Wall clock time and date at job start Wed Apr 1 2020 04:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46872 * 2 1 4 4 C 1.46501 * 119.99965 * 269.99952 * 3 2 1 5 5 C 1.50707 * 109.47062 * 270.00353 * 4 3 2 6 6 H 1.07997 * 119.99586 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99821 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99583 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00237 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46789 * 90.00029 * 9 7 5 11 11 H 1.48495 * 109.47182 * 209.99886 * 9 7 5 12 12 H 1.48501 * 109.47237 * 330.00279 * 9 7 5 13 13 C 1.34774 * 120.00392 * 90.00189 * 3 2 1 14 14 O 1.21281 * 120.00463 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99669 * 359.97438 * 13 3 2 16 16 N 1.46908 * 109.47034 * 180.02562 * 15 13 3 17 17 C 1.47480 * 110.99736 * 74.03257 * 16 15 13 18 18 C 1.53513 * 87.93030 * 138.70373 * 17 16 15 19 19 C 1.47475 * 110.99742 * 170.00332 * 16 15 13 20 20 H 1.08998 * 113.48374 * 336.12393 * 19 16 15 21 21 C 1.53006 * 113.47610 * 106.53424 * 19 16 15 22 22 N 1.46500 * 109.46998 * 304.99656 * 21 19 16 23 23 C 1.46503 * 119.99822 * 270.00192 * 22 21 19 24 24 C 1.34777 * 120.00124 * 89.99868 * 22 21 19 25 25 O 1.21275 * 119.99803 * 359.97438 * 24 22 21 26 26 C 1.50699 * 120.00130 * 180.02562 * 24 22 21 27 27 F 1.39897 * 109.47284 * 185.00028 * 26 24 22 28 28 F 1.39900 * 109.47054 * 305.00100 * 26 24 22 29 29 H 1.09004 * 109.47365 * 299.99718 * 1 2 3 30 30 H 1.08994 * 109.47303 * 60.00248 * 1 2 3 31 31 H 1.09001 * 109.47138 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47061 * 239.99833 * 2 1 3 33 33 H 1.08999 * 109.46896 * 120.00012 * 2 1 3 34 34 H 1.09001 * 109.47270 * 29.99705 * 4 3 2 35 35 H 1.08994 * 109.47530 * 150.00208 * 4 3 2 36 36 H 0.97002 * 119.99769 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46640 * 60.00756 * 15 13 3 38 38 H 1.08997 * 109.47546 * 300.00153 * 15 13 3 39 39 H 1.08998 * 113.47307 * 253.46963 * 17 16 15 40 40 H 1.09000 * 113.47754 * 23.87791 * 17 16 15 41 41 H 1.09002 * 114.16828 * 220.32675 * 18 17 16 42 42 H 1.08998 * 114.17120 * 87.62218 * 18 17 16 43 43 H 1.08993 * 109.46955 * 64.99881 * 21 19 16 44 44 H 1.09000 * 109.47050 * 184.99710 * 21 19 16 45 45 H 1.09007 * 109.47177 * 89.99828 * 23 22 21 46 46 H 1.09002 * 109.47019 * 209.99587 * 23 22 21 47 47 H 1.09001 * 109.47429 * 329.99755 * 23 22 21 48 48 H 1.09003 * 109.46861 * 64.99817 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 5.3916 2.1842 -3.2569 9 14 3.0131 3.4359 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4067 3.3137 -5.3553 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9913 1.3064 2.4722 16 7 2.3091 2.2066 3.5888 17 6 1.2713 3.2430 3.7438 18 6 1.3792 3.0451 5.2623 19 6 1.8542 1.6386 4.8715 20 1 1.0423 0.9192 4.7644 21 6 2.9960 1.1160 5.7458 22 7 3.7886 0.1464 4.9857 23 6 3.4375 -1.2755 5.0217 24 6 4.8408 0.5624 4.2533 25 8 5.1311 1.7395 4.2232 26 6 5.6558 -0.4350 3.4710 27 9 6.7511 0.2119 2.8890 28 9 6.1108 -1.4414 4.3297 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7176 2.5746 -4.0828 37 1 2.6213 0.4187 2.5301 38 1 0.9433 1.0125 2.5299 39 1 1.5908 4.2305 3.4108 40 1 0.3035 2.9530 3.3348 41 1 0.4223 3.0642 5.7839 42 1 2.1441 3.6581 5.7390 43 1 3.6320 1.9479 6.0482 44 1 2.5835 0.6333 6.6318 45 1 2.7335 -1.4964 4.2193 46 1 4.3380 -1.8755 4.8904 47 1 2.9797 -1.5126 5.9821 48 1 5.0372 -0.8764 2.6896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230576899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:50 Heat of formation + Delta-G solvation = -135.418016 kcal Electronic energy + Delta-G solvation = -33380.390913 eV Core-core repulsion = 28721.442437 eV Total energy + Delta-G solvation = -4658.948476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -50.32678 -48.35891 -41.83814 -40.61566 -39.84705 -36.98323 -36.60185 -34.90164 -32.64258 -31.71012 -30.75661 -29.55537 -28.74922 -27.09770 -26.39658 -24.40985 -24.27335 -23.66770 -21.26487 -20.57339 -19.92727 -19.24470 -19.13198 -18.78241 -18.39960 -18.00665 -17.55842 -17.08106 -16.98475 -16.55694 -16.29401 -15.94553 -15.71526 -15.29063 -15.12909 -15.05969 -14.80830 -14.73535 -14.60418 -14.22370 -14.17221 -14.02882 -13.89259 -13.69428 -13.37136 -13.22804 -13.20131 -13.01236 -12.95326 -12.65573 -12.55486 -12.45855 -12.27332 -12.12936 -12.03006 -11.81829 -11.76425 -11.53856 -10.92275 -10.85625 -10.62738 -9.90876 -9.52251 -9.39875 -8.35823 -6.40793 1.17642 1.27742 1.33437 1.40990 1.50714 1.79965 2.22080 2.28171 2.69066 2.93164 2.98376 3.10294 3.46749 3.47308 3.63800 3.67455 3.85902 4.01426 4.13552 4.19539 4.23711 4.26273 4.34339 4.40072 4.42079 4.53099 4.60128 4.71381 4.76019 4.82571 4.89139 4.93339 4.98226 4.98499 4.99273 4.99805 5.23293 5.34434 5.36821 5.45306 5.54686 5.64519 6.01959 6.16298 6.23798 6.60455 6.72781 6.87144 7.20340 7.47019 8.81442 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004144 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.087477 B = 6755.480952 C = 7950.248237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.229 3.771 5 C -0.534 4.534 6 H 0.025 0.975 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.272 1.272 12 H -0.236 1.236 13 C 0.494 3.506 14 O -0.581 6.581 15 C 0.024 3.976 16 N -0.473 5.473 17 C -0.001 4.001 18 C -0.116 4.116 19 C 0.015 3.985 20 H 0.115 0.885 21 C 0.132 3.868 22 N -0.591 5.591 23 C 0.045 3.955 24 C 0.465 3.535 25 O -0.526 6.526 26 C 0.252 3.748 27 F -0.202 7.202 28 F -0.179 7.179 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.010 0.990 36 H 0.268 0.732 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.861 -13.451 21.589 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.207 1.207 11 H -0.197 1.197 12 H -0.159 1.159 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.107 4.107 16 N -0.196 5.196 17 C -0.130 4.130 18 C -0.154 4.154 19 C -0.095 4.095 20 H 0.133 0.867 21 C 0.010 3.990 22 N -0.325 5.325 23 C -0.096 4.096 24 C 0.248 3.752 25 O -0.401 6.401 26 C 0.195 3.805 27 F -0.183 7.183 28 F -0.160 7.160 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.130 0.870 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.637 -12.078 21.308 28.534 hybrid contribution 0.100 0.597 -1.304 1.438 sum -14.537 -11.481 20.005 27.264 Atomic orbital electron populations 1.22147 0.93728 1.03789 1.01948 1.21785 0.95787 0.80999 1.03858 1.48097 1.64578 1.15318 1.05615 1.19220 0.94685 0.92704 0.82760 1.21554 0.97104 1.32087 1.06516 0.95644 1.25870 0.96717 0.97162 0.99055 1.70064 1.17425 1.46589 1.24469 0.85717 0.80535 0.78797 0.77865 1.20691 1.19696 1.15907 1.21244 0.77238 0.86799 0.86450 1.90661 1.46562 1.20927 1.87823 1.22551 1.02406 0.96540 0.89219 1.69019 1.41648 1.08076 1.00835 1.23662 0.94184 0.97306 0.97854 1.23076 1.03070 0.94963 0.94268 1.24049 0.97349 0.97597 0.90511 0.86694 1.21753 0.91256 0.92280 0.93722 1.47737 1.27956 1.10397 1.46375 1.22587 1.03451 0.77745 1.05805 1.21139 0.83268 0.89195 0.81640 1.90862 1.69207 1.18700 1.61330 1.21966 0.84588 0.83070 0.90838 1.93030 1.57521 1.82937 1.84815 1.92946 1.90340 1.60680 1.72062 0.92091 0.93738 0.88346 0.90955 0.88704 0.93274 0.97155 0.92314 0.88201 0.88183 0.93443 0.90377 0.86851 0.90010 0.92017 0.84941 0.90297 0.89662 0.87029 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.10 2.67 5.93 86.38 0.51 3.18 16 3 N -0.60 -24.57 2.46 -826.15 -2.03 -26.60 16 4 C 0.23 11.50 4.23 85.63 0.36 11.87 16 5 C -0.53 -32.62 9.94 25.60 0.25 -32.37 16 6 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 7 C 0.01 0.60 5.47 84.65 0.46 1.07 16 8 N -0.95 -62.01 13.96 21.45 0.30 -61.71 16 9 Si 0.95 46.17 27.47 68.60 1.88 48.05 16 10 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 13 C 0.49 20.71 7.51 87.66 0.66 21.37 16 14 O -0.58 -31.56 15.34 -3.03 -0.05 -31.61 16 15 C 0.02 0.66 3.87 85.56 0.33 0.99 16 16 N -0.47 -13.51 4.66 -906.72 -4.23 -17.73 16 17 C 0.00 -0.03 6.71 83.57 0.56 0.53 16 18 C -0.12 -1.91 8.00 30.94 0.25 -1.66 16 19 C 0.01 0.23 3.37 42.19 0.14 0.38 16 20 H 0.12 1.02 7.77 -2.39 -0.02 1.00 16 21 C 0.13 1.99 5.63 86.38 0.49 2.48 16 22 N -0.59 -10.31 2.74 -846.74 -2.32 -12.63 16 23 C 0.04 0.33 10.28 127.77 1.31 1.64 16 24 C 0.47 13.35 6.63 87.66 0.58 13.93 16 25 O -0.53 -21.54 15.63 -3.02 -0.05 -21.59 16 26 C 0.25 6.61 4.90 71.24 0.35 6.96 16 27 F -0.20 -7.51 16.95 44.97 0.76 -6.75 16 28 F -0.18 -3.85 14.88 44.97 0.67 -3.18 16 29 H 0.06 1.06 7.22 -2.38 -0.02 1.04 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.09 1.93 6.44 -2.39 -0.02 1.92 16 34 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 35 H 0.01 0.57 6.85 -2.39 -0.02 0.55 16 36 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 37 H 0.10 2.43 6.94 -2.39 -0.02 2.41 16 38 H 0.10 1.90 6.60 -2.39 -0.02 1.89 16 39 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.08 1.71 7.70 -2.39 -0.02 1.69 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.60 7.94 -2.39 -0.02 1.58 16 43 H 0.06 1.36 7.15 -2.39 -0.02 1.34 16 44 H 0.13 0.74 7.89 -2.39 -0.02 0.72 16 45 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 46 H 0.08 0.74 5.09 -2.39 -0.01 0.72 16 47 H 0.11 0.16 7.89 -2.39 -0.02 0.14 16 48 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -98.32 393.44 2.86 -95.46 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.91 Total: 10.26 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 7.00 Total: 28.02 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -8.28 Total: -118.67 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.09 Total: -53.20 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 1.43 Total: -9.93 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Total: -98.32 2.86 -95.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230576899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.954 kcal (2) G-P(sol) polarization free energy of solvation -98.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds