Wall clock time and date at job start Wed Apr 1 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34847 * 117.00006 * 2 1 4 4 O 1.21606 * 119.99972 * 359.97438 * 3 2 1 5 5 C 1.46735 * 119.99998 * 180.02562 * 3 2 1 6 6 C 1.36424 * 126.77287 * 359.95899 * 5 3 2 7 7 N 1.35498 * 109.75876 * 180.02562 * 6 5 3 8 8 H 0.97001 * 124.78620 * 180.02562 * 7 6 5 9 9 C 1.37957 * 110.43507 * 0.02562 * 7 6 5 10 10 C 1.39102 * 133.19565 * 179.97438 * 9 7 6 11 11 C 1.38257 * 119.75071 * 180.02562 * 10 9 7 12 12 O 1.35935 * 119.74940 * 179.97438 * 11 10 9 13 13 C 1.42900 * 117.00109 * 5.43517 * 12 11 10 14 14 H 1.09000 * 109.46894 * 36.28070 * 13 12 11 15 15 C 1.50700 * 109.47152 * 276.27667 * 13 12 11 16 16 H 1.08002 * 119.99771 * 119.99580 * 15 13 12 17 17 C 1.37872 * 120.00132 * 300.00110 * 15 13 12 18 18 N 1.31520 * 120.00031 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00271 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46830 * 60.00004 * 19 17 15 21 21 H 1.48503 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47263 * 300.00119 * 19 17 15 23 23 C 1.53004 * 109.46929 * 156.27604 * 13 12 11 24 24 N 1.46893 * 109.47145 * 292.72255 * 23 13 12 25 25 C 1.46892 * 109.47498 * 63.57054 * 24 23 13 26 26 C 1.46900 * 109.47282 * 303.56592 * 24 23 13 27 27 C 1.46898 * 109.47061 * 183.56831 * 24 23 13 28 28 C 1.39182 * 120.50135 * 0.27158 * 11 10 9 29 29 C 1.36720 * 120.38750 * 359.44677 * 28 11 10 30 30 C 1.39269 * 119.85968 * 0.55048 * 29 28 11 31 31 H 1.09004 * 109.46804 * 300.00159 * 1 2 3 32 32 H 1.08998 * 109.46923 * 60.00013 * 1 2 3 33 33 H 1.08998 * 109.46799 * 179.97438 * 1 2 3 34 34 H 1.08001 * 125.12494 * 0.02880 * 6 5 3 35 35 H 1.07997 * 120.12337 * 0.04209 * 10 9 7 36 36 H 0.96994 * 119.99960 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46422 * 172.72376 * 23 13 12 38 38 H 1.08994 * 109.47275 * 52.72706 * 23 13 12 39 39 H 1.09009 * 109.46729 * 289.54955 * 25 24 23 40 40 H 1.09001 * 109.47009 * 49.54223 * 25 24 23 41 41 H 1.08999 * 109.47627 * 169.55246 * 25 24 23 42 42 H 1.08999 * 109.47212 * 179.97438 * 26 24 23 43 43 H 1.09001 * 109.47620 * 300.00269 * 26 24 23 44 44 H 1.09000 * 109.47172 * 60.00221 * 26 24 23 45 45 H 1.08998 * 109.47321 * 300.00305 * 27 24 23 46 46 H 1.09003 * 109.47159 * 59.99859 * 27 24 23 47 47 H 1.09006 * 109.47550 * 179.97438 * 27 24 23 48 48 H 1.08000 * 119.80955 * 179.72364 * 28 11 10 49 49 H 1.07999 * 120.06954 * 180.27552 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4019 2.2214 -0.0005 5 6 3.5296 1.2783 -0.0006 6 6 4.4023 0.2298 -0.0003 7 7 5.6755 0.6935 -0.0005 8 1 6.4681 0.1344 -0.0007 9 6 5.6856 2.0730 -0.0002 10 6 6.7067 3.0177 0.0003 11 6 6.3951 4.3647 0.0010 12 8 7.3929 5.2878 0.0019 13 6 8.7300 4.7981 -0.1184 14 1 8.7435 3.9401 -0.7906 15 6 9.2363 4.3813 1.2384 16 1 9.5412 3.3596 1.4106 17 6 9.3104 5.3043 2.2599 18 7 8.9396 6.5486 2.0502 19 14 9.9374 4.7876 3.9420 20 1 11.3267 4.2782 3.8173 21 1 9.9196 5.9567 4.8575 22 1 9.0649 3.7173 4.4881 23 6 9.6284 5.9012 -0.6814 24 7 9.2429 6.1856 -2.0700 25 6 7.8705 6.7084 -2.1000 26 6 9.3136 4.9496 -2.8608 27 6 10.1594 7.1833 -2.6380 28 6 5.0675 4.7827 0.0069 29 6 4.0537 3.8655 0.0007 30 6 4.3497 2.5047 0.0000 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 4.1209 -0.8130 -0.0002 35 1 7.7389 2.7001 -0.0002 36 1 8.9913 7.1978 2.7689 37 1 10.6676 5.5734 -0.6526 38 1 9.5154 6.8037 -0.0808 39 1 7.1716 5.9085 -1.8550 40 1 7.7721 7.5128 -1.3711 41 1 7.6493 7.0916 -3.0962 42 1 9.0271 5.1606 -3.8911 43 1 10.3320 4.5617 -2.8386 44 1 8.6335 4.2093 -2.4393 45 1 10.1071 8.1004 -2.0513 46 1 11.1779 6.7954 -2.6158 47 1 9.8737 7.3940 -3.6687 48 1 4.8369 5.8378 0.0119 49 1 3.0254 4.1956 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233533572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:51 Heat of formation + Delta-G solvation = 47.821916 kcal Electronic energy + Delta-G solvation = -31724.809509 eV Core-core repulsion = 27543.973521 eV Total energy + Delta-G solvation = -4180.835989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.37966 -42.25572 -40.64361 -39.72020 -37.04639 -36.73422 -34.58440 -32.72338 -31.79767 -30.50177 -30.42465 -30.21893 -29.31140 -28.03601 -27.85053 -25.13930 -24.19947 -24.14587 -22.63134 -22.11957 -20.75282 -19.40549 -19.09319 -18.75023 -18.32413 -18.13409 -17.89979 -17.19647 -17.04694 -17.01265 -16.55337 -16.10773 -15.73224 -15.50621 -15.16449 -15.08938 -14.87965 -14.63880 -14.50134 -14.27732 -14.12401 -14.11782 -14.00063 -13.86606 -13.77404 -13.57642 -13.37638 -13.16301 -12.88124 -12.68459 -12.49899 -12.20201 -12.19158 -11.86743 -11.57832 -11.51201 -11.23560 -11.11156 -10.82476 -10.25404 -10.18330 -8.90622 -8.27603 -7.79373 -6.01880 0.17812 0.29061 0.88485 1.12331 1.92161 2.08915 2.19381 2.21426 2.25438 2.26365 2.31399 2.35135 2.44284 2.74392 2.98599 3.11736 3.18450 3.21265 3.38685 3.48783 3.62475 3.65498 3.70637 3.73765 3.81326 3.86533 4.01170 4.09700 4.10280 4.22697 4.24419 4.36641 4.38604 4.44464 4.51234 4.57169 4.73583 4.74943 4.89820 4.93774 5.05610 5.16327 5.55530 5.69075 5.70316 5.83177 5.90865 6.05996 6.16769 6.23047 6.48352 6.89057 7.15566 7.19703 7.83163 9.22823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.537 3.463 4 O -0.513 6.513 5 C -0.218 4.218 6 C 0.131 3.869 7 N -0.577 5.577 8 H 0.422 0.578 9 C 0.122 3.878 10 C -0.217 4.217 11 C 0.174 3.826 12 O -0.302 6.302 13 C 0.194 3.806 14 H 0.046 0.954 15 C -0.567 4.567 16 H 0.076 0.924 17 C 0.094 3.906 18 N -0.859 5.859 19 Si 0.902 3.098 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.001 4.001 24 N -0.273 5.273 25 C -0.040 4.040 26 C -0.047 4.047 27 C -0.040 4.040 28 C -0.167 4.167 29 C -0.036 4.036 30 C -0.102 4.102 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.186 0.814 35 H 0.135 0.865 36 H 0.280 0.720 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.130 0.870 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 0.106 -16.098 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.280 6.280 3 C 0.383 3.617 4 O -0.402 6.402 5 C -0.227 4.227 6 C -0.003 4.003 7 N -0.178 5.178 8 H 0.259 0.741 9 C 0.017 3.983 10 C -0.238 4.238 11 C 0.126 3.874 12 O -0.216 6.216 13 C 0.139 3.861 14 H 0.063 0.937 15 C -0.604 4.604 16 H 0.094 0.906 17 C -0.117 4.117 18 N -0.493 5.493 19 Si 0.728 3.272 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.119 4.119 24 N 0.069 4.931 25 C -0.181 4.181 26 C -0.189 4.189 27 C -0.182 4.182 28 C -0.186 4.186 29 C -0.054 4.054 30 C -0.106 4.106 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.203 0.797 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.176 0.824 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.148 0.852 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.871 0.774 -15.995 16.739 hybrid contribution 0.556 -0.710 1.226 1.522 sum 5.427 0.064 -14.769 15.735 Atomic orbital electron populations 1.23243 0.75996 1.03611 1.02662 1.86541 1.23544 1.32960 1.84974 1.20064 0.87739 0.81284 0.72615 1.90840 1.66588 1.35929 1.46878 1.18956 0.88696 0.93088 1.21930 1.22216 0.82481 0.99199 0.96377 1.41621 1.07888 1.05653 1.62676 0.74069 1.17934 0.94690 0.82629 1.03024 1.20060 0.98051 0.90929 1.14784 1.18439 0.88383 0.87295 0.93261 1.86275 1.15338 1.33873 1.86110 1.20286 0.78712 0.89227 0.97830 0.93698 1.21131 1.47877 0.97591 0.93779 0.90628 1.24996 0.92097 0.94571 1.00016 1.69600 1.42000 1.02806 1.34882 0.86405 0.79752 0.79283 0.81761 1.19438 1.20294 1.19326 1.24873 1.02733 1.08900 0.75430 1.46390 1.15339 1.14020 1.17366 1.24284 0.81059 1.06249 1.06514 1.24066 1.08595 0.87660 0.98585 1.24001 0.96379 0.94750 1.03091 1.20106 0.89555 1.00256 1.08682 1.20166 0.99520 0.90169 0.95591 1.18494 0.90560 0.92428 1.09087 0.91841 0.91896 0.88098 0.79739 0.84708 0.90998 0.85950 0.82356 0.85220 0.85949 0.88218 0.87150 0.86684 0.86321 0.86461 0.86882 0.87214 0.85238 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.03 10.57 101.05 1.07 1.10 16 2 O -0.36 -1.16 10.39 -40.89 -0.43 -1.59 16 3 C 0.54 2.84 7.93 34.16 0.27 3.11 16 4 O -0.51 -4.05 15.94 -19.35 -0.31 -4.36 16 5 C -0.22 -0.89 6.27 -103.33 -0.65 -1.54 16 6 C 0.13 0.08 11.62 -16.59 -0.19 -0.11 16 7 N -0.58 -0.08 5.99 -10.47 -0.06 -0.15 16 8 H 0.42 -1.30 8.96 -40.82 -0.37 -1.67 16 9 C 0.12 0.37 7.25 -83.98 -0.61 -0.24 16 10 C -0.22 -0.59 8.69 -39.25 -0.34 -0.93 16 11 C 0.17 0.53 6.08 -39.22 -0.24 0.29 16 12 O -0.30 -0.57 6.21 -19.54 -0.12 -0.69 16 13 C 0.19 0.05 1.39 -27.88 -0.04 0.01 16 14 H 0.05 -0.10 4.06 -51.93 -0.21 -0.31 16 15 C -0.57 -3.44 7.85 -34.44 -0.27 -3.71 16 16 H 0.08 0.53 7.81 -52.49 -0.41 0.12 16 17 C 0.09 0.79 5.24 -17.82 -0.09 0.69 16 18 N -0.86 -7.18 10.96 55.43 0.61 -6.57 16 19 Si 0.90 7.99 29.54 -169.99 -5.02 2.97 16 20 H -0.27 -2.38 7.11 56.52 0.40 -1.98 16 21 H -0.28 -2.77 7.11 56.52 0.40 -2.37 16 22 H -0.27 -2.78 7.11 56.52 0.40 -2.37 16 23 C 0.00 0.00 3.49 -3.83 -0.01 -0.01 16 24 N -0.27 2.72 0.05 -395.63 -0.02 2.70 16 25 C -0.04 0.35 7.10 60.06 0.43 0.78 16 26 C -0.05 0.54 7.56 60.06 0.45 0.99 16 27 C -0.04 0.51 7.99 60.06 0.48 0.99 16 28 C -0.17 -0.56 9.91 -39.78 -0.39 -0.96 16 29 C -0.04 -0.17 9.80 -39.75 -0.39 -0.56 16 30 C -0.10 -0.49 6.27 -104.91 -0.66 -1.15 16 31 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.19 -0.52 8.06 -52.49 -0.42 -0.95 16 35 H 0.14 0.25 5.62 -52.49 -0.29 -0.04 16 36 H 0.28 2.59 8.31 -40.82 -0.34 2.25 16 37 H 0.12 -0.64 8.10 -51.93 -0.42 -1.06 16 38 H 0.16 -0.20 6.15 -51.93 -0.32 -0.52 16 39 H 0.13 -0.83 5.31 -51.92 -0.28 -1.11 16 40 H 0.12 -0.87 7.93 -51.93 -0.41 -1.29 16 41 H 0.10 -1.16 7.98 -51.93 -0.41 -1.58 16 42 H 0.11 -1.49 8.14 -51.93 -0.42 -1.91 16 43 H 0.11 -1.42 8.14 -51.93 -0.42 -1.85 16 44 H 0.12 -1.12 5.85 -51.93 -0.30 -1.43 16 45 H 0.12 -1.40 8.14 -51.93 -0.42 -1.82 16 46 H 0.11 -1.49 8.13 -51.93 -0.42 -1.92 16 47 H 0.11 -1.57 8.06 -51.93 -0.42 -1.99 16 48 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 49 H 0.13 0.65 7.44 -52.49 -0.39 0.26 16 LS Contribution 390.11 15.07 5.88 5.88 Total: 0.00 -20.24 390.11 -7.83 -28.08 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -7.17 Total: -25.02 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.19 Total: -1.25 kcal Atomic # 7 Polarization: -4.54 SS G_CDS: 0.53 Total: -4.01 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.85 Total: -6.64 kcal Atomic # 14 Polarization: 7.99 SS G_CDS: -5.02 Total: 2.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -20.24 -7.83 -28.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233533572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.899 kcal (2) G-P(sol) polarization free energy of solvation -20.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds