Wall clock time and date at job start Wed Apr 1 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34074 * 116.99829 * 2 1 4 4 O 1.34079 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.41192 * 119.99726 * 179.97438 * 3 2 1 6 6 C 1.39891 * 125.04862 * 179.72036 * 5 3 2 7 7 C 1.39495 * 106.54325 * 179.89955 * 6 5 3 8 8 C 1.40613 * 135.04425 * 180.02562 * 7 6 5 9 9 C 1.35871 * 119.57447 * 180.29964 * 8 7 6 10 10 C 1.39910 * 121.50164 * 0.04741 * 9 8 7 11 11 O 1.35910 * 119.15426 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99478 * 3.86150 * 11 10 9 13 13 H 1.09000 * 109.47384 * 33.34906 * 12 11 10 14 14 C 1.50703 * 109.47027 * 273.34840 * 12 11 10 15 15 H 1.07990 * 120.00027 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 12 11 17 17 N 1.31522 * 120.00062 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99968 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46952 * 89.99993 * 18 16 14 20 20 H 1.48504 * 109.47107 * 209.99498 * 18 16 14 21 21 H 1.48496 * 109.46996 * 329.99862 * 18 16 14 22 22 C 1.52998 * 109.47040 * 153.34863 * 12 11 10 23 23 N 1.46901 * 109.47101 * 295.44011 * 22 12 11 24 24 C 1.46903 * 109.47076 * 66.01056 * 23 22 12 25 25 C 1.46906 * 109.47144 * 186.01042 * 23 22 12 26 26 C 1.46897 * 109.47036 * 306.00814 * 23 22 12 27 27 C 1.36349 * 121.69521 * 0.02562 * 10 9 8 28 28 C 1.40769 * 119.62092 * 359.97438 * 27 10 9 29 29 N 1.32780 * 134.23519 * 180.02562 * 28 27 10 30 30 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47327 * 60.00154 * 1 2 3 32 32 H 1.09001 * 109.47300 * 300.00259 * 1 2 3 33 33 H 0.96696 * 116.99967 * 179.97438 * 4 3 2 34 34 H 1.07995 * 126.73086 * 0.03581 * 6 5 3 35 35 H 1.07995 * 120.21461 * 0.34610 * 8 7 6 36 36 H 1.08005 * 119.24712 * 180.02562 * 9 8 7 37 37 H 0.96991 * 119.99908 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46998 * 55.43754 * 22 12 11 39 39 H 1.09000 * 109.47644 * 175.43886 * 22 12 11 40 40 H 1.08997 * 109.47343 * 51.35418 * 24 23 22 41 41 H 1.09005 * 109.46922 * 171.35014 * 24 23 22 42 42 H 1.08997 * 109.47076 * 291.35274 * 24 23 22 43 43 H 1.08995 * 109.46902 * 60.00056 * 25 23 22 44 44 H 1.09001 * 109.47018 * 179.97438 * 25 23 22 45 45 H 1.09000 * 109.46542 * 299.99798 * 25 23 22 46 46 H 1.09008 * 109.46804 * 69.02915 * 26 23 22 47 47 H 1.09001 * 109.47462 * 189.02209 * 26 23 22 48 48 H 1.08993 * 109.47371 * 309.02911 * 26 23 22 49 49 H 1.08004 * 120.18859 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0607 1.1946 0.0000 4 8 1.3305 2.3191 -0.0005 5 6 3.4707 1.2685 0.0005 6 6 4.2130 2.4542 -0.0050 7 6 5.5572 2.0813 0.0001 8 6 6.7816 2.7726 -0.0010 9 6 7.9465 2.0733 -0.0006 10 6 7.9594 0.6743 -0.0002 11 8 9.1523 0.0231 -0.0004 12 6 10.3304 0.8274 0.0847 13 1 10.1268 1.7065 0.6962 14 6 10.7429 1.2620 -1.2981 15 1 10.1632 0.9550 -2.1559 16 6 11.8605 2.0515 -1.4679 17 7 12.5662 2.4257 -0.4230 18 14 12.3722 2.5895 -3.1819 19 1 11.7157 3.8799 -3.5122 20 1 13.8469 2.7584 -3.2281 21 1 11.9609 1.5582 -4.1679 22 6 11.4587 0.0135 0.7214 23 7 11.1020 -0.3172 2.1075 24 6 9.9463 -1.2242 2.1126 25 6 12.2415 -0.9725 2.7634 26 6 10.7614 0.9141 2.8326 27 6 6.8059 -0.0527 -0.0006 28 6 5.5648 0.6116 -0.0009 29 7 4.2992 0.2099 -0.0010 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8140 3.1565 -0.0001 34 1 3.8221 3.4609 -0.0098 35 1 6.7960 3.8525 -0.0013 36 1 8.8840 2.6097 -0.0010 37 1 13.3521 2.9814 -0.5425 38 1 11.6075 -0.9060 0.1552 39 1 12.3784 0.5985 0.7126 40 1 10.1425 -2.0665 1.4492 41 1 9.7768 -1.5909 3.1250 42 1 9.0623 -0.6881 1.7675 43 1 13.0990 -0.2995 2.7596 44 1 11.9770 -1.2175 3.7920 45 1 12.4942 -1.8861 2.2253 46 1 9.8236 1.3148 2.4477 47 1 10.6531 0.6924 3.8943 48 1 11.5545 1.6487 2.6938 49 1 6.8442 -1.1321 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229561660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:54 Heat of formation + Delta-G solvation = 76.121744 kcal Electronic energy + Delta-G solvation = -31217.957626 eV Core-core repulsion = 27038.348810 eV Total energy + Delta-G solvation = -4179.608816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.180 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.80790 -42.26950 -41.11900 -39.76382 -38.88303 -36.36222 -35.26957 -32.58701 -31.47413 -30.65026 -29.59302 -29.44055 -29.21473 -28.31087 -27.85762 -25.76324 -24.85032 -23.48446 -22.99080 -21.61463 -21.05559 -19.89041 -19.24979 -19.06084 -18.13536 -17.90251 -17.86578 -17.61419 -17.50971 -16.60348 -16.47620 -16.31155 -16.06602 -15.73201 -15.34157 -15.12024 -14.54282 -14.51765 -14.39146 -14.27324 -14.09382 -13.88150 -13.44962 -13.36602 -13.31100 -13.22967 -13.17802 -13.09295 -13.06478 -12.87995 -12.78331 -12.72118 -12.55257 -12.42622 -12.27706 -11.84646 -11.55220 -11.11679 -10.70594 -10.29326 -10.27379 -8.69423 -8.49957 -8.01416 -6.54413 -1.18062 0.62007 0.87746 1.01497 1.20494 1.33425 1.44976 1.49965 1.97467 2.24432 2.43285 2.45006 2.82397 3.05948 3.11289 3.14663 3.19499 3.24060 3.78072 3.97825 4.03793 4.10311 4.16679 4.18984 4.23284 4.24340 4.29772 4.31536 4.49106 4.51468 4.54075 4.61462 4.63453 4.66705 4.70449 4.75426 4.77436 4.79506 4.86663 4.93927 5.11954 5.16925 5.30027 5.56288 5.60294 5.69156 5.77450 5.78821 5.86727 6.10218 6.15885 6.43947 6.82130 7.20849 7.21593 8.54504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.253 6.253 3 C 0.561 3.439 4 O -0.428 6.428 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.206 4.206 8 C -0.044 4.044 9 C -0.210 4.210 10 C 0.153 3.847 11 O -0.324 6.324 12 C 0.198 3.802 13 H 0.058 0.942 14 C -0.547 4.547 15 H 0.045 0.955 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.927 3.073 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.013 3.987 23 N -0.256 5.256 24 C -0.048 4.048 25 C -0.043 4.043 26 C -0.043 4.043 27 C -0.179 4.179 28 C 0.091 3.909 29 N -0.521 5.521 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.473 0.527 34 H 0.181 0.819 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.276 0.724 38 H 0.115 0.885 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.148 0.852 48 H 0.114 0.886 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -4.331 15.493 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.157 6.157 3 C 0.445 3.555 4 O -0.238 6.238 5 C -0.240 4.240 6 C -0.169 4.169 7 C -0.209 4.209 8 C -0.063 4.063 9 C -0.228 4.228 10 C 0.104 3.896 11 O -0.238 6.238 12 C 0.143 3.857 13 H 0.075 0.925 14 C -0.585 4.585 15 H 0.064 0.936 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.755 3.245 19 H -0.214 1.214 20 H -0.206 1.206 21 H -0.209 1.209 22 C -0.108 4.108 23 N 0.086 4.914 24 C -0.189 4.189 25 C -0.183 4.183 26 C -0.184 4.184 27 C -0.199 4.199 28 C -0.055 4.055 29 N -0.239 5.239 30 H 0.153 0.847 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.343 0.657 34 H 0.198 0.802 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.169 0.831 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.160 0.840 45 H 0.139 0.861 46 H 0.110 0.890 47 H 0.166 0.834 48 H 0.133 0.867 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.524 -5.930 15.531 19.676 hybrid contribution 1.031 2.017 -1.802 2.894 sum -9.493 -3.913 13.729 17.144 Atomic orbital electron populations 1.24396 0.70599 1.08256 1.05839 1.86879 1.28359 1.21763 1.78737 1.21436 0.86005 0.80040 0.68066 1.83975 1.41609 1.17515 1.80706 1.18238 0.89112 0.93219 1.23447 1.21949 0.91766 0.97384 1.05763 1.20290 0.94192 0.94874 1.11577 1.20405 0.90381 0.99548 0.95916 1.20987 0.99338 0.93597 1.08902 1.18039 0.84990 0.90261 0.96261 1.85968 1.12748 1.37194 1.87911 1.20309 0.79259 0.89910 0.96240 0.92452 1.21472 1.11392 1.32112 0.93537 0.93629 1.24949 0.95923 0.94810 0.98631 1.69527 1.18212 1.36080 1.29058 0.86016 0.77613 0.78406 0.82432 1.21392 1.20584 1.20890 1.24249 1.03483 1.04525 0.78530 1.45937 1.15703 1.15132 1.14630 1.24384 0.89342 0.96431 1.08776 1.24233 0.89013 1.02291 1.02788 1.24109 1.06347 0.86920 1.01061 1.18878 0.87958 0.98728 1.14377 1.20059 0.91191 0.91813 1.02447 1.70014 1.00648 1.30556 1.22649 0.84696 0.88402 0.88122 0.65657 0.80181 0.84896 0.85202 0.91412 0.86713 0.83134 0.86742 0.84252 0.87790 0.86588 0.83953 0.86110 0.89022 0.83432 0.86727 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.54 113.37 1.19 1.19 16 2 O -0.25 0.85 10.45 -50.68 -0.53 0.32 16 3 C 0.56 -2.52 7.96 68.55 0.55 -1.98 16 4 O -0.43 6.52 12.45 -50.73 -0.63 5.88 16 5 C -0.12 -0.73 6.72 39.87 0.27 -0.47 16 6 C -0.14 -0.60 10.28 22.97 0.24 -0.37 16 7 C -0.21 -2.70 6.38 -20.11 -0.13 -2.83 16 8 C -0.04 -0.53 10.07 22.30 0.22 -0.30 16 9 C -0.21 -2.88 8.63 22.13 0.19 -2.68 16 10 C 0.15 2.04 6.01 22.23 0.13 2.17 16 11 O -0.32 -3.00 6.65 -92.54 -0.62 -3.62 16 12 C 0.20 1.69 1.14 29.85 0.03 1.73 16 13 H 0.06 0.50 4.04 -2.39 -0.01 0.49 16 14 C -0.55 -11.19 8.15 25.60 0.21 -10.98 16 15 H 0.05 1.24 7.81 -2.92 -0.02 1.21 16 16 C 0.06 1.29 5.29 84.65 0.45 1.74 16 17 N -0.89 -16.68 11.29 21.45 0.24 -16.44 16 18 Si 0.93 20.48 29.54 68.60 2.03 22.50 16 19 H -0.29 -7.02 7.11 99.48 0.71 -6.32 16 20 H -0.28 -6.19 7.11 99.48 0.71 -5.49 16 21 H -0.28 -6.92 7.11 99.48 0.71 -6.21 16 22 C 0.01 -0.03 3.68 86.30 0.32 0.28 16 23 N -0.26 3.90 0.05 ******* -0.07 3.84 16 24 C -0.05 0.72 7.25 127.69 0.93 1.65 16 25 C -0.04 0.98 7.97 127.69 1.02 1.99 16 26 C -0.04 0.64 7.35 127.69 0.94 1.58 16 27 C -0.18 -2.82 9.98 22.45 0.22 -2.60 16 28 C 0.09 1.60 7.40 41.91 0.31 1.91 16 29 N -0.52 -8.55 11.18 -178.58 -2.00 -10.54 16 30 H 0.13 -2.10 8.14 -2.39 -0.02 -2.12 16 31 H 0.10 -1.55 8.14 -2.38 -0.02 -1.57 16 32 H 0.10 -1.66 8.14 -2.39 -0.02 -1.68 16 33 H 0.47 -11.31 7.44 -74.06 -0.55 -11.86 16 34 H 0.18 -1.37 7.20 -2.91 -0.02 -1.39 16 35 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.13 1.94 5.55 -2.91 -0.02 1.92 16 37 H 0.28 5.38 8.31 -92.72 -0.77 4.61 16 38 H 0.11 -0.33 7.95 -2.39 -0.02 -0.35 16 39 H 0.15 0.20 5.89 -2.39 -0.01 0.18 16 40 H 0.11 -1.70 7.93 -2.39 -0.02 -1.72 16 41 H 0.14 -3.15 8.02 -2.38 -0.02 -3.17 16 42 H 0.10 -0.74 4.89 -2.39 -0.01 -0.75 16 43 H 0.12 -2.52 8.10 -2.39 -0.02 -2.54 16 44 H 0.14 -4.08 8.01 -2.39 -0.02 -4.10 16 45 H 0.12 -2.84 8.14 -2.39 -0.02 -2.86 16 46 H 0.09 -0.85 6.29 -2.38 -0.01 -0.87 16 47 H 0.15 -3.43 8.01 -2.39 -0.02 -3.45 16 48 H 0.11 -1.43 8.06 -2.39 -0.02 -1.45 16 49 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 Total: 0.00 -58.81 389.90 5.95 -52.86 By element: Atomic # 1 Polarization: -47.28 SS G_CDS: 0.43 Total: -46.85 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 7.09 Total: -7.96 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: -1.82 Total: -23.15 kcal Atomic # 8 Polarization: 4.36 SS G_CDS: -1.78 Total: 2.58 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: 2.03 Total: 22.50 kcal Total: -58.81 5.95 -52.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229561660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.986 kcal (2) G-P(sol) polarization free energy of solvation -58.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds