Wall clock time and date at job start Wed Apr 1 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48664 * 111.00325 * 2 1 4 4 C 1.55250 * 103.41852 * 201.06460 * 3 2 1 5 5 C 1.53221 * 102.54889 * 36.23518 * 4 3 2 6 6 C 1.53726 * 111.52705 * 216.49542 * 5 4 3 7 7 C 1.54576 * 102.78789 * 206.05336 * 6 5 4 8 8 N 1.47138 * 107.32957 * 20.89840 * 7 6 5 9 9 C 1.34769 * 125.61244 * 180.90515 * 8 7 6 10 10 O 1.21364 * 120.00437 * 180.02562 * 9 8 7 11 11 C 1.49314 * 119.99699 * 0.02562 * 9 8 7 12 12 O 1.21405 * 119.99899 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99989 * 179.97438 * 11 9 8 14 14 C 1.40294 * 120.00100 * 179.97438 * 13 11 9 15 15 C 1.40723 * 126.09847 * 0.02562 * 14 13 11 16 16 N 1.30880 * 108.37169 * 179.97438 * 15 14 13 17 17 N 1.40056 * 108.43732 * 359.76147 * 16 15 14 18 18 C 1.37294 * 126.05393 * 180.28502 * 17 16 15 19 19 H 1.08001 * 120.00237 * 180.11841 * 18 17 16 20 20 C 1.39000 * 120.00177 * 0.12442 * 18 17 16 21 21 N 1.31289 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00379 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46837 * 59.99751 * 22 20 18 24 24 H 1.48504 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47062 * 299.99819 * 22 20 18 26 26 C 1.35790 * 126.09925 * 180.02562 * 14 13 11 27 27 C 1.47706 * 108.77907 * 1.17072 * 8 7 6 28 28 C 1.48302 * 111.00164 * 242.52778 * 2 1 3 29 29 H 1.08997 * 109.46924 * 177.46807 * 1 2 3 30 30 H 1.09000 * 109.47272 * 297.46974 * 1 2 3 31 31 H 1.08998 * 109.47077 * 57.46938 * 1 2 3 32 32 H 1.09003 * 110.62732 * 319.54899 * 3 2 1 33 33 H 1.09000 * 110.63247 * 82.57740 * 3 2 1 34 34 H 1.09000 * 110.79475 * 277.97268 * 4 3 2 35 35 H 1.09004 * 110.79432 * 154.49849 * 4 3 2 36 36 H 1.09000 * 110.74934 * 87.72831 * 6 5 4 37 37 H 1.09003 * 110.75225 * 324.38210 * 6 5 4 38 38 H 1.08996 * 109.87347 * 261.46397 * 7 6 5 39 39 H 1.08999 * 109.87417 * 140.33387 * 7 6 5 40 40 H 0.97007 * 120.00081 * 0.02562 * 13 11 9 41 41 H 1.07996 * 125.81249 * 0.02562 * 15 14 13 42 42 H 0.96990 * 120.00283 * 180.02562 * 21 20 18 43 43 H 1.08002 * 126.24924 * 359.97302 * 26 14 13 44 44 H 1.08996 * 110.38809 * 95.95620 * 27 8 7 45 45 H 1.09007 * 110.38582 * 218.33533 * 27 8 7 46 46 H 1.09003 * 110.04443 * 26.35136 * 28 2 1 47 47 H 1.08990 * 110.09793 * 264.89221 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3879 0.0000 4 6 3.4466 1.2191 -0.5428 5 6 3.2830 0.1077 -1.5848 6 6 4.5026 -0.8278 -1.6078 7 6 4.4817 -1.3817 -3.0508 8 7 3.6933 -0.4461 -3.8680 9 6 3.4260 -0.5846 -5.1817 10 8 2.7626 0.2527 -5.7576 11 6 3.9461 -1.7683 -5.9285 12 8 4.6101 -2.6057 -5.3525 13 7 3.6784 -1.9072 -7.2421 14 6 4.1675 -3.0191 -7.9440 15 6 4.9459 -4.0615 -7.4074 16 7 5.2086 -4.9148 -8.3644 17 7 4.6071 -4.4571 -9.5435 18 6 4.6493 -5.0795 -10.7665 19 1 4.1498 -4.6366 -11.6154 20 6 5.3348 -6.2799 -10.9121 21 7 5.9424 -6.8183 -9.8803 22 14 5.3916 -7.1273 -12.5759 23 1 6.0308 -6.2264 -13.5686 24 1 6.1799 -8.3810 -12.4663 25 1 4.0099 -7.4476 -13.0157 26 6 3.9744 -3.2814 -9.2622 27 6 3.2483 0.6733 -3.0133 28 6 2.0005 -0.6387 -1.2284 29 1 -0.3633 -1.0266 -0.0454 30 1 -0.3634 0.4740 0.9118 31 1 -0.3633 0.5526 -0.8664 32 1 1.4148 2.0246 -0.6619 33 1 2.0165 1.7937 1.0115 34 1 4.1246 0.9077 0.2519 35 1 3.7942 2.1402 -1.0108 36 1 4.3851 -1.6334 -0.8831 37 1 5.4206 -0.2703 -1.4215 38 1 4.0160 -2.3671 -3.0626 39 1 5.4986 -1.4457 -3.4379 40 1 3.1481 -1.2379 -7.7025 41 1 5.2703 -4.1438 -6.3806 42 1 6.4210 -7.6558 -9.9820 43 1 3.4171 -2.6733 -9.9594 44 1 3.9315 1.5174 -3.1068 45 1 2.2342 0.9733 -3.2778 46 1 1.2778 -0.5480 -2.0393 47 1 2.2198 -1.6894 -1.0393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261241790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:14 Heat of formation + Delta-G solvation = 15.659099 kcal Electronic energy + Delta-G solvation = -30277.702117 eV Core-core repulsion = 26075.994023 eV Total energy + Delta-G solvation = -4201.708094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.22103 -41.57816 -40.62427 -39.26471 -37.74979 -36.06619 -35.02890 -33.64585 -32.30511 -31.24918 -30.05338 -29.78747 -28.25867 -27.14825 -26.16729 -24.38801 -23.63628 -22.89856 -22.18914 -21.43187 -20.97341 -20.44828 -19.36539 -18.68187 -17.84248 -17.46424 -17.40783 -16.84780 -16.74122 -16.38526 -16.05825 -15.92023 -15.48455 -15.32044 -15.18178 -14.89366 -14.81008 -14.47552 -14.19717 -14.13398 -13.89983 -13.51306 -13.38805 -13.21634 -13.12849 -12.93477 -12.89105 -12.67832 -12.46629 -12.41113 -12.27566 -12.13754 -11.97340 -11.72955 -11.60314 -11.49402 -11.06261 -10.88324 -10.52172 -10.14979 -9.93088 -9.42925 -8.63262 -8.49493 -6.27355 0.24526 1.17657 1.29457 1.40740 1.56514 1.71293 2.00715 2.10329 2.42393 2.51083 2.81969 3.01088 3.06793 3.28554 3.43184 3.48891 3.55180 3.94811 4.12726 4.25349 4.30860 4.37592 4.38330 4.45481 4.50419 4.50918 4.57612 4.69266 4.72266 4.80295 4.92372 4.93837 4.95429 4.97586 4.98132 5.02350 5.05702 5.12474 5.20660 5.25608 5.27184 5.31008 5.84670 5.89787 5.99816 6.02751 6.18243 6.35801 6.63162 6.71865 7.04701 7.40028 7.61827 8.49483 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.001937 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.537044 B =14453.006846 C =14613.493925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.029 3.971 4 C -0.100 4.100 5 C -0.077 4.077 6 C -0.106 4.106 7 C 0.103 3.897 8 N -0.586 5.586 9 C 0.531 3.469 10 O -0.547 6.547 11 C 0.487 3.513 12 O -0.532 6.532 13 N -0.584 5.584 14 C -0.055 4.055 15 C -0.047 4.047 16 N -0.307 5.307 17 N -0.163 5.163 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.020 2.980 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.254 1.254 26 C -0.076 4.076 27 C 0.117 3.883 28 C 0.051 3.949 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.422 0.578 41 H 0.177 0.823 42 H 0.278 0.722 43 H 0.187 0.813 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 16.236 17.788 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.255 5.255 3 C -0.098 4.098 4 C -0.138 4.138 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.019 4.019 8 N -0.319 5.319 9 C 0.314 3.686 10 O -0.426 6.426 11 C 0.269 3.731 12 O -0.410 6.410 13 N -0.229 5.229 14 C -0.162 4.162 15 C -0.222 4.222 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.178 1.178 24 H -0.201 1.201 25 H -0.178 1.178 26 C -0.227 4.227 27 C -0.004 4.004 28 C -0.077 4.077 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.259 0.741 41 H 0.193 0.807 42 H 0.088 0.912 43 H 0.204 0.796 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.600 14.514 18.071 23.845 hybrid contribution -0.984 0.779 -1.513 1.965 sum -6.584 15.293 16.559 23.482 Atomic orbital electron populations 1.22545 0.87407 1.02159 1.01353 1.64922 1.08706 1.15916 1.35984 1.23443 0.95220 0.89111 1.02042 1.22378 0.96902 0.97313 0.97186 1.21617 0.95711 0.97010 0.93527 1.22682 0.98215 0.99607 0.93899 1.22387 0.95879 0.92524 0.91153 1.48403 1.51162 1.25502 1.06850 1.19452 0.81051 0.85797 0.82274 1.90726 1.40108 1.43806 1.67937 1.20104 0.82813 0.87397 0.82806 1.90634 1.39193 1.43278 1.67865 1.42075 1.50303 1.22463 1.08072 1.17283 1.12810 0.94336 0.91745 1.24242 1.03624 0.94330 0.99997 1.78156 1.22154 1.22884 0.90684 1.44829 1.28408 1.12433 1.07389 1.20611 1.36536 1.06434 0.84891 0.84156 1.26888 0.93976 0.96984 1.03891 1.70366 1.25135 1.16943 1.32345 0.84645 0.79622 0.77218 0.74691 1.17769 1.20147 1.17781 1.21985 1.10299 0.94343 0.96097 1.22579 1.00937 0.88773 0.88108 1.22729 0.94606 0.99447 0.90923 0.91576 0.89998 0.95636 0.93606 0.88630 0.88633 0.88807 0.88132 0.88052 0.91492 0.90929 0.74101 0.80663 0.91203 0.79627 0.88844 0.90998 0.94837 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.40 127.69 1.20 1.39 16 2 N -0.53 -7.82 5.57 -909.85 -5.07 -12.89 16 3 C 0.03 0.31 6.59 86.73 0.57 0.88 16 4 C -0.10 -0.90 6.19 31.44 0.19 -0.70 16 5 C -0.08 -1.05 0.74 -51.76 -0.04 -1.09 16 6 C -0.11 -1.43 5.74 31.38 0.18 -1.25 16 7 C 0.10 2.24 5.45 86.79 0.47 2.71 16 8 N -0.59 -14.48 3.34 -814.45 -2.72 -17.19 16 9 C 0.53 16.69 7.91 87.23 0.69 17.38 16 10 O -0.55 -18.51 16.75 -3.29 -0.06 -18.56 16 11 C 0.49 17.93 7.82 87.23 0.68 18.62 16 12 O -0.53 -21.53 11.26 -3.42 -0.04 -21.57 16 13 N -0.58 -22.21 5.45 -305.32 -1.66 -23.87 16 14 C -0.06 -2.59 6.90 37.83 0.26 -2.33 16 15 C -0.05 -2.48 10.85 85.44 0.93 -1.55 16 16 N -0.31 -18.24 10.39 -56.43 -0.59 -18.83 16 17 N -0.16 -9.00 3.73 -189.98 -0.71 -9.70 16 18 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 19 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 20 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 21 N -0.82 -46.68 11.81 21.66 0.26 -46.43 16 22 Si 1.02 38.16 29.55 68.60 2.03 40.18 16 23 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.28 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 26 C -0.08 -3.58 11.50 83.41 0.96 -2.63 16 27 C 0.12 2.10 5.78 86.38 0.50 2.60 16 28 C 0.05 0.84 6.02 85.90 0.52 1.35 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.03 0.35 8.01 -2.39 -0.02 0.33 16 32 H 0.05 0.50 7.95 -2.39 -0.02 0.48 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.72 7.93 -2.39 -0.02 0.70 16 35 H 0.09 0.60 7.60 -2.38 -0.02 0.59 16 36 H 0.10 1.21 7.72 -2.39 -0.02 1.19 16 37 H 0.10 1.02 8.04 -2.39 -0.02 1.00 16 38 H 0.07 1.68 7.58 -2.39 -0.02 1.67 16 39 H 0.07 1.75 7.68 -2.39 -0.02 1.73 16 40 H 0.42 13.69 8.29 -92.70 -0.77 12.92 16 41 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 42 H 0.28 14.54 8.31 -92.72 -0.77 13.77 16 43 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 44 H 0.09 1.41 7.75 -2.39 -0.02 1.39 16 45 H 0.07 1.43 7.67 -2.38 -0.02 1.42 16 46 H 0.03 0.65 7.13 -2.39 -0.02 0.64 16 47 H 0.08 1.41 7.50 -2.39 -0.02 1.39 16 Total: -1.00 -72.83 381.18 0.13 -72.70 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.24 Total: 38.32 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 8.44 Total: 17.84 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -10.49 Total: -128.91 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.09 Total: -40.13 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -72.83 0.13 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261241790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.359 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds