Wall clock time and date at job start Wed Apr 1 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34074 * 116.99829 * 2 1 4 4 O 1.34079 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.41192 * 119.99726 * 179.97438 * 3 2 1 6 6 C 1.39891 * 125.04862 * 179.72036 * 5 3 2 7 7 C 1.39495 * 106.54325 * 179.89955 * 6 5 3 8 8 C 1.40613 * 135.04425 * 180.02562 * 7 6 5 9 9 C 1.35871 * 119.57447 * 180.29964 * 8 7 6 10 10 C 1.39910 * 121.50164 * 0.04741 * 9 8 7 11 11 O 1.35910 * 119.15426 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99478 * 3.86150 * 11 10 9 13 13 H 1.09000 * 109.47384 * 33.34906 * 12 11 10 14 14 C 1.50703 * 109.47027 * 273.34840 * 12 11 10 15 15 H 1.07990 * 120.00027 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 12 11 17 17 N 1.31522 * 120.00062 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99968 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46952 * 89.99993 * 18 16 14 20 20 H 1.48504 * 109.47107 * 209.99498 * 18 16 14 21 21 H 1.48496 * 109.46996 * 329.99862 * 18 16 14 22 22 C 1.52998 * 109.47040 * 153.34863 * 12 11 10 23 23 N 1.46901 * 109.47101 * 295.44011 * 22 12 11 24 24 C 1.46903 * 109.47076 * 66.01056 * 23 22 12 25 25 C 1.46906 * 109.47144 * 186.01042 * 23 22 12 26 26 C 1.46897 * 109.47036 * 306.00814 * 23 22 12 27 27 C 1.36349 * 121.69521 * 0.02562 * 10 9 8 28 28 C 1.40769 * 119.62092 * 359.97438 * 27 10 9 29 29 N 1.32780 * 134.23519 * 180.02562 * 28 27 10 30 30 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47327 * 60.00154 * 1 2 3 32 32 H 1.09001 * 109.47300 * 300.00259 * 1 2 3 33 33 H 0.96696 * 116.99967 * 179.97438 * 4 3 2 34 34 H 1.07995 * 126.73086 * 0.03581 * 6 5 3 35 35 H 1.07995 * 120.21461 * 0.34610 * 8 7 6 36 36 H 1.08005 * 119.24712 * 180.02562 * 9 8 7 37 37 H 0.96991 * 119.99908 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46998 * 55.43754 * 22 12 11 39 39 H 1.09000 * 109.47644 * 175.43886 * 22 12 11 40 40 H 1.08997 * 109.47343 * 51.35418 * 24 23 22 41 41 H 1.09005 * 109.46922 * 171.35014 * 24 23 22 42 42 H 1.08997 * 109.47076 * 291.35274 * 24 23 22 43 43 H 1.08995 * 109.46902 * 60.00056 * 25 23 22 44 44 H 1.09001 * 109.47018 * 179.97438 * 25 23 22 45 45 H 1.09000 * 109.46542 * 299.99798 * 25 23 22 46 46 H 1.09008 * 109.46804 * 69.02915 * 26 23 22 47 47 H 1.09001 * 109.47462 * 189.02209 * 26 23 22 48 48 H 1.08993 * 109.47371 * 309.02911 * 26 23 22 49 49 H 1.08004 * 120.18859 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0607 1.1946 0.0000 4 8 1.3305 2.3191 -0.0005 5 6 3.4707 1.2685 0.0005 6 6 4.2130 2.4542 -0.0050 7 6 5.5572 2.0813 0.0001 8 6 6.7816 2.7726 -0.0010 9 6 7.9465 2.0733 -0.0006 10 6 7.9594 0.6743 -0.0002 11 8 9.1523 0.0231 -0.0004 12 6 10.3304 0.8274 0.0847 13 1 10.1268 1.7065 0.6962 14 6 10.7429 1.2620 -1.2981 15 1 10.1632 0.9550 -2.1559 16 6 11.8605 2.0515 -1.4679 17 7 12.5662 2.4257 -0.4230 18 14 12.3722 2.5895 -3.1819 19 1 11.7157 3.8799 -3.5122 20 1 13.8469 2.7584 -3.2281 21 1 11.9609 1.5582 -4.1679 22 6 11.4587 0.0135 0.7214 23 7 11.1020 -0.3172 2.1075 24 6 9.9463 -1.2242 2.1126 25 6 12.2415 -0.9725 2.7634 26 6 10.7614 0.9141 2.8326 27 6 6.8059 -0.0527 -0.0006 28 6 5.5648 0.6116 -0.0009 29 7 4.2992 0.2099 -0.0010 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8140 3.1565 -0.0001 34 1 3.8221 3.4609 -0.0098 35 1 6.7960 3.8525 -0.0013 36 1 8.8840 2.6097 -0.0010 37 1 13.3521 2.9814 -0.5425 38 1 11.6075 -0.9060 0.1552 39 1 12.3784 0.5985 0.7126 40 1 10.1425 -2.0665 1.4492 41 1 9.7768 -1.5909 3.1250 42 1 9.0623 -0.6881 1.7675 43 1 13.0990 -0.2995 2.7596 44 1 11.9770 -1.2175 3.7920 45 1 12.4942 -1.8861 2.2253 46 1 9.8236 1.3148 2.4477 47 1 10.6531 0.6924 3.8943 48 1 11.5545 1.6487 2.6938 49 1 6.8442 -1.1321 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229561660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:58 Heat of formation + Delta-G solvation = 86.421624 kcal Electronic energy + Delta-G solvation = -31217.510990 eV Core-core repulsion = 27038.348810 eV Total energy + Delta-G solvation = -4179.162180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.20306 -42.29316 -41.02458 -39.62780 -39.04105 -36.12203 -34.76657 -32.31524 -31.37886 -30.67142 -30.19743 -30.09204 -29.03819 -28.42205 -27.61924 -25.76806 -24.90572 -23.45342 -23.02092 -21.42277 -20.90285 -19.99801 -19.07662 -18.99970 -18.40226 -18.07318 -18.04997 -17.76550 -17.61552 -16.63470 -16.22405 -16.09480 -15.87738 -15.55805 -15.36612 -15.15268 -14.81862 -14.58030 -14.33614 -14.31867 -14.18224 -13.98076 -13.88249 -13.79806 -13.68000 -13.63990 -13.49183 -13.16219 -13.01104 -12.88343 -12.77525 -12.35057 -12.16309 -11.97941 -11.67746 -11.36744 -11.20483 -10.73359 -10.08925 -10.01281 -9.98017 -8.44023 -7.87195 -7.71571 -5.89466 -1.20110 0.48560 0.76178 0.86903 1.50733 1.73256 2.15661 2.30487 2.31861 2.40181 2.51331 2.52578 2.64190 2.76574 3.07139 3.18057 3.33531 3.37845 3.50749 3.58269 3.60327 3.60823 3.70084 3.77985 3.82539 3.85820 3.90695 3.98588 4.11651 4.13586 4.22306 4.26001 4.32094 4.41608 4.45458 4.78270 4.85825 4.87127 4.96982 5.02752 5.11680 5.24601 5.32983 5.56147 5.86865 6.00096 6.11740 6.21426 6.23298 6.31571 6.40544 6.92349 7.34958 7.43871 7.88397 9.25560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.235 6.235 3 C 0.510 3.490 4 O -0.461 6.461 5 C -0.092 4.092 6 C -0.157 4.157 7 C -0.162 4.162 8 C -0.048 4.048 9 C -0.187 4.187 10 C 0.152 3.848 11 O -0.331 6.331 12 C 0.196 3.804 13 H 0.057 0.943 14 C -0.538 4.538 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.899 5.899 18 Si 0.911 3.089 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.008 4.008 23 N -0.269 5.269 24 C -0.047 4.047 25 C -0.041 4.041 26 C -0.040 4.040 27 C -0.160 4.160 28 C 0.133 3.867 29 N -0.475 5.475 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.452 0.548 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.280 0.720 38 H 0.111 0.889 39 H 0.165 0.835 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -4.337 13.060 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.140 6.140 3 C 0.400 3.600 4 O -0.270 6.270 5 C -0.211 4.211 6 C -0.186 4.186 7 C -0.165 4.165 8 C -0.067 4.067 9 C -0.205 4.205 10 C 0.103 3.897 11 O -0.246 6.246 12 C 0.141 3.859 13 H 0.074 0.926 14 C -0.575 4.575 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.737 3.263 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.126 4.126 23 N 0.073 4.927 24 C -0.189 4.189 25 C -0.183 4.183 26 C -0.182 4.182 27 C -0.181 4.181 28 C -0.016 4.016 29 N -0.191 5.191 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.317 0.683 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.182 0.818 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.154 0.846 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.124 0.876 48 H 0.143 0.857 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.001 -5.951 13.084 16.451 hybrid contribution 0.822 2.024 -1.038 2.419 sum -7.179 -3.927 12.046 14.563 Atomic orbital electron populations 1.23970 0.73455 1.06683 1.04206 1.86869 1.25504 1.21259 1.80353 1.21785 0.87148 0.78856 0.72256 1.83907 1.42294 1.17575 1.83187 1.17877 0.87510 0.93574 1.22119 1.21490 0.93174 0.95548 1.08398 1.20054 0.92665 0.95398 1.08349 1.20207 0.90468 0.98847 0.97179 1.21097 0.99582 0.93468 1.06373 1.18088 0.84785 0.90300 0.96492 1.85931 1.13105 1.37653 1.87915 1.20473 0.78209 0.88453 0.98751 0.92587 1.21428 1.12291 1.32030 0.91769 0.89988 1.24961 0.95157 0.93909 0.99059 1.69500 1.18317 1.35701 1.30058 0.86178 0.78233 0.79937 0.81924 1.19592 1.20378 1.19081 1.25073 1.07144 1.05343 0.75082 1.46291 1.14408 1.14594 1.17426 1.24384 0.90833 0.97220 1.06421 1.24001 0.90497 1.02439 1.01313 1.24036 1.08025 0.87126 0.98973 1.18846 0.87418 0.98970 1.12851 1.19815 0.90881 0.90454 1.00452 1.70141 1.00070 1.28382 1.20555 0.85940 0.89940 0.89980 0.68258 0.84962 0.86444 0.84038 0.90958 0.87051 0.81804 0.86829 0.88184 0.84588 0.86563 0.87341 0.86904 0.86605 0.87568 0.85746 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 10.54 101.05 1.06 1.01 16 2 O -0.23 0.18 10.45 -38.05 -0.40 -0.22 16 3 C 0.51 -0.56 7.96 31.85 0.25 -0.31 16 4 O -0.46 2.53 12.45 -38.07 -0.47 2.05 16 5 C -0.09 -0.29 6.72 -84.99 -0.57 -0.86 16 6 C -0.16 -0.38 10.28 -38.49 -0.40 -0.77 16 7 C -0.16 -0.89 6.38 -105.00 -0.67 -1.56 16 8 C -0.05 -0.22 10.07 -39.53 -0.40 -0.62 16 9 C -0.19 -0.91 8.63 -39.80 -0.34 -1.25 16 10 C 0.15 0.69 6.01 -39.64 -0.24 0.45 16 11 O -0.33 -0.92 6.65 -19.46 -0.13 -1.05 16 12 C 0.20 0.54 1.14 -27.88 -0.03 0.50 16 13 H 0.06 0.15 4.04 -51.93 -0.21 -0.06 16 14 C -0.54 -4.47 8.15 -34.44 -0.28 -4.75 16 15 H 0.08 0.90 7.81 -52.49 -0.41 0.49 16 16 C 0.07 0.68 5.29 -17.82 -0.09 0.58 16 17 N -0.90 -7.45 11.29 55.43 0.63 -6.83 16 18 Si 0.91 8.65 29.54 -169.99 -5.02 3.63 16 19 H -0.27 -2.86 7.11 56.52 0.40 -2.46 16 20 H -0.28 -2.79 7.11 56.52 0.40 -2.38 16 21 H -0.27 -2.76 7.11 56.52 0.40 -2.36 16 22 C -0.01 0.01 3.68 -3.82 -0.01 0.00 16 23 N -0.27 2.05 0.05 -395.62 -0.02 2.03 16 24 C -0.05 0.36 7.25 60.07 0.44 0.79 16 25 C -0.04 0.43 7.97 60.07 0.48 0.91 16 26 C -0.04 0.30 7.35 60.06 0.44 0.75 16 27 C -0.16 -0.91 9.98 -39.31 -0.39 -1.30 16 28 C 0.13 0.94 7.40 -82.96 -0.61 0.33 16 29 N -0.47 -3.38 11.18 -7.80 -0.09 -3.47 16 30 H 0.12 -0.81 8.14 -51.93 -0.42 -1.23 16 31 H 0.08 -0.51 8.14 -51.93 -0.42 -0.93 16 32 H 0.08 -0.53 8.14 -51.93 -0.42 -0.95 16 33 H 0.45 -4.30 7.44 45.56 0.34 -3.96 16 34 H 0.13 -0.30 7.20 -52.49 -0.38 -0.68 16 35 H 0.12 0.31 8.06 -52.49 -0.42 -0.11 16 36 H 0.14 0.74 5.55 -52.48 -0.29 0.45 16 37 H 0.28 2.49 8.31 -40.82 -0.34 2.15 16 38 H 0.11 -0.23 7.95 -51.93 -0.41 -0.64 16 39 H 0.16 0.00 5.89 -51.93 -0.31 -0.31 16 40 H 0.11 -0.86 7.93 -51.93 -0.41 -1.27 16 41 H 0.10 -1.03 8.02 -51.93 -0.42 -1.45 16 42 H 0.14 -0.63 4.89 -51.93 -0.25 -0.88 16 43 H 0.12 -1.19 8.10 -51.93 -0.42 -1.61 16 44 H 0.11 -1.36 8.01 -51.93 -0.42 -1.78 16 45 H 0.11 -1.23 8.14 -51.93 -0.42 -1.66 16 46 H 0.12 -0.66 6.29 -51.92 -0.33 -0.98 16 47 H 0.11 -1.13 8.01 -51.93 -0.42 -1.54 16 48 H 0.12 -0.82 8.06 -51.93 -0.42 -1.24 16 49 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 LS Contribution 389.90 15.07 5.88 5.88 Total: 0.00 -21.89 389.90 -7.42 -29.30 By element: Atomic # 1 Polarization: -18.81 SS G_CDS: -6.42 Total: -25.23 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.37 Total: -6.10 kcal Atomic # 7 Polarization: -8.78 SS G_CDS: 0.52 Total: -8.26 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: -1.00 Total: 0.78 kcal Atomic # 14 Polarization: 8.65 SS G_CDS: -5.02 Total: 3.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -21.89 -7.42 -29.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229561660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.727 kcal (2) G-P(sol) polarization free energy of solvation -21.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds