Wall clock time and date at job start Wed Apr 1 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46872 * 2 1 4 4 C 1.46501 * 119.99965 * 269.99952 * 3 2 1 5 5 C 1.50707 * 109.47062 * 270.00353 * 4 3 2 6 6 H 1.07997 * 119.99586 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99821 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99583 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00237 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46789 * 90.00029 * 9 7 5 11 11 H 1.48495 * 109.47182 * 209.99886 * 9 7 5 12 12 H 1.48501 * 109.47237 * 330.00279 * 9 7 5 13 13 C 1.34774 * 120.00392 * 90.00189 * 3 2 1 14 14 O 1.21281 * 120.00463 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99669 * 359.97438 * 13 3 2 16 16 N 1.46908 * 109.47034 * 180.02562 * 15 13 3 17 17 C 1.47480 * 110.99736 * 74.03257 * 16 15 13 18 18 C 1.53513 * 87.93030 * 138.70373 * 17 16 15 19 19 C 1.47475 * 110.99742 * 170.00332 * 16 15 13 20 20 H 1.08998 * 113.48374 * 336.12393 * 19 16 15 21 21 C 1.53006 * 113.47610 * 106.53424 * 19 16 15 22 22 N 1.46500 * 109.46998 * 304.99656 * 21 19 16 23 23 C 1.46503 * 119.99822 * 270.00192 * 22 21 19 24 24 C 1.34777 * 120.00124 * 89.99868 * 22 21 19 25 25 O 1.21275 * 119.99803 * 359.97438 * 24 22 21 26 26 C 1.50699 * 120.00130 * 180.02562 * 24 22 21 27 27 F 1.39897 * 109.47284 * 185.00028 * 26 24 22 28 28 F 1.39900 * 109.47054 * 305.00100 * 26 24 22 29 29 H 1.09004 * 109.47365 * 299.99718 * 1 2 3 30 30 H 1.08994 * 109.47303 * 60.00248 * 1 2 3 31 31 H 1.09001 * 109.47138 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47061 * 239.99833 * 2 1 3 33 33 H 1.08999 * 109.46896 * 120.00012 * 2 1 3 34 34 H 1.09001 * 109.47270 * 29.99705 * 4 3 2 35 35 H 1.08994 * 109.47530 * 150.00208 * 4 3 2 36 36 H 0.97002 * 119.99769 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46640 * 60.00756 * 15 13 3 38 38 H 1.08997 * 109.47546 * 300.00153 * 15 13 3 39 39 H 1.08998 * 113.47307 * 253.46963 * 17 16 15 40 40 H 1.09000 * 113.47754 * 23.87791 * 17 16 15 41 41 H 1.09002 * 114.16828 * 220.32675 * 18 17 16 42 42 H 1.08998 * 114.17120 * 87.62218 * 18 17 16 43 43 H 1.08993 * 109.46955 * 64.99881 * 21 19 16 44 44 H 1.09000 * 109.47050 * 184.99710 * 21 19 16 45 45 H 1.09007 * 109.47177 * 89.99828 * 23 22 21 46 46 H 1.09002 * 109.47019 * 209.99587 * 23 22 21 47 47 H 1.09001 * 109.47429 * 329.99755 * 23 22 21 48 48 H 1.09003 * 109.46861 * 64.99817 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 5.3916 2.1842 -3.2569 9 14 3.0131 3.4359 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4067 3.3137 -5.3553 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9913 1.3064 2.4722 16 7 2.3091 2.2066 3.5888 17 6 1.2713 3.2430 3.7438 18 6 1.3792 3.0451 5.2623 19 6 1.8542 1.6386 4.8715 20 1 1.0423 0.9192 4.7644 21 6 2.9960 1.1160 5.7458 22 7 3.7886 0.1464 4.9857 23 6 3.4375 -1.2755 5.0217 24 6 4.8408 0.5624 4.2533 25 8 5.1311 1.7395 4.2232 26 6 5.6558 -0.4350 3.4710 27 9 6.7511 0.2119 2.8890 28 9 6.1108 -1.4414 4.3297 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7176 2.5746 -4.0828 37 1 2.6213 0.4187 2.5301 38 1 0.9433 1.0125 2.5299 39 1 1.5908 4.2305 3.4108 40 1 0.3035 2.9530 3.3348 41 1 0.4223 3.0642 5.7839 42 1 2.1441 3.6581 5.7390 43 1 3.6320 1.9479 6.0482 44 1 2.5835 0.6333 6.6318 45 1 2.7335 -1.4964 4.2193 46 1 4.3380 -1.8755 4.8904 47 1 2.9797 -1.5126 5.9821 48 1 5.0372 -0.8764 2.6896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230576899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:57 Heat of formation + Delta-G solvation = -104.655171 kcal Electronic energy + Delta-G solvation = -33379.056936 eV Core-core repulsion = 28721.442437 eV Total energy + Delta-G solvation = -4657.614499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.24883 -47.22378 -40.82934 -39.38619 -38.53838 -35.71833 -35.32318 -32.76241 -31.38567 -30.33923 -29.82159 -27.94122 -27.79582 -26.34096 -25.04075 -23.39442 -23.03273 -21.96584 -20.30196 -19.74239 -18.43876 -18.24392 -17.75004 -17.37691 -16.91170 -16.61964 -16.37085 -16.08464 -15.88245 -15.15036 -14.89921 -14.83303 -14.35304 -14.02973 -13.93275 -13.87478 -13.73382 -13.54284 -13.30376 -13.13372 -13.06543 -12.76718 -12.48085 -12.37908 -12.33327 -12.13353 -11.92005 -11.89423 -11.79892 -11.58030 -11.35927 -11.14050 -10.94700 -10.78423 -10.64066 -10.48329 -10.13710 -9.84061 -9.51086 -9.19104 -8.83507 -8.60980 -8.55211 -7.70975 -6.04688 -4.03362 2.23162 2.39918 3.30544 3.34189 3.36461 3.38693 3.55065 3.65491 3.90281 4.08153 4.34751 4.42360 4.53480 4.58471 4.62162 4.76593 4.87965 4.90655 5.03443 5.08501 5.11349 5.18614 5.23149 5.27814 5.31540 5.35743 5.43643 5.48860 5.59109 5.62042 5.66511 5.85638 5.90013 6.04943 6.07603 6.17823 6.30401 6.39050 6.68936 6.90860 6.95787 7.06241 7.37153 7.64428 7.83562 8.26111 8.50648 8.97351 9.03978 9.55340 11.08774 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004144 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.087477 B = 6755.480952 C = 7950.248237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.219 3.781 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.508 3.492 14 O -0.515 6.515 15 C 0.006 3.994 16 N -0.425 5.425 17 C 0.007 3.993 18 C -0.135 4.135 19 C 0.003 3.997 20 H 0.077 0.923 21 C 0.137 3.863 22 N -0.606 5.606 23 C 0.054 3.946 24 C 0.473 3.527 25 O -0.459 6.459 26 C 0.256 3.744 27 F -0.169 7.169 28 F -0.191 7.191 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 -10.630 19.820 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.390 6.390 15 C -0.125 4.125 16 N -0.148 5.148 17 C -0.122 4.122 18 C -0.173 4.173 19 C -0.108 4.108 20 H 0.095 0.905 21 C 0.014 3.986 22 N -0.342 5.342 23 C -0.089 4.089 24 C 0.254 3.746 25 O -0.328 6.328 26 C 0.199 3.801 27 F -0.150 7.150 28 F -0.172 7.172 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.294 -9.140 19.495 23.865 hybrid contribution -1.292 -0.182 -0.853 1.559 sum -11.586 -9.323 18.642 23.847 Atomic orbital electron populations 1.22232 0.96851 1.01495 1.02132 1.21397 0.93321 0.84161 1.02780 1.47953 1.64779 1.13266 1.07041 1.19612 0.97312 0.93283 0.79947 1.21310 0.95279 1.32960 1.07031 0.90833 1.24851 0.94954 0.95764 0.97380 1.69902 1.15062 1.44952 1.23516 0.86865 0.81378 0.81728 0.79764 1.19924 1.21089 1.19195 1.20049 0.78869 0.87229 0.84542 1.90696 1.43721 1.17814 1.86722 1.22647 1.00015 0.97241 0.92635 1.69009 1.40031 1.06744 0.98965 1.23640 0.94095 0.99551 0.94892 1.23171 1.01704 0.95456 0.96956 1.23944 0.96524 0.96894 0.93478 0.90513 1.21545 0.91983 0.92663 0.92408 1.47609 1.29749 1.08342 1.48522 1.22244 1.02828 0.80775 1.03025 1.20866 0.82297 0.89987 0.81423 1.90885 1.67087 1.16189 1.58647 1.21674 0.85391 0.83005 0.90052 1.93105 1.55668 1.82056 1.84126 1.92926 1.90402 1.61540 1.72372 0.93316 0.92094 0.91989 0.89624 0.92039 0.95411 0.94760 0.92591 0.89478 0.92163 0.88869 0.91957 0.90634 0.88517 0.88938 0.89855 0.92465 0.89327 0.90366 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.22 5.41 4.23 -5.19 -0.02 5.39 16 5 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 6 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 10 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.51 10.52 7.51 -10.99 -0.08 10.44 16 14 O -0.52 -13.23 15.34 5.56 0.09 -13.14 16 15 C 0.01 0.10 3.87 -4.97 -0.02 0.08 16 16 N -0.43 -6.29 4.66 -237.94 -1.11 -7.39 16 17 C 0.01 0.09 6.71 -7.55 -0.05 0.04 16 18 C -0.13 -1.27 8.00 -26.20 -0.21 -1.48 16 19 C 0.00 0.03 3.37 -71.43 -0.24 -0.22 16 20 H 0.08 0.61 7.77 -51.93 -0.40 0.21 16 21 C 0.14 1.25 5.63 -4.04 -0.02 1.23 16 22 N -0.61 -6.13 2.74 -181.56 -0.50 -6.63 16 23 C 0.05 0.33 10.28 59.85 0.62 0.95 16 24 C 0.47 6.79 6.63 -10.99 -0.07 6.71 16 25 O -0.46 -8.85 15.63 5.56 0.09 -8.76 16 26 C 0.26 3.35 4.90 36.01 0.18 3.53 16 27 F -0.17 -2.95 16.95 2.25 0.04 -2.91 16 28 F -0.19 -2.15 14.88 2.25 0.03 -2.12 16 29 H 0.05 0.54 7.22 -51.93 -0.37 0.17 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.09 1.19 6.94 -51.93 -0.36 0.83 16 38 H 0.06 0.73 6.60 -51.93 -0.34 0.39 16 39 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 40 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 43 H 0.09 1.04 7.15 -51.93 -0.37 0.67 16 44 H 0.08 0.48 7.89 -51.93 -0.41 0.07 16 45 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 46 H 0.09 0.55 5.09 -51.93 -0.26 0.29 16 47 H 0.08 0.31 7.89 -51.93 -0.41 -0.10 16 48 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -39.31 393.44 -7.13 -46.43 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.35 Total: -1.62 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -0.01 Total: 12.94 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.26 Total: -54.07 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.90 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.31 -7.13 -46.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230576899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.221 kcal (2) G-P(sol) polarization free energy of solvation -39.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds