Wall clock time and date at job start Wed Apr 1 2020 04:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47038 * 2 1 4 4 C 1.46500 * 119.99670 * 270.00012 * 3 2 1 5 5 C 1.50695 * 109.47035 * 269.99808 * 4 3 2 6 6 H 1.07995 * 120.00441 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00080 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99861 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99933 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47011 * 89.99921 * 9 7 5 11 11 H 1.48496 * 109.47130 * 210.00077 * 9 7 5 12 12 H 1.48495 * 109.46944 * 329.99926 * 9 7 5 13 13 C 1.34776 * 120.00229 * 89.99565 * 3 2 1 14 14 O 1.21276 * 119.99793 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99902 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47156 * 179.97438 * 15 13 3 17 17 C 1.48188 * 111.07549 * 269.29033 * 16 15 13 18 18 C 1.53940 * 86.22320 * 222.53623 * 17 16 15 19 19 C 1.47957 * 110.99994 * 169.99763 * 16 15 13 20 20 H 1.09002 * 113.76222 * 23.15684 * 19 16 15 21 21 C 1.52996 * 113.76271 * 251.90165 * 19 16 15 22 22 N 1.46502 * 109.47041 * 56.98076 * 21 19 16 23 23 C 1.46499 * 120.00062 * 90.00341 * 22 21 19 24 24 C 1.34779 * 119.99726 * 270.00095 * 22 21 19 25 25 O 1.21279 * 120.00410 * 359.97438 * 24 22 21 26 26 C 1.50703 * 119.99541 * 179.97438 * 24 22 21 27 27 F 1.39896 * 109.47150 * 55.00603 * 26 24 22 28 28 F 1.39899 * 109.46789 * 175.00012 * 26 24 22 29 29 H 1.09007 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47252 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.47182 * 60.00374 * 1 2 3 32 32 H 1.08998 * 109.47252 * 240.00047 * 2 1 3 33 33 H 1.09000 * 109.47182 * 119.99625 * 2 1 3 34 34 H 1.09002 * 109.47148 * 29.99883 * 4 3 2 35 35 H 1.09003 * 109.46642 * 150.00028 * 4 3 2 36 36 H 0.97004 * 119.99373 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.46969 * 59.99636 * 15 13 3 38 38 H 1.09005 * 109.47106 * 300.00020 * 15 13 3 39 39 H 1.08998 * 113.82204 * 108.18971 * 17 16 15 40 40 H 1.08992 * 113.75851 * 336.87123 * 17 16 15 41 41 H 1.09001 * 113.73242 * 269.26957 * 18 17 16 42 42 H 1.08998 * 113.82562 * 137.99951 * 18 17 16 43 43 H 1.09002 * 109.47038 * 296.97986 * 21 19 16 44 44 H 1.09006 * 109.47661 * 176.98205 * 21 19 16 45 45 H 1.09002 * 109.47391 * 89.99876 * 23 22 21 46 46 H 1.09001 * 109.46813 * 329.99933 * 23 22 21 47 47 H 1.09004 * 109.47041 * 210.00060 * 23 22 21 48 48 H 1.08995 * 109.47127 * 294.99846 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 5.3916 2.1842 -3.2568 9 14 3.0130 3.4359 -3.9289 10 1 3.1155 4.8560 -3.5070 11 1 3.4066 3.3135 -5.3555 12 1 1.6135 2.9691 -3.7598 13 6 2.2429 2.0167 1.1672 14 8 2.6467 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7256 2.0593 4.0044 18 6 3.2004 2.1156 5.4504 19 6 1.8552 1.6359 4.8759 20 1 1.7456 0.5515 4.8616 21 6 0.6406 2.3506 5.4713 22 7 -0.4610 2.3282 4.5058 23 6 -1.4182 1.2191 4.5122 24 6 -0.5939 3.3279 3.6117 25 8 0.1982 4.2463 3.6067 26 6 -1.7268 3.3045 2.6182 27 9 -2.9424 3.1837 3.2998 28 9 -1.7229 4.4920 1.8786 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 5.7176 2.5747 -4.0828 37 1 2.6227 0.4189 2.5298 38 1 0.9443 1.0115 2.5302 39 1 4.3545 2.9069 3.7323 40 1 4.1654 1.0994 3.7341 41 1 3.1659 3.1229 5.8656 42 1 3.6735 1.3964 6.1190 43 1 0.9028 3.3838 5.6995 44 1 0.3327 1.8435 6.3858 45 1 -2.2477 1.4589 5.1774 46 1 -0.9224 0.3134 4.8615 47 1 -1.7965 1.0599 3.5024 48 1 -1.6019 2.4567 1.9447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230576900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:04 Heat of formation + Delta-G solvation = -109.250163 kcal Electronic energy + Delta-G solvation = -33562.756287 eV Core-core repulsion = 28904.942534 eV Total energy + Delta-G solvation = -4657.813752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.29494 -47.29403 -40.65492 -39.35575 -38.49151 -35.77187 -35.27363 -32.76419 -31.33949 -30.33344 -29.89563 -27.95453 -27.76755 -26.50051 -24.96260 -23.52161 -23.02605 -21.93352 -20.31926 -19.65892 -18.44302 -18.31826 -17.83471 -17.45274 -16.90890 -16.54972 -16.36880 -16.14428 -15.79284 -15.15880 -14.98953 -14.81072 -14.35947 -14.13280 -14.04092 -13.66834 -13.56230 -13.50561 -13.35974 -13.25790 -13.18387 -12.92981 -12.75017 -12.44050 -12.23037 -12.17224 -12.07637 -11.93477 -11.67949 -11.44695 -11.38807 -11.04166 -10.96260 -10.87814 -10.66736 -10.46092 -10.12228 -9.90000 -9.51517 -9.21699 -8.85639 -8.55921 -8.46700 -7.66946 -6.06417 -4.04659 2.18681 2.33200 3.31824 3.37602 3.41097 3.42283 3.45339 3.59658 3.80140 4.08543 4.38653 4.41594 4.42749 4.47511 4.56738 4.66629 4.82310 4.93866 5.03785 5.06710 5.07964 5.15382 5.23148 5.28046 5.28373 5.37468 5.38140 5.47329 5.59801 5.61612 5.65288 5.83541 5.89409 6.05378 6.07946 6.15816 6.28891 6.41269 6.71449 6.86833 6.97116 7.07142 7.41223 7.64795 7.78567 8.31409 8.50269 8.95906 9.10925 9.54723 11.07040 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.004077 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.027148 B = 6866.360018 C = 7925.704046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.507 6.507 15 C 0.005 3.995 16 N -0.434 5.434 17 C 0.008 3.992 18 C -0.133 4.133 19 C 0.005 3.995 20 H 0.078 0.922 21 C 0.139 3.861 22 N -0.607 5.607 23 C 0.073 3.927 24 C 0.471 3.529 25 O -0.455 6.455 26 C 0.255 3.745 27 F -0.192 7.192 28 F -0.172 7.172 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 -8.631 19.631 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.291 3.709 14 O -0.381 6.381 15 C -0.127 4.127 16 N -0.156 5.156 17 C -0.121 4.121 18 C -0.171 4.171 19 C -0.106 4.106 20 H 0.096 0.904 21 C 0.017 3.983 22 N -0.343 5.343 23 C -0.070 4.070 24 C 0.252 3.748 25 O -0.323 6.323 26 C 0.198 3.802 27 F -0.174 7.174 28 F -0.153 7.153 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.829 -6.757 19.213 25.194 hybrid contribution -0.372 -0.638 -0.750 1.053 sum -15.201 -7.396 18.463 25.033 Atomic orbital electron populations 1.22247 0.97141 1.01493 1.01815 1.21389 0.93130 0.84301 1.02892 1.47970 1.65201 1.13160 1.07052 1.19605 0.97175 0.93419 0.80027 1.21316 0.95378 1.32761 1.07026 0.90941 1.24850 0.94980 0.95756 0.97380 1.69901 1.15132 1.45111 1.23591 0.86860 0.81450 0.81786 0.79667 1.19828 1.21109 1.19103 1.20085 0.79182 0.87188 0.84441 1.90714 1.43350 1.17394 1.86607 1.22655 1.01730 0.95265 0.93089 1.68542 1.06762 1.41016 0.99289 1.23927 0.92063 1.02172 0.93894 1.23316 0.94379 1.02535 0.96867 1.23971 0.95656 0.97885 0.93109 0.90419 1.21483 0.84236 1.02834 0.89793 1.47616 1.29263 1.22919 1.34526 1.21945 0.92819 0.89457 1.02796 1.20822 0.87016 0.84040 0.82874 1.90903 1.40952 1.33212 1.67240 1.21633 0.80921 0.87752 0.89895 1.93019 1.46752 1.96280 1.81311 1.93083 1.96252 1.49228 1.76750 0.91869 0.93816 0.91976 0.89679 0.91892 0.95455 0.94632 0.92613 0.91758 0.89736 0.88714 0.91418 0.88805 0.90890 0.88864 0.89708 0.91606 0.90485 0.91434 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.30 2.46 -175.06 -0.43 -12.73 16 4 C 0.22 5.44 4.23 -5.20 -0.02 5.42 16 5 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 9 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 10 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.51 10.55 7.72 -10.99 -0.08 10.47 16 14 O -0.51 -13.29 16.01 5.56 0.09 -13.20 16 15 C 0.00 0.07 3.83 -4.98 -0.02 0.05 16 16 N -0.43 -6.32 4.37 -231.13 -1.01 -7.33 16 17 C 0.01 0.11 7.96 -2.64 -0.02 0.09 16 18 C -0.13 -1.25 7.84 -25.78 -0.20 -1.45 16 19 C 0.00 0.04 3.55 -66.66 -0.24 -0.19 16 20 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 21 C 0.14 1.22 5.59 -4.04 -0.02 1.20 16 22 N -0.61 -5.81 2.83 -181.57 -0.51 -6.32 16 23 C 0.07 0.40 9.44 59.85 0.57 0.97 16 24 C 0.47 6.43 7.06 -10.98 -0.08 6.36 16 25 O -0.45 -8.47 15.64 5.56 0.09 -8.38 16 26 C 0.26 3.07 4.63 36.01 0.17 3.24 16 27 F -0.19 -2.03 15.96 2.25 0.04 -1.99 16 28 F -0.17 -2.73 16.95 2.25 0.04 -2.69 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.44 7.22 -51.93 -0.38 0.07 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.06 0.85 6.64 -51.93 -0.34 0.51 16 38 H 0.08 1.03 7.13 -51.93 -0.37 0.66 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 41 H 0.09 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.03 7.15 -51.93 -0.37 0.66 16 44 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 47 H 0.07 0.33 6.40 -51.93 -0.33 0.00 16 48 H 0.13 1.15 7.66 -51.93 -0.40 0.75 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -39.32 397.07 -7.08 -46.40 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.42 Total: -2.45 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.04 Total: 12.55 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.18 Total: -53.70 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.18 Total: -21.58 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.32 -7.08 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230576900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.855 kcal (2) G-P(sol) polarization free energy of solvation -39.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds