Wall clock time and date at job start Wed Apr 1 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48664 * 111.00325 * 2 1 4 4 C 1.55250 * 103.41852 * 201.06460 * 3 2 1 5 5 C 1.53221 * 102.54889 * 36.23518 * 4 3 2 6 6 C 1.53726 * 111.52705 * 216.49542 * 5 4 3 7 7 C 1.54576 * 102.78789 * 206.05336 * 6 5 4 8 8 N 1.47138 * 107.32957 * 20.89840 * 7 6 5 9 9 C 1.34769 * 125.61244 * 180.90515 * 8 7 6 10 10 O 1.21364 * 120.00437 * 180.02562 * 9 8 7 11 11 C 1.49314 * 119.99699 * 0.02562 * 9 8 7 12 12 O 1.21405 * 119.99899 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99989 * 179.97438 * 11 9 8 14 14 C 1.40294 * 120.00100 * 179.97438 * 13 11 9 15 15 C 1.40723 * 126.09847 * 0.02562 * 14 13 11 16 16 N 1.30880 * 108.37169 * 179.97438 * 15 14 13 17 17 N 1.40056 * 108.43732 * 359.76147 * 16 15 14 18 18 C 1.37294 * 126.05393 * 180.28502 * 17 16 15 19 19 H 1.08001 * 120.00237 * 180.11841 * 18 17 16 20 20 C 1.39000 * 120.00177 * 0.12442 * 18 17 16 21 21 N 1.31289 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00379 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46837 * 59.99751 * 22 20 18 24 24 H 1.48504 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47062 * 299.99819 * 22 20 18 26 26 C 1.35790 * 126.09925 * 180.02562 * 14 13 11 27 27 C 1.47706 * 108.77907 * 1.17072 * 8 7 6 28 28 C 1.48302 * 111.00164 * 242.52778 * 2 1 3 29 29 H 1.08997 * 109.46924 * 177.46807 * 1 2 3 30 30 H 1.09000 * 109.47272 * 297.46974 * 1 2 3 31 31 H 1.08998 * 109.47077 * 57.46938 * 1 2 3 32 32 H 1.09003 * 110.62732 * 319.54899 * 3 2 1 33 33 H 1.09000 * 110.63247 * 82.57740 * 3 2 1 34 34 H 1.09000 * 110.79475 * 277.97268 * 4 3 2 35 35 H 1.09004 * 110.79432 * 154.49849 * 4 3 2 36 36 H 1.09000 * 110.74934 * 87.72831 * 6 5 4 37 37 H 1.09003 * 110.75225 * 324.38210 * 6 5 4 38 38 H 1.08996 * 109.87347 * 261.46397 * 7 6 5 39 39 H 1.08999 * 109.87417 * 140.33387 * 7 6 5 40 40 H 0.97007 * 120.00081 * 0.02562 * 13 11 9 41 41 H 1.07996 * 125.81249 * 0.02562 * 15 14 13 42 42 H 0.96990 * 120.00283 * 180.02562 * 21 20 18 43 43 H 1.08002 * 126.24924 * 359.97302 * 26 14 13 44 44 H 1.08996 * 110.38809 * 95.95620 * 27 8 7 45 45 H 1.09007 * 110.38582 * 218.33533 * 27 8 7 46 46 H 1.09003 * 110.04443 * 26.35136 * 28 2 1 47 47 H 1.08990 * 110.09793 * 264.89221 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3879 0.0000 4 6 3.4466 1.2191 -0.5428 5 6 3.2830 0.1077 -1.5848 6 6 4.5026 -0.8278 -1.6078 7 6 4.4817 -1.3817 -3.0508 8 7 3.6933 -0.4461 -3.8680 9 6 3.4260 -0.5846 -5.1817 10 8 2.7626 0.2527 -5.7576 11 6 3.9461 -1.7683 -5.9285 12 8 4.6101 -2.6057 -5.3525 13 7 3.6784 -1.9072 -7.2421 14 6 4.1675 -3.0191 -7.9440 15 6 4.9459 -4.0615 -7.4074 16 7 5.2086 -4.9148 -8.3644 17 7 4.6071 -4.4571 -9.5435 18 6 4.6493 -5.0795 -10.7665 19 1 4.1498 -4.6366 -11.6154 20 6 5.3348 -6.2799 -10.9121 21 7 5.9424 -6.8183 -9.8803 22 14 5.3916 -7.1273 -12.5759 23 1 6.0308 -6.2264 -13.5686 24 1 6.1799 -8.3810 -12.4663 25 1 4.0099 -7.4476 -13.0157 26 6 3.9744 -3.2814 -9.2622 27 6 3.2483 0.6733 -3.0133 28 6 2.0005 -0.6387 -1.2284 29 1 -0.3633 -1.0266 -0.0454 30 1 -0.3634 0.4740 0.9118 31 1 -0.3633 0.5526 -0.8664 32 1 1.4148 2.0246 -0.6619 33 1 2.0165 1.7937 1.0115 34 1 4.1246 0.9077 0.2519 35 1 3.7942 2.1402 -1.0108 36 1 4.3851 -1.6334 -0.8831 37 1 5.4206 -0.2703 -1.4215 38 1 4.0160 -2.3671 -3.0626 39 1 5.4986 -1.4457 -3.4379 40 1 3.1481 -1.2379 -7.7025 41 1 5.2703 -4.1438 -6.3806 42 1 6.4210 -7.6558 -9.9820 43 1 3.4171 -2.6733 -9.9594 44 1 3.9315 1.5174 -3.1068 45 1 2.2342 0.9733 -3.2778 46 1 1.2778 -0.5480 -2.0393 47 1 2.2198 -1.6894 -1.0393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261241790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:16 Heat of formation + Delta-G solvation = 39.429177 kcal Electronic energy + Delta-G solvation = -30276.671369 eV Core-core repulsion = 26075.994023 eV Total energy + Delta-G solvation = -4200.677346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.07571 -40.08003 -39.25635 -37.84669 -36.82646 -34.40159 -33.24527 -32.76686 -30.51394 -30.33064 -29.18148 -28.12342 -27.36056 -25.71653 -24.83309 -23.33678 -22.60965 -21.60303 -21.02632 -19.76455 -19.72560 -19.38810 -17.65387 -17.36565 -16.57034 -16.29222 -16.01629 -15.73431 -15.50715 -15.11728 -14.85015 -14.57878 -14.44676 -14.08576 -13.85839 -13.62538 -13.51630 -13.29497 -13.09962 -13.01179 -12.94027 -12.45740 -12.30526 -12.04499 -11.81181 -11.73802 -11.72884 -11.57198 -11.28244 -11.27734 -11.06522 -10.94498 -10.87813 -10.78063 -10.58680 -10.28549 -9.23291 -9.07145 -8.90623 -8.87782 -8.75901 -8.13609 -6.78332 -6.60960 -4.28371 1.65209 2.44399 2.93749 3.02950 3.06764 3.31261 3.59432 3.67184 3.70401 3.83645 4.03609 4.09866 4.24062 4.36532 4.55364 4.61462 4.77688 4.86356 4.97512 4.99797 5.00861 5.03237 5.07255 5.19187 5.26930 5.36748 5.38277 5.47833 5.52240 5.53626 5.62989 5.70231 5.75251 5.83469 5.94633 6.08843 6.19739 6.35318 6.44396 6.61253 6.75976 6.87826 6.92404 7.15597 7.19541 7.67609 7.81637 8.09820 8.17676 8.48591 8.69049 9.30475 9.59201 10.34778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.001937 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.537044 B =14453.006846 C =14613.493925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.031 3.969 4 C -0.107 4.107 5 C -0.085 4.085 6 C -0.119 4.119 7 C 0.107 3.893 8 N -0.594 5.594 9 C 0.528 3.472 10 O -0.532 6.532 11 C 0.486 3.514 12 O -0.517 6.517 13 N -0.584 5.584 14 C -0.068 4.068 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.078 4.078 27 C 0.120 3.880 28 C 0.051 3.949 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.098 14.351 17.302 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.096 4.096 4 C -0.145 4.145 5 C -0.086 4.086 6 C -0.157 4.157 7 C -0.015 4.015 8 N -0.329 5.329 9 C 0.312 3.688 10 O -0.408 6.408 11 C 0.267 3.733 12 O -0.394 6.394 13 N -0.227 5.227 14 C -0.174 4.174 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.002 4.002 28 C -0.077 4.077 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.243 0.757 41 H 0.194 0.806 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.125 12.581 17.534 22.181 hybrid contribution -1.071 1.249 -1.551 2.261 sum -6.196 13.830 15.983 22.026 Atomic orbital electron populations 1.22527 0.87765 1.02256 1.00885 1.64901 1.08215 1.14814 1.36653 1.23357 0.95032 0.90026 1.01232 1.22359 0.96965 0.97553 0.97667 1.21660 0.96221 0.96476 0.94284 1.22697 0.97334 0.99221 0.96481 1.22290 0.96999 0.93094 0.89130 1.48290 1.52303 1.24599 1.07699 1.20048 0.80695 0.86802 0.81266 1.90731 1.39128 1.43663 1.67321 1.19517 0.83788 0.86937 0.83056 1.90641 1.38835 1.42453 1.67512 1.42134 1.49768 1.23077 1.07721 1.17246 1.14322 0.94148 0.91694 1.24137 1.02514 0.93374 1.00189 1.78260 1.20384 1.21083 0.89406 1.44550 1.27383 1.11181 1.07370 1.19872 1.35603 1.05521 0.84424 0.86498 1.25665 0.95180 0.96676 0.99618 1.70195 1.23566 1.16192 1.29451 0.85872 0.79146 0.78746 0.80272 1.19100 1.20087 1.19093 1.21302 1.11250 0.95113 0.95275 1.22315 1.00961 0.89278 0.87688 1.22777 0.94439 0.99479 0.91003 0.91185 0.91225 0.95311 0.93572 0.89843 0.89756 0.90365 0.89194 0.90112 0.89925 0.89960 0.75663 0.80559 0.91297 0.83384 0.90640 0.90326 0.93192 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.40 60.06 0.56 0.67 16 2 N -0.52 -4.29 5.57 -238.93 -1.33 -5.62 16 3 C 0.03 0.21 6.59 -1.65 -0.01 0.20 16 4 C -0.11 -0.66 6.19 -25.42 -0.16 -0.82 16 5 C -0.09 -0.67 0.74 -153.86 -0.11 -0.79 16 6 C -0.12 -0.94 5.74 -25.53 -0.15 -1.08 16 7 C 0.11 1.21 5.45 -2.87 -0.02 1.19 16 8 N -0.59 -7.61 3.34 -171.37 -0.57 -8.19 16 9 C 0.53 8.43 7.91 -11.65 -0.09 8.34 16 10 O -0.53 -9.23 16.75 5.48 0.09 -9.13 16 11 C 0.49 8.93 7.82 -11.65 -0.09 8.84 16 12 O -0.52 -10.26 11.26 5.45 0.06 -10.20 16 13 N -0.58 -11.18 5.45 -10.45 -0.06 -11.24 16 14 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 15 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 16 N -0.26 -7.45 10.39 30.81 0.32 -7.13 16 17 N -0.14 -3.75 3.73 -11.40 -0.04 -3.80 16 18 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 19 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.13 11.81 55.50 0.66 -20.48 16 22 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 27 C 0.12 1.19 5.78 -3.03 -0.02 1.17 16 28 C 0.05 0.44 6.02 -3.25 -0.02 0.42 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.03 0.21 8.01 -51.93 -0.42 -0.21 16 32 H 0.05 0.31 7.95 -51.93 -0.41 -0.11 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 35 H 0.08 0.41 7.60 -51.93 -0.39 0.01 16 36 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 37 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 38 H 0.08 1.03 7.58 -51.93 -0.39 0.63 16 39 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 40 H 0.41 6.81 8.29 -40.82 -0.34 6.48 16 41 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 42 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 44 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 45 H 0.08 0.84 7.67 -51.92 -0.40 0.44 16 46 H 0.05 0.50 7.13 -51.93 -0.37 0.12 16 47 H 0.09 0.79 7.50 -51.93 -0.39 0.40 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -32.43 381.18 -8.14 -40.58 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.69 Total: 10.20 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.30 Total: 5.60 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -1.03 Total: -56.44 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.15 Total: -19.33 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.43 -8.14 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261241790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.006 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds