Wall clock time and date at job start Wed Apr 1 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 119.99944 * 2 1 4 4 H 1.08000 * 120.00199 * 177.37751 * 3 2 1 5 5 C 1.38815 * 119.99953 * 357.37238 * 3 2 1 6 6 N 1.31619 * 119.99774 * 33.74919 * 5 3 2 7 7 Si 1.86797 * 120.00187 * 213.74847 * 5 3 2 8 8 H 1.48499 * 109.47174 * 94.99849 * 7 5 3 9 9 H 1.48504 * 109.47271 * 214.99952 * 7 5 3 10 10 H 1.48503 * 109.47129 * 335.00102 * 7 5 3 11 11 C 1.46503 * 120.00388 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47027 * 269.99472 * 11 2 1 13 13 O 1.42900 * 109.46677 * 65.00254 * 12 11 2 14 14 C 1.42901 * 113.99811 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.47335 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46813 * 64.99779 * 15 14 13 17 17 C 1.46498 * 119.99996 * 270.00396 * 16 15 14 18 18 C 1.34772 * 119.99773 * 90.00058 * 16 15 14 19 19 O 1.21538 * 120.00320 * 2.23123 * 18 16 15 20 20 C 1.47978 * 119.99938 * 182.23052 * 18 16 15 21 21 C 1.39731 * 119.42933 * 172.41245 * 20 18 16 22 22 C 1.36989 * 119.60084 * 179.97438 * 21 20 18 23 23 C 1.39896 * 118.35662 * 0.02562 * 22 21 20 24 24 N 1.35440 * 133.80839 * 180.02562 * 23 22 21 25 25 C 1.30218 * 109.57449 * 180.02562 * 24 23 22 26 26 N 1.35987 * 110.17879 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.29511 * 180.02562 * 26 25 24 28 28 C 1.37943 * 107.41939 * 0.02562 * 26 25 24 29 29 N 1.31880 * 133.82918 * 180.02562 * 28 26 25 30 30 H 1.09008 * 109.46677 * 275.00832 * 1 2 3 31 31 H 1.08996 * 109.47781 * 35.00845 * 1 2 3 32 32 H 1.08998 * 109.46723 * 155.01450 * 1 2 3 33 33 H 0.97002 * 120.00263 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47106 * 149.99643 * 11 2 1 35 35 H 1.08995 * 109.46604 * 29.99766 * 11 2 1 36 36 H 1.08995 * 109.47225 * 305.00129 * 12 11 2 37 37 H 1.08995 * 109.46772 * 184.99269 * 12 11 2 38 38 H 1.08995 * 109.47505 * 59.99705 * 14 13 12 39 39 H 1.08999 * 109.47301 * 299.99867 * 14 13 12 40 40 H 1.09000 * 109.46666 * 305.00612 * 15 14 13 41 41 H 1.08995 * 109.47449 * 185.00044 * 15 14 13 42 42 H 1.09007 * 109.46950 * 263.59549 * 17 16 15 43 43 H 1.09000 * 109.47312 * 23.59306 * 17 16 15 44 44 H 1.09003 * 109.47159 * 143.59812 * 17 16 15 45 45 H 1.08000 * 120.19793 * 359.97438 * 21 20 18 46 46 H 1.07998 * 120.81999 * 179.72958 * 22 21 20 47 47 H 1.07994 * 124.90940 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2288 1.1865 0.0428 5 6 1.4566 2.3875 -0.0551 6 7 0.2826 2.4974 0.5296 7 14 2.1903 3.8482 -0.9591 8 1 1.6621 3.8880 -2.3464 9 1 1.8231 5.1023 -0.2536 10 1 3.6689 3.7158 -0.9961 11 6 2.1976 -1.2687 -0.0006 12 6 2.4527 -1.7109 1.4418 13 8 1.2062 -1.9944 2.0805 14 6 1.3327 -2.4189 3.4391 15 6 -0.0564 -2.6923 4.0195 16 7 -0.6659 -3.8231 3.3152 17 6 -1.4802 -3.5889 2.1201 18 6 -0.4775 -5.0789 3.7668 19 8 0.1642 -5.2702 4.7811 20 6 -1.0519 -6.2249 3.0276 21 6 -0.7188 -7.5264 3.4120 22 6 -1.2489 -8.5899 2.7305 23 6 -2.1139 -8.3300 1.6622 24 7 -2.7976 -9.1161 0.7967 25 6 -3.4744 -8.3703 -0.0287 26 7 -3.2707 -7.0555 0.2522 27 1 -3.6610 -6.3010 -0.2164 28 6 -2.4071 -6.9916 1.3259 29 7 -1.8732 -5.9990 2.0107 30 1 -0.3633 0.0897 1.0238 31 1 -0.3634 0.8417 -0.5895 32 1 -0.3633 -0.9315 -0.4341 33 1 -0.2015 3.3371 0.4915 34 1 3.1500 -1.1381 -0.5144 35 1 1.6085 -2.0281 -0.5147 36 1 2.9644 -0.9138 1.9811 37 1 3.0733 -2.6069 1.4426 38 1 1.8214 -1.6369 4.0202 39 1 1.9301 -3.3297 3.4811 40 1 -0.6818 -1.8081 3.8968 41 1 0.0330 -2.9299 5.0795 42 1 -2.5337 -3.5584 2.3985 43 1 -1.1964 -2.6388 1.6676 44 1 -1.3165 -4.3952 1.4052 45 1 -0.0474 -7.6928 4.2414 46 1 -1.0015 -9.6038 3.0081 47 1 -4.1062 -8.7423 -0.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264107476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:52 Heat of formation + Delta-G solvation = 65.466451 kcal Electronic energy + Delta-G solvation = -30608.635899 eV Core-core repulsion = 26409.087614 eV Total energy + Delta-G solvation = -4199.548285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.74469 -40.27271 -38.24370 -37.44830 -35.76198 -35.03446 -34.07555 -31.82375 -31.52849 -30.70887 -29.51532 -27.97831 -26.51083 -25.76993 -24.96936 -23.83717 -22.99783 -22.50938 -22.00033 -20.34615 -19.96141 -19.03306 -17.84965 -17.33156 -16.77626 -16.38092 -16.25453 -15.86165 -15.52058 -15.26765 -15.21346 -14.98031 -14.49205 -14.01007 -13.95074 -13.80024 -13.41117 -13.22508 -12.94446 -12.86782 -12.72677 -12.35012 -12.19556 -11.97139 -11.62934 -11.54284 -11.45116 -11.16458 -11.01500 -10.88228 -10.68574 -10.49293 -10.31695 -10.09800 -9.99763 -9.74436 -9.34889 -9.22659 -8.96951 -8.92924 -8.53231 -8.20553 -6.89849 -5.81060 -2.93939 0.10403 0.86308 2.08580 2.15163 2.74732 2.94616 3.42953 3.52433 3.52579 3.57719 3.63886 3.93319 4.18135 4.25264 4.52737 4.57256 4.66711 4.71164 5.20263 5.29348 5.30260 5.34426 5.37922 5.54350 5.59890 5.63169 5.68344 5.72874 5.82049 5.86002 5.96153 6.07111 6.10814 6.17457 6.21518 6.39280 6.53184 6.54487 6.65866 6.75395 6.86658 7.21285 7.28686 7.40196 7.56740 7.72887 7.84760 7.90709 8.06196 8.34910 9.24974 9.94502 10.41104 11.28491 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.002432 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.179870 B =11508.299305 C =12516.994633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.599 5.599 3 C -0.260 4.260 4 H 0.075 0.925 5 C 0.006 3.994 6 N -0.886 5.886 7 Si 0.878 3.122 8 H -0.289 1.289 9 H -0.295 1.295 10 H -0.281 1.281 11 C 0.156 3.844 12 C 0.041 3.959 13 O -0.367 6.367 14 C 0.047 3.953 15 C 0.117 3.883 16 N -0.579 5.579 17 C 0.080 3.920 18 C 0.567 3.433 19 O -0.539 6.539 20 C 0.123 3.877 21 C -0.124 4.124 22 C -0.028 4.028 23 C 0.021 3.979 24 N -0.493 5.493 25 C 0.286 3.714 26 N -0.586 5.586 27 H 0.433 0.567 28 C 0.229 3.771 29 N -0.438 5.438 30 H 0.016 0.984 31 H 0.057 0.943 32 H -0.004 1.004 33 H 0.252 0.748 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -22.390 1.871 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.322 5.322 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.192 4.192 6 N -0.530 5.530 7 Si 0.707 3.293 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.206 1.206 11 C 0.028 3.972 12 C -0.039 4.039 13 O -0.286 6.286 14 C -0.031 4.031 15 C -0.005 4.005 16 N -0.309 5.309 17 C -0.062 4.062 18 C 0.353 3.647 19 O -0.416 6.416 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.055 4.055 23 C -0.100 4.100 24 N -0.213 5.213 25 C -0.002 4.002 26 N -0.201 5.201 27 H 0.273 0.727 28 C -0.009 4.009 29 N -0.154 5.154 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.175 0.825 46 H 0.167 0.833 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.367 -22.354 2.098 23.960 hybrid contribution 0.501 1.350 -0.442 1.506 sum -7.866 -21.004 1.656 22.489 Atomic orbital electron populations 1.20897 0.82236 0.95887 0.98909 1.44057 1.02209 1.00412 1.85509 1.19190 0.90856 0.83601 1.45169 0.90728 1.24657 0.96678 0.97085 1.00807 1.70351 1.16292 1.25281 1.41096 0.86609 0.78826 0.82675 0.81179 1.21682 1.22219 1.20599 1.20804 0.96487 0.88428 0.91480 1.23518 0.85408 0.96889 0.98037 1.87944 1.30173 1.87231 1.23276 1.22780 0.96649 0.98153 0.85505 1.21670 0.93786 0.88559 0.96486 1.47670 1.49239 1.05249 1.28719 1.22384 0.93205 1.03980 0.86675 1.17780 0.80381 0.82364 0.84140 1.90782 1.41580 1.84652 1.24616 1.20976 0.95278 0.93925 0.92305 1.21553 1.00965 0.90945 1.01265 1.20459 0.93065 1.00428 0.91540 1.19899 1.01022 0.90374 0.98724 1.70460 1.11869 1.32473 1.06496 1.25580 0.97877 0.77973 0.98764 1.42902 1.39592 1.10267 1.27307 0.72691 1.19131 0.96679 0.92007 0.93048 1.67064 1.09640 1.32742 1.05978 0.96587 0.92482 0.98531 0.93842 0.92168 0.93779 0.93595 0.95730 0.92714 0.93963 0.88954 0.88629 0.93220 0.90226 0.88395 0.82519 0.83341 0.75686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.11 8.84 59.84 0.53 4.64 16 2 N -0.60 -15.10 2.90 -181.12 -0.52 -15.62 16 3 C -0.26 -7.16 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 2.01 8.02 -52.49 -0.42 1.59 16 5 C 0.01 0.17 4.84 -17.43 -0.08 0.09 16 6 N -0.89 -25.80 10.80 55.49 0.60 -25.20 16 7 Si 0.88 21.66 29.66 -169.99 -5.04 16.62 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.16 3.21 6.11 -4.04 -0.02 3.19 16 12 C 0.04 0.78 6.28 37.16 0.23 1.01 16 13 O -0.37 -6.95 8.85 -35.23 -0.31 -7.26 16 14 C 0.05 0.76 6.28 37.16 0.23 0.99 16 15 C 0.12 1.68 5.80 -4.03 -0.02 1.65 16 16 N -0.58 -8.27 2.84 -182.64 -0.52 -8.79 16 17 C 0.08 1.07 9.05 59.85 0.54 1.61 16 18 C 0.57 8.24 7.65 -12.27 -0.09 8.14 16 19 O -0.54 -8.78 15.88 5.33 0.08 -8.70 16 20 C 0.12 1.56 6.62 -82.96 -0.55 1.01 16 21 C -0.12 -1.31 9.55 -39.48 -0.38 -1.69 16 22 C -0.03 -0.26 10.16 -39.41 -0.40 -0.67 16 23 C 0.02 0.23 7.25 -84.57 -0.61 -0.38 16 24 N -0.49 -4.74 11.27 -11.93 -0.13 -4.88 16 25 C 0.29 1.64 12.96 -89.74 -1.16 0.47 16 26 N -0.59 -3.88 6.22 -13.21 -0.08 -3.96 16 27 H 0.43 1.64 8.96 -40.82 -0.37 1.27 16 28 C 0.23 2.41 8.46 -155.74 -1.32 1.10 16 29 N -0.44 -5.24 6.03 -8.82 -0.05 -5.29 16 30 H 0.02 0.42 8.04 -51.92 -0.42 0.01 16 31 H 0.06 1.55 6.18 -51.93 -0.32 1.23 16 32 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 35 H 0.04 0.85 7.86 -51.93 -0.41 0.44 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 41 H 0.10 1.28 7.39 -51.93 -0.38 0.90 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.21 7.25 -51.93 -0.38 0.84 16 44 H 0.10 1.30 5.27 -52.18 -0.27 1.03 16 45 H 0.16 1.48 7.63 -52.49 -0.40 1.08 16 46 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.23 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -35.45 390.94 -10.05 -45.50 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.71 Total: -2.18 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -3.26 Total: 13.86 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.71 Total: -63.74 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.23 Total: -15.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.45 -10.05 -45.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264107476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.970 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds