Wall clock time and date at job start Wed Apr 1 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48666 * 111.00027 * 2 1 4 4 C 1.54706 * 104.64322 * 201.60695 * 3 2 1 5 5 C 1.53027 * 104.57838 * 23.65406 * 4 3 2 6 6 C 1.53964 * 111.38212 * 121.04730 * 5 4 3 7 7 C 1.55142 * 101.47248 * 154.92145 * 6 5 4 8 8 N 1.47544 * 104.97554 * 324.27955 * 7 6 5 9 9 C 1.34778 * 125.66669 * 203.88805 * 8 7 6 10 10 O 1.21362 * 119.99757 * 180.02562 * 9 8 7 11 11 C 1.49302 * 120.00231 * 0.02562 * 9 8 7 12 12 O 1.21408 * 120.00012 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00231 * 180.02562 * 11 9 8 14 14 C 1.40292 * 120.00216 * 179.97438 * 13 11 9 15 15 C 1.40716 * 126.10200 * 0.02876 * 14 13 11 16 16 N 1.30874 * 108.38044 * 179.97438 * 15 14 13 17 17 N 1.40058 * 108.43321 * 0.02562 * 16 15 14 18 18 C 1.37296 * 126.05582 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.39015 * 120.00060 * 0.02562 * 18 17 16 21 21 N 1.31277 * 119.99377 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00105 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47227 * 89.99961 * 22 20 18 24 24 H 1.48499 * 109.47180 * 209.99912 * 22 20 18 25 25 H 1.48501 * 109.47118 * 329.99722 * 22 20 18 26 26 C 1.35785 * 126.09969 * 179.71956 * 14 13 11 27 27 C 1.47335 * 108.65919 * 23.90500 * 8 7 6 28 28 C 1.48862 * 110.99821 * 244.33295 * 2 1 3 29 29 H 1.09003 * 109.47198 * 59.87687 * 1 2 3 30 30 H 1.09000 * 109.47158 * 179.87189 * 1 2 3 31 31 H 1.08997 * 109.47031 * 299.87089 * 1 2 3 32 32 H 1.08998 * 110.40213 * 82.81472 * 3 2 1 33 33 H 1.09005 * 110.50153 * 320.44546 * 3 2 1 34 34 H 1.09005 * 110.41009 * 264.88228 * 4 3 2 35 35 H 1.08992 * 110.41822 * 142.43507 * 4 3 2 36 36 H 1.09002 * 110.99790 * 36.88528 * 6 5 4 37 37 H 1.08998 * 111.07558 * 272.99283 * 6 5 4 38 38 H 1.08994 * 110.33882 * 205.40230 * 7 6 5 39 39 H 1.09006 * 110.42410 * 83.19562 * 7 6 5 40 40 H 0.97001 * 119.99613 * 0.02562 * 13 11 9 41 41 H 1.08010 * 125.81143 * 359.97438 * 15 14 13 42 42 H 0.97006 * 119.99965 * 179.97438 * 21 20 18 43 43 H 1.08003 * 126.25231 * 359.97438 * 26 14 13 44 44 H 1.09002 * 109.96943 * 117.42512 * 27 8 7 45 45 H 1.08997 * 109.97140 * 238.65625 * 27 8 7 46 46 H 1.09001 * 110.47190 * 39.29296 * 28 2 1 47 47 H 1.08999 * 110.46974 * 276.70109 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3879 0.0000 4 6 3.4411 1.2543 -0.5512 5 6 3.4225 -0.0401 -1.3671 6 6 3.8048 0.2168 -2.8363 7 6 4.3497 -1.1723 -3.2608 8 7 5.0372 -1.6941 -2.0642 9 6 6.0204 -2.6160 -2.0621 10 8 6.5153 -2.9730 -1.0130 11 6 6.5008 -3.1981 -3.3503 12 8 6.0054 -2.8413 -4.3998 13 7 7.4836 -4.1203 -3.3482 14 6 7.9346 -4.6677 -4.5587 15 6 7.4552 -4.3485 -5.8426 16 7 8.1176 -5.0596 -6.7191 17 7 9.0419 -5.8582 -6.0338 18 6 9.9230 -6.7441 -6.6029 19 1 10.5958 -7.3132 -5.9784 20 6 9.9491 -6.9087 -7.9830 21 7 9.1310 -6.2174 -8.7420 22 14 11.1483 -8.1135 -8.7574 23 1 10.5103 -9.4506 -8.8593 24 1 11.5209 -7.6382 -10.1140 25 1 12.3671 -8.2096 -7.9145 26 6 8.9156 -5.5957 -4.7008 27 6 4.4700 -1.0402 -0.8719 28 6 2.0024 -0.6020 -1.2526 29 1 -0.3634 0.5158 -0.8889 30 1 -0.3633 -1.0277 -0.0023 31 1 -0.3633 0.5118 0.8911 32 1 2.0186 1.7884 1.0136 33 1 1.4036 2.0264 -0.6502 34 1 4.1562 1.1772 0.2679 35 1 3.6839 2.1032 -1.1903 36 1 4.5793 0.9802 -2.9105 37 1 2.9305 0.4910 -3.4266 38 1 5.0535 -1.0670 -4.0864 39 1 3.5297 -1.8321 -3.5446 40 1 7.8786 -4.4062 -2.5097 41 1 6.6735 -3.6376 -6.0667 42 1 9.1494 -6.3319 -9.7051 43 1 9.4896 -6.0453 -3.9041 44 1 3.9999 -1.7834 -0.2279 45 1 5.2547 -0.5172 -0.3254 46 1 1.4012 -0.2959 -2.1088 47 1 2.0278 -1.6887 -1.1726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261241789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:10 Heat of formation + Delta-G solvation = 41.161149 kcal Electronic energy + Delta-G solvation = -30135.732947 eV Core-core repulsion = 25935.130705 eV Total energy + Delta-G solvation = -4200.602242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.02973 -40.07500 -39.25336 -37.83510 -36.81709 -34.39839 -33.24145 -32.75819 -30.46315 -30.32336 -29.25579 -28.10815 -27.25684 -25.73881 -24.83192 -23.30130 -22.61328 -21.69118 -21.01943 -19.74670 -19.65147 -19.39562 -17.64766 -17.31583 -16.52426 -16.20464 -16.01689 -15.69592 -15.51086 -15.13085 -15.05527 -14.66762 -14.45606 -13.97585 -13.87538 -13.72666 -13.44272 -13.12943 -13.07059 -12.90236 -12.79869 -12.56945 -12.46029 -12.04810 -11.80362 -11.73455 -11.72064 -11.56034 -11.29507 -11.28494 -11.07796 -10.93448 -10.85060 -10.70048 -10.55766 -10.28031 -9.23283 -9.02828 -8.91600 -8.87355 -8.76306 -8.13059 -6.77591 -6.60731 -4.27826 1.68556 2.48865 2.93199 3.03610 3.08461 3.33325 3.57361 3.69320 3.71668 3.85630 4.07019 4.14601 4.17536 4.37383 4.58258 4.59801 4.76710 4.83534 4.96962 4.97988 5.00309 5.00791 5.09294 5.22950 5.25530 5.35156 5.41858 5.47252 5.48579 5.57815 5.62923 5.70360 5.76229 5.85899 5.91272 6.10251 6.20992 6.36164 6.38435 6.56951 6.76966 6.88690 6.95601 7.16317 7.24337 7.70976 7.83237 8.11959 8.18429 8.49737 8.69890 9.31138 9.59807 10.35095 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.001873 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.583820 B =14944.585343 C =15295.130927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.031 3.969 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.125 4.125 7 C 0.098 3.902 8 N -0.595 5.595 9 C 0.527 3.473 10 O -0.530 6.530 11 C 0.488 3.512 12 O -0.519 6.519 13 N -0.584 5.584 14 C -0.068 4.068 15 C -0.027 4.027 16 N -0.261 5.261 17 N -0.139 5.139 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.077 4.077 27 C 0.126 3.874 28 C 0.046 3.954 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 13.698 14.048 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.241 5.241 3 C -0.097 4.097 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.163 4.163 7 C -0.024 4.024 8 N -0.329 5.329 9 C 0.311 3.689 10 O -0.406 6.406 11 C 0.269 3.731 12 O -0.397 6.397 13 N -0.226 5.226 14 C -0.174 4.174 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.229 4.229 27 C 0.004 3.996 28 C -0.082 4.082 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.244 0.756 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.981 13.149 12.860 22.512 hybrid contribution 0.215 -0.067 0.361 0.425 sum -12.766 13.083 13.221 22.559 Atomic orbital electron populations 1.22510 0.87849 1.02386 1.00801 1.65441 1.08284 1.15218 1.35114 1.23214 0.95110 0.90097 1.01269 1.22273 0.96974 0.96115 0.99481 1.21489 0.94770 0.95456 0.96119 1.22927 1.01746 0.97530 0.94103 1.22725 0.97881 0.93291 0.88540 1.48321 1.35471 1.39809 1.09345 1.19981 0.79522 0.79543 0.89830 1.90736 1.56482 1.60162 1.33249 1.19544 0.82411 0.82334 0.88853 1.90598 1.56901 1.60097 1.32112 1.42142 1.34135 1.37553 1.08787 1.17246 1.06711 1.08183 0.85260 1.24134 1.03497 1.03720 0.88871 1.78255 1.04755 1.08215 1.17923 1.44557 1.20961 1.22977 1.02047 1.19925 1.15221 1.18517 0.91738 0.86445 1.25666 0.97503 0.97654 0.96315 1.70207 1.30449 1.33011 1.05750 0.85804 0.79806 0.79605 0.78825 1.19536 1.20047 1.18738 1.21309 1.06128 1.07168 0.88261 1.21966 0.95174 0.94926 0.87548 1.23117 0.93338 1.00556 0.91175 0.95306 0.91123 0.91249 0.89962 0.93676 0.90260 0.90410 0.90019 0.89591 0.87491 0.90889 0.75607 0.80563 0.91373 0.83360 0.90423 0.90802 0.92947 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.52 60.06 0.57 0.66 16 2 N -0.52 -4.04 5.66 -238.45 -1.35 -5.39 16 3 C 0.03 0.20 6.53 -1.95 -0.01 0.19 16 4 C -0.11 -0.72 6.30 -25.82 -0.16 -0.88 16 5 C -0.08 -0.61 0.80 -153.89 -0.12 -0.74 16 6 C -0.12 -0.99 5.90 -25.09 -0.15 -1.13 16 7 C 0.10 1.10 5.99 -2.34 -0.01 1.09 16 8 N -0.59 -7.79 3.34 -171.37 -0.57 -8.36 16 9 C 0.53 8.54 7.91 -11.65 -0.09 8.45 16 10 O -0.53 -9.37 16.81 5.49 0.09 -9.28 16 11 C 0.49 8.97 7.82 -11.65 -0.09 8.88 16 12 O -0.52 -10.25 10.93 5.45 0.06 -10.19 16 13 N -0.58 -11.18 5.45 -10.46 -0.06 -11.24 16 14 C -0.07 -1.58 6.90 -83.93 -0.58 -2.15 16 15 C -0.03 -0.68 10.84 -17.02 -0.18 -0.87 16 16 N -0.26 -7.45 10.39 30.81 0.32 -7.13 16 17 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 18 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 19 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.12 11.81 55.50 0.66 -20.47 16 22 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 27 C 0.13 1.33 5.98 -3.56 -0.02 1.31 16 28 C 0.05 0.36 5.50 -2.66 -0.01 0.35 16 29 H 0.03 0.17 7.98 -51.93 -0.41 -0.25 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.26 7.96 -51.93 -0.41 -0.15 16 34 H 0.08 0.53 7.41 -51.93 -0.38 0.14 16 35 H 0.08 0.43 7.62 -51.93 -0.40 0.03 16 36 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 37 H 0.09 0.55 7.65 -51.93 -0.40 0.16 16 38 H 0.11 1.41 6.17 -51.93 -0.32 1.09 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.41 6.85 8.29 -40.82 -0.34 6.51 16 41 H 0.18 4.37 5.92 -52.48 -0.31 4.06 16 42 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 44 H 0.08 0.88 7.63 -51.93 -0.40 0.48 16 45 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 46 H 0.05 0.38 7.35 -51.93 -0.38 0.00 16 47 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -32.42 379.99 -8.11 -40.52 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.61 Total: 10.30 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.31 Total: 5.64 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -1.05 Total: -56.39 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.15 Total: -19.47 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.42 -8.11 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261241789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.685 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds