Wall clock time and date at job start Wed Apr 1 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34847 * 117.00006 * 2 1 4 4 O 1.21606 * 119.99972 * 359.97438 * 3 2 1 5 5 C 1.46735 * 119.99998 * 180.02562 * 3 2 1 6 6 C 1.36424 * 126.77287 * 359.95899 * 5 3 2 7 7 N 1.35498 * 109.75876 * 180.02562 * 6 5 3 8 8 H 0.97001 * 124.78620 * 180.02562 * 7 6 5 9 9 C 1.37957 * 110.43507 * 0.02562 * 7 6 5 10 10 C 1.39102 * 133.19565 * 179.97438 * 9 7 6 11 11 C 1.38257 * 119.75071 * 180.02562 * 10 9 7 12 12 O 1.35935 * 119.74940 * 179.97438 * 11 10 9 13 13 C 1.42900 * 117.00109 * 5.43517 * 12 11 10 14 14 H 1.09000 * 109.46894 * 36.28070 * 13 12 11 15 15 C 1.50700 * 109.47152 * 276.27667 * 13 12 11 16 16 H 1.08002 * 119.99771 * 119.99580 * 15 13 12 17 17 C 1.37872 * 120.00132 * 300.00110 * 15 13 12 18 18 N 1.31520 * 120.00031 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00271 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46830 * 60.00004 * 19 17 15 21 21 H 1.48503 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47263 * 300.00119 * 19 17 15 23 23 C 1.53004 * 109.46929 * 156.27604 * 13 12 11 24 24 N 1.46893 * 109.47145 * 292.72255 * 23 13 12 25 25 C 1.46892 * 109.47498 * 63.57054 * 24 23 13 26 26 C 1.46900 * 109.47282 * 303.56592 * 24 23 13 27 27 C 1.46898 * 109.47061 * 183.56831 * 24 23 13 28 28 C 1.39182 * 120.50135 * 0.27158 * 11 10 9 29 29 C 1.36720 * 120.38750 * 359.44677 * 28 11 10 30 30 C 1.39269 * 119.85968 * 0.55048 * 29 28 11 31 31 H 1.09004 * 109.46804 * 300.00159 * 1 2 3 32 32 H 1.08998 * 109.46923 * 60.00013 * 1 2 3 33 33 H 1.08998 * 109.46799 * 179.97438 * 1 2 3 34 34 H 1.08001 * 125.12494 * 0.02880 * 6 5 3 35 35 H 1.07997 * 120.12337 * 0.04209 * 10 9 7 36 36 H 0.96994 * 119.99960 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46422 * 172.72376 * 23 13 12 38 38 H 1.08994 * 109.47275 * 52.72706 * 23 13 12 39 39 H 1.09009 * 109.46729 * 289.54955 * 25 24 23 40 40 H 1.09001 * 109.47009 * 49.54223 * 25 24 23 41 41 H 1.08999 * 109.47627 * 169.55246 * 25 24 23 42 42 H 1.08999 * 109.47212 * 179.97438 * 26 24 23 43 43 H 1.09001 * 109.47620 * 300.00269 * 26 24 23 44 44 H 1.09000 * 109.47172 * 60.00221 * 26 24 23 45 45 H 1.08998 * 109.47321 * 300.00305 * 27 24 23 46 46 H 1.09003 * 109.47159 * 59.99859 * 27 24 23 47 47 H 1.09006 * 109.47550 * 179.97438 * 27 24 23 48 48 H 1.08000 * 119.80955 * 179.72364 * 28 11 10 49 49 H 1.07999 * 120.06954 * 180.27552 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4019 2.2214 -0.0005 5 6 3.5296 1.2783 -0.0006 6 6 4.4023 0.2298 -0.0003 7 7 5.6755 0.6935 -0.0005 8 1 6.4681 0.1344 -0.0007 9 6 5.6856 2.0730 -0.0002 10 6 6.7067 3.0177 0.0003 11 6 6.3951 4.3647 0.0010 12 8 7.3929 5.2878 0.0019 13 6 8.7300 4.7981 -0.1184 14 1 8.7435 3.9401 -0.7906 15 6 9.2363 4.3813 1.2384 16 1 9.5412 3.3596 1.4106 17 6 9.3104 5.3043 2.2599 18 7 8.9396 6.5486 2.0502 19 14 9.9374 4.7876 3.9420 20 1 11.3267 4.2782 3.8173 21 1 9.9196 5.9567 4.8575 22 1 9.0649 3.7173 4.4881 23 6 9.6284 5.9012 -0.6814 24 7 9.2429 6.1856 -2.0700 25 6 7.8705 6.7084 -2.1000 26 6 9.3136 4.9496 -2.8608 27 6 10.1594 7.1833 -2.6380 28 6 5.0675 4.7827 0.0069 29 6 4.0537 3.8655 0.0007 30 6 4.3497 2.5047 0.0000 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 4.1209 -0.8130 -0.0002 35 1 7.7389 2.7001 -0.0002 36 1 8.9913 7.1978 2.7689 37 1 10.6676 5.5734 -0.6526 38 1 9.5154 6.8037 -0.0808 39 1 7.1716 5.9085 -1.8550 40 1 7.7721 7.5128 -1.3711 41 1 7.6493 7.0916 -3.0962 42 1 9.0271 5.1606 -3.8911 43 1 10.3320 4.5617 -2.8386 44 1 8.6335 4.2093 -2.4393 45 1 10.1071 8.1004 -2.0513 46 1 11.1779 6.7954 -2.6158 47 1 9.8737 7.3940 -3.6687 48 1 4.8369 5.8378 0.0119 49 1 3.0254 4.1956 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233533572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:45 Heat of formation + Delta-G solvation = 41.962703 kcal Electronic energy + Delta-G solvation = -31725.063584 eV Core-core repulsion = 27543.973521 eV Total energy + Delta-G solvation = -4181.090063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.180 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -42.80752 -42.37532 -40.92553 -39.80730 -37.34984 -36.93536 -34.99643 -32.92615 -31.80860 -30.65507 -29.64759 -29.48436 -29.32446 -28.15051 -27.86071 -25.06891 -24.40953 -24.01568 -22.70168 -22.15810 -21.00266 -19.58066 -19.07869 -18.40969 -18.18443 -17.81597 -17.57406 -17.28619 -17.26068 -17.10726 -16.71520 -16.55945 -15.86797 -15.63003 -15.21341 -15.04661 -14.79913 -14.42257 -14.39364 -14.12927 -14.10099 -13.76679 -13.60113 -13.27459 -13.24908 -13.19260 -13.12737 -13.03725 -12.95183 -12.88869 -12.74297 -12.68191 -12.64882 -12.17360 -12.09325 -11.75278 -11.55450 -11.25603 -11.13353 -10.82357 -10.45525 -9.13530 -8.52821 -8.33838 -6.54443 -0.03258 0.62553 0.87301 1.03277 1.33239 1.42593 1.50098 1.75863 2.09718 2.18354 2.27901 2.52981 2.87207 2.94905 3.09045 3.14240 3.29756 3.72231 3.86509 3.91908 3.98031 4.13850 4.22618 4.29953 4.31755 4.34761 4.35924 4.36056 4.37123 4.45834 4.50936 4.56274 4.62488 4.63675 4.66130 4.77020 4.79104 4.79548 4.82301 4.91516 5.00875 5.18814 5.32631 5.43735 5.46252 5.57884 5.62285 5.65683 5.78934 5.95804 6.43609 6.51265 6.85371 6.91397 7.28611 8.59900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.535 3.465 4 O -0.555 6.555 5 C -0.264 4.264 6 C 0.169 3.831 7 N -0.561 5.561 8 H 0.440 0.560 9 C 0.115 3.885 10 C -0.212 4.212 11 C 0.166 3.834 12 O -0.301 6.301 13 C 0.187 3.813 14 H 0.074 0.926 15 C -0.564 4.564 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.866 5.866 19 Si 0.913 3.087 20 H -0.268 1.268 21 H -0.298 1.298 22 H -0.293 1.293 23 C 0.017 3.983 24 N -0.259 5.259 25 C -0.040 4.040 26 C -0.053 4.053 27 C -0.043 4.043 28 C -0.168 4.168 29 C -0.055 4.055 30 C -0.126 4.126 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.227 0.773 35 H 0.146 0.854 36 H 0.267 0.733 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.139 0.861 48 H 0.135 0.865 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -1.349 -19.028 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.384 3.616 4 O -0.447 6.447 5 C -0.273 4.273 6 C 0.034 3.966 7 N -0.164 5.164 8 H 0.282 0.718 9 C 0.009 3.991 10 C -0.234 4.234 11 C 0.118 3.882 12 O -0.214 6.214 13 C 0.133 3.867 14 H 0.092 0.908 15 C -0.602 4.602 16 H 0.082 0.918 17 C -0.134 4.134 18 N -0.501 5.501 19 Si 0.742 3.258 20 H -0.192 1.192 21 H -0.224 1.224 22 H -0.220 1.220 23 C -0.104 4.104 24 N 0.083 4.917 25 C -0.182 4.182 26 C -0.194 4.194 27 C -0.183 4.183 28 C -0.187 4.187 29 C -0.074 4.074 30 C -0.130 4.130 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.243 0.757 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.145 0.855 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.456 -0.708 -18.938 20.020 hybrid contribution 0.071 -0.382 2.100 2.136 sum 6.527 -1.090 -16.837 18.091 Atomic orbital electron populations 1.23493 0.74826 1.05596 1.02216 1.86525 1.24722 1.31780 1.84557 1.20355 0.88317 0.81260 0.71710 1.90809 1.67494 1.37214 1.49187 1.19065 0.88604 0.94020 1.25564 1.22770 0.81698 1.00066 0.92108 1.41653 1.08680 1.04759 1.61279 0.71844 1.17979 0.93946 0.83975 1.03157 1.20166 0.98421 0.90750 1.14034 1.18506 0.88517 0.87757 0.93426 1.86320 1.15576 1.33442 1.86056 1.20438 0.77922 0.92471 0.95858 0.90828 1.21441 1.45886 0.96532 0.96297 0.91848 1.25102 0.93429 0.95175 0.99691 1.69687 1.44160 1.02501 1.33766 0.86329 0.79338 0.77412 0.82691 1.19245 1.22424 1.21951 1.24131 1.02039 1.05780 0.78464 1.46005 1.15319 1.15598 1.14748 1.24221 0.81100 1.04723 1.08112 1.24272 1.09270 0.86283 0.99578 1.24206 0.96384 0.93529 1.04199 1.20165 0.89804 1.00373 1.08373 1.20141 0.99136 0.90941 0.97198 1.18797 0.91897 0.92789 1.09503 0.92578 0.92185 0.84805 0.75710 0.83665 0.92314 0.84403 0.85153 0.87631 0.88003 0.84473 0.84048 0.84988 0.88272 0.87288 0.85532 0.84228 0.84722 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.57 113.37 1.20 1.26 16 2 O -0.36 -2.35 10.39 -57.60 -0.60 -2.95 16 3 C 0.54 6.47 7.93 70.04 0.56 7.03 16 4 O -0.55 -10.36 15.94 19.49 0.31 -10.05 16 5 C -0.26 -2.34 6.27 -19.03 -0.12 -2.46 16 6 C 0.17 -0.06 11.62 83.70 0.97 0.91 16 7 N -0.56 0.70 5.99 -187.04 -1.12 -0.42 16 8 H 0.44 -3.79 8.96 -92.71 -0.83 -4.62 16 9 C 0.11 0.70 7.25 38.91 0.28 0.99 16 10 C -0.21 -1.19 8.69 22.48 0.20 -0.99 16 11 C 0.17 1.18 6.08 22.50 0.14 1.31 16 12 O -0.30 -1.39 6.21 -92.82 -0.58 -1.97 16 13 C 0.19 0.06 1.39 29.85 0.04 0.11 16 14 H 0.07 -0.40 4.06 -2.39 -0.01 -0.41 16 15 C -0.56 -7.17 7.85 25.60 0.20 -6.96 16 16 H 0.06 0.92 7.81 -2.91 -0.02 0.90 16 17 C 0.07 1.35 5.24 84.65 0.44 1.80 16 18 N -0.87 -16.15 10.96 21.45 0.24 -15.91 16 19 Si 0.91 18.27 29.54 68.60 2.03 20.29 16 20 H -0.27 -5.10 7.11 99.48 0.71 -4.40 16 21 H -0.30 -6.83 7.11 99.48 0.71 -6.13 16 22 H -0.29 -6.90 7.11 99.48 0.71 -6.19 16 23 C 0.02 -0.15 3.49 86.31 0.30 0.15 16 24 N -0.26 5.62 0.05 ******* -0.07 5.55 16 25 C -0.04 0.73 7.10 127.69 0.91 1.64 16 26 C -0.05 1.35 7.56 127.69 0.97 2.32 16 27 C -0.04 1.18 7.99 127.69 1.02 2.20 16 28 C -0.17 -1.50 9.91 22.14 0.22 -1.28 16 29 C -0.06 -0.67 9.80 22.16 0.22 -0.45 16 30 C -0.13 -1.41 6.27 -20.05 -0.13 -1.54 16 31 H 0.06 0.19 8.14 -2.38 -0.02 0.18 16 32 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.13 -0.69 8.14 -2.39 -0.02 -0.70 16 34 H 0.23 -2.04 8.06 -2.91 -0.02 -2.06 16 35 H 0.15 0.42 5.62 -2.91 -0.02 0.40 16 36 H 0.27 5.63 8.31 -92.71 -0.77 4.86 16 37 H 0.14 -1.66 8.10 -2.39 -0.02 -1.68 16 38 H 0.13 -0.26 6.15 -2.39 -0.01 -0.27 16 39 H 0.11 -1.33 5.31 -2.38 -0.01 -1.35 16 40 H 0.10 -1.38 7.93 -2.39 -0.02 -1.40 16 41 H 0.14 -3.53 7.98 -2.39 -0.02 -3.55 16 42 H 0.14 -4.38 8.14 -2.39 -0.02 -4.40 16 43 H 0.13 -3.73 8.14 -2.39 -0.02 -3.75 16 44 H 0.10 -2.06 5.85 -2.39 -0.01 -2.07 16 45 H 0.11 -2.73 8.14 -2.39 -0.02 -2.74 16 46 H 0.13 -3.74 8.13 -2.39 -0.02 -3.76 16 47 H 0.14 -4.57 8.06 -2.38 -0.02 -4.59 16 48 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 49 H 0.12 1.66 7.44 -2.91 -0.02 1.64 16 Total: 0.00 -52.30 390.11 7.77 -44.53 By element: Atomic # 1 Polarization: -45.24 SS G_CDS: 0.15 Total: -45.09 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 7.41 Total: 6.02 kcal Atomic # 7 Polarization: -9.83 SS G_CDS: -0.95 Total: -10.78 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.86 Total: -14.96 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: 2.03 Total: 20.29 kcal Total: -52.30 7.77 -44.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233533572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.488 kcal (2) G-P(sol) polarization free energy of solvation -52.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds