18 N -0.491 5.491 19 Si 0.730 3.270 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.120 4.120 24 N 0.068 4.932 25 C -0.186 4.186 26 C -0.182 4.182 27 C -0.190 4.190 28 C -0.103 4.103 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.263 0.737 36 H 0.169 0.831 37 H 0.091 0.909 38 H 0.178 0.822 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.136 0.864 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.510 -4.876 14.899 15.685 hybrid contribution 0.767 -0.216 -1.687 1.866 sum 1.277 -5.092 13.212 14.217 Atomic orbital electron populations 1.23090 0.78266 1.04203 1.01401 1.86113 1.21421 1.26474 1.88999 1.18593 0.92116 0.84306 0.98774 1.21125 1.00656 0.92001 1.04274 1.20570 0.91987 0.97803 0.98250 1.18245 0.93572 0.86315 0.98947 1.67528 1.11441 1.26567 1.19096 1.18953 0.86618 0.84787 0.91960 1.84683 1.80317 1.30093 1.34300 1.21785 1.02631 0.91522 1.14885 1.18595 0.89182 0.86804 0.89143 1.86267 1.20987 1.28847 1.83948 1.20519 0.77099 0.90721 0.98309 0.92924 1.21240 1.39351 1.05016 0.94476 0.90016 1.25047 0.92409 0.94210 1.00166 1.69595 1.37001 1.06597 1.35906 0.86262 0.79505 0.79467 0.81804 1.18914 1.19896 1.19881 1.24874 1.02524 1.08853 0.75706 1.46393 1.15601 1.13926 1.17239 1.24374 0.77651 1.09843 1.06725 1.24008 1.01425 0.90910 1.01870 1.24089 1.07629 0.87730 0.99578 1.18033 0.90828 0.94310 1.07104 1.19975 0.91533 0.97380 1.04263 0.92594 0.92497 0.88093 0.84606 0.84094 0.73682 0.83109 0.90920 0.82161 0.85624 0.85952 0.88001 0.85266 0.86769 0.87136 0.86424 0.86459 0.87000 0.86426 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.80 101.05 0.99 0.95 16 2 O -0.32 -0.66 10.48 -19.58 -0.21 -0.86 16 3 C 0.11 0.27 6.64 -39.60 -0.26 0.01 16 4 C -0.16 -0.24 8.94 -39.81 -0.36 -0.60 16 5 C -0.07 -0.19 9.97 -39.49 -0.39 -0.58 16 6 C 0.15 0.71 6.60 -84.85 -0.56 0.15 16 7 N -0.52 -3.01 10.37 -11.12 -0.12 -3.13 16 8 C 0.37 1.63 7.71 -17.10 -0.13 1.50 16 9 O -0.49 -1.45 13.54 -18.53 -0.25 -1.70 16 10 C -0.29 -0.90 8.69 -39.51 -0.34 -1.24 16 11 C 0.22 0.66 6.01 -38.78 -0.23 0.43 16 12 O -0.29 -0.44 5.44 -18.57 -0.10 -0.54 16 13 C 0.19 0.01 1.35 -27.89 -0.04 -0.03 16 14 H 0.05 -0.11 4.03 -51.93 -0.21 -0.31 16 15 C -0.56 -3.18 8.21 -34.44 -0.28 -3.46 16 16 H 0.08 0.56 7.81 -52.48 -0.41 0.15 16 17 C 0.09 0.72 5.24 -17.82 -0.09 0.63 16 18 N -0.86 -6.53 10.93 55.43 0.61 -5.92 16 19 Si 0.90 7.53 29.54 -169.99 -5.02 2.51 16 20 H -0.27 -2.34 7.11 56.52 0.40 -1.94 16 21 H -0.27 -2.40 7.11 56.52 0.40 -2.00 16 22 H -0.27 -2.76 7.11 56.52 0.40 -2.36 16 23 C 0.00 0.01 3.56 -3.82 -0.01 -0.01 16 24 N -0.27 2.71 0.05 -395.63 -0.02 2.69 16 25 C -0.04 0.38 7.19 60.07 0.43 0.81 16 26 C -0.04 0.51 8.00 60.06 0.48 0.99 16 27 C -0.05 0.53 7.53 60.07 0.45 0.99 16 28 C -0.10 -0.38 5.75 -106.68 -0.61 -0.99 16 29 C -0.11 -0.33 9.49 -39.41 -0.37 -0.70 16 30 H 0.06 -0.15 7.64 -51.92 -0.40 -0.54 16 31 H 0.06 -0.11 7.64 -51.93 -0.40 -0.51 16 32 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 33 H 0.14 -0.14 6.22 -52.48 -0.33 -0.47 16 34 H 0.14 0.21 8.06 -52.48 -0.42 -0.21 16 35 H 0.40 -0.49 9.06 45.56 0.41 -0.08 16 36 H 0.15 0.33 5.80 -52.48 -0.30 0.03 16 37 H 0.28 2.36 8.31 -40.82 -0.34 2.02 16 38 H 0.16 -0.28 6.08 -51.93 -0.32 -0.60 16 39 H 0.13 -0.72 8.09 -51.93 -0.42 -1.14 16 40 H 0.12 -0.89 7.97 -51.93 -0.41 -1.30 16 41 H 0.10 -1.15 8.03 -51.93 -0.42 -1.57 16 42 H 0.13 -0.73 4.96 -51.93 -0.26 -0.99 16 43 H 0.11 -1.53 8.12 -51.93 -0.42 -1.95 16 44 H 0.11 -1.59 8.09 -51.93 -0.42 -2.01 16 45 H 0.12 -1.42 8.14 -51.93 -0.42 -1.85 16 46 H 0.12 -1.04 5.90 -51.93 -0.31 -1.34 16 47 H 0.11 -1.47 8.14 -51.93 -0.42 -1.89 16 48 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 49 H 0.14 0.33 7.66 -52.49 -0.40 -0.07 16 LS Contribution 384.39 15.07 5.79 5.79 Total: 0.00 -18.92 384.39 -6.91 -25.82 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -6.25 Total: -23.51 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.34 Total: -1.16 kcal Atomic # 7 Polarization: -6.82 SS G_CDS: 0.47 Total: -6.35 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: -0.56 Total: -3.10 kcal Atomic # 14 Polarization: 7.53 SS G_CDS: -5.02 Total: 2.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -18.92 -6.91 -25.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226932821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.246 kcal (2) G-P(sol) polarization free energy of solvation -18.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds