Wall clock time and date at job start Wed Apr 1 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 119.99944 * 2 1 4 4 H 1.08000 * 120.00199 * 177.37751 * 3 2 1 5 5 C 1.38815 * 119.99953 * 357.37238 * 3 2 1 6 6 N 1.31619 * 119.99774 * 33.74919 * 5 3 2 7 7 Si 1.86797 * 120.00187 * 213.74847 * 5 3 2 8 8 H 1.48499 * 109.47174 * 94.99849 * 7 5 3 9 9 H 1.48504 * 109.47271 * 214.99952 * 7 5 3 10 10 H 1.48503 * 109.47129 * 335.00102 * 7 5 3 11 11 C 1.46503 * 120.00388 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47027 * 269.99472 * 11 2 1 13 13 O 1.42900 * 109.46677 * 65.00254 * 12 11 2 14 14 C 1.42901 * 113.99811 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.47335 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46813 * 64.99779 * 15 14 13 17 17 C 1.46498 * 119.99996 * 270.00396 * 16 15 14 18 18 C 1.34772 * 119.99773 * 90.00058 * 16 15 14 19 19 O 1.21538 * 120.00320 * 2.23123 * 18 16 15 20 20 C 1.47978 * 119.99938 * 182.23052 * 18 16 15 21 21 C 1.39731 * 119.42933 * 172.41245 * 20 18 16 22 22 C 1.36989 * 119.60084 * 179.97438 * 21 20 18 23 23 C 1.39896 * 118.35662 * 0.02562 * 22 21 20 24 24 N 1.35440 * 133.80839 * 180.02562 * 23 22 21 25 25 C 1.30218 * 109.57449 * 180.02562 * 24 23 22 26 26 N 1.35987 * 110.17879 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.29511 * 180.02562 * 26 25 24 28 28 C 1.37943 * 107.41939 * 0.02562 * 26 25 24 29 29 N 1.31880 * 133.82918 * 180.02562 * 28 26 25 30 30 H 1.09008 * 109.46677 * 275.00832 * 1 2 3 31 31 H 1.08996 * 109.47781 * 35.00845 * 1 2 3 32 32 H 1.08998 * 109.46723 * 155.01450 * 1 2 3 33 33 H 0.97002 * 120.00263 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47106 * 149.99643 * 11 2 1 35 35 H 1.08995 * 109.46604 * 29.99766 * 11 2 1 36 36 H 1.08995 * 109.47225 * 305.00129 * 12 11 2 37 37 H 1.08995 * 109.46772 * 184.99269 * 12 11 2 38 38 H 1.08995 * 109.47505 * 59.99705 * 14 13 12 39 39 H 1.08999 * 109.47301 * 299.99867 * 14 13 12 40 40 H 1.09000 * 109.46666 * 305.00612 * 15 14 13 41 41 H 1.08995 * 109.47449 * 185.00044 * 15 14 13 42 42 H 1.09007 * 109.46950 * 263.59549 * 17 16 15 43 43 H 1.09000 * 109.47312 * 23.59306 * 17 16 15 44 44 H 1.09003 * 109.47159 * 143.59812 * 17 16 15 45 45 H 1.08000 * 120.19793 * 359.97438 * 21 20 18 46 46 H 1.07998 * 120.81999 * 179.72958 * 22 21 20 47 47 H 1.07994 * 124.90940 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2288 1.1865 0.0428 5 6 1.4566 2.3875 -0.0551 6 7 0.2826 2.4974 0.5296 7 14 2.1903 3.8482 -0.9591 8 1 1.6621 3.8880 -2.3464 9 1 1.8231 5.1023 -0.2536 10 1 3.6689 3.7158 -0.9961 11 6 2.1976 -1.2687 -0.0006 12 6 2.4527 -1.7109 1.4418 13 8 1.2062 -1.9944 2.0805 14 6 1.3327 -2.4189 3.4391 15 6 -0.0564 -2.6923 4.0195 16 7 -0.6659 -3.8231 3.3152 17 6 -1.4802 -3.5889 2.1201 18 6 -0.4775 -5.0789 3.7668 19 8 0.1642 -5.2702 4.7811 20 6 -1.0519 -6.2249 3.0276 21 6 -0.7188 -7.5264 3.4120 22 6 -1.2489 -8.5899 2.7305 23 6 -2.1139 -8.3300 1.6622 24 7 -2.7976 -9.1161 0.7967 25 6 -3.4744 -8.3703 -0.0287 26 7 -3.2707 -7.0555 0.2522 27 1 -3.6610 -6.3010 -0.2164 28 6 -2.4071 -6.9916 1.3259 29 7 -1.8732 -5.9990 2.0107 30 1 -0.3633 0.0897 1.0238 31 1 -0.3634 0.8417 -0.5895 32 1 -0.3633 -0.9315 -0.4341 33 1 -0.2015 3.3371 0.4915 34 1 3.1500 -1.1381 -0.5144 35 1 1.6085 -2.0281 -0.5147 36 1 2.9644 -0.9138 1.9811 37 1 3.0733 -2.6069 1.4426 38 1 1.8214 -1.6369 4.0202 39 1 1.9301 -3.3297 3.4811 40 1 -0.6818 -1.8081 3.8968 41 1 0.0330 -2.9299 5.0795 42 1 -2.5337 -3.5584 2.3985 43 1 -1.1964 -2.6388 1.6676 44 1 -1.3165 -4.3952 1.4052 45 1 -0.0474 -7.6928 4.2414 46 1 -1.0015 -9.6038 3.0081 47 1 -4.1062 -8.7423 -0.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264107476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:50 Heat of formation + Delta-G solvation = 43.611014 kcal Electronic energy + Delta-G solvation = -30609.583622 eV Core-core repulsion = 26409.087614 eV Total energy + Delta-G solvation = -4200.496008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.41218 -41.29371 -39.27040 -38.75335 -37.30810 -36.51204 -34.79895 -33.55295 -32.44380 -31.77714 -30.65694 -29.56048 -27.83707 -27.58317 -25.87259 -24.83582 -24.62829 -23.55215 -22.61976 -22.15217 -20.99096 -19.71007 -18.83753 -18.64641 -18.16921 -17.57928 -17.33737 -17.06647 -16.92148 -16.42160 -16.31354 -16.07009 -15.70128 -15.38848 -15.29273 -15.09735 -14.67454 -14.53847 -14.21421 -13.91397 -13.84992 -13.66338 -13.41826 -13.29526 -13.08606 -13.02574 -12.70258 -12.62521 -12.47073 -12.30814 -12.28492 -11.97715 -11.94321 -11.78211 -11.75340 -11.37462 -10.46948 -10.30512 -10.12556 -10.03650 -9.74183 -9.57006 -8.93096 -7.91903 -5.05916 -0.67077 0.10257 1.38815 1.46950 1.47254 1.51503 1.58659 1.87865 1.95300 2.54466 2.72570 2.87526 2.97537 3.20924 3.22995 3.45407 3.74274 3.75672 3.97053 4.08555 4.11500 4.20398 4.35430 4.42623 4.51241 4.52386 4.57312 4.61169 4.62862 4.65542 4.74453 4.85327 4.93268 4.93550 4.97064 5.00893 5.14066 5.22511 5.38925 5.50214 5.52608 5.64141 5.79636 6.05567 6.25328 6.27942 6.42503 6.55451 6.66969 6.97328 7.15836 7.93461 8.35926 9.17379 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.002432 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.179870 B =11508.299305 C =12516.994633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.614 5.614 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.047 4.047 6 N -0.919 5.919 7 Si 0.944 3.056 8 H -0.290 1.290 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.152 3.848 12 C 0.049 3.951 13 O -0.384 6.384 14 C 0.050 3.950 15 C 0.121 3.879 16 N -0.583 5.583 17 C 0.092 3.908 18 C 0.566 3.434 19 O -0.564 6.564 20 C 0.095 3.905 21 C -0.122 4.122 22 C -0.030 4.030 23 C 0.013 3.987 24 N -0.531 5.531 25 C 0.315 3.685 26 N -0.577 5.577 27 H 0.446 0.554 28 C 0.209 3.791 29 N -0.445 5.445 30 H -0.010 1.010 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.163 0.837 46 H 0.172 0.828 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -24.173 0.325 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.242 4.242 6 N -0.565 5.565 7 Si 0.773 3.227 8 H -0.217 1.217 9 H -0.228 1.228 10 H -0.195 1.195 11 C 0.026 3.974 12 C -0.030 4.030 13 O -0.303 6.303 14 C -0.028 4.028 15 C -0.002 4.002 16 N -0.313 5.313 17 C -0.050 4.050 18 C 0.354 3.646 19 O -0.443 6.443 20 C -0.052 4.052 21 C -0.146 4.146 22 C -0.057 4.057 23 C -0.108 4.108 24 N -0.251 5.251 25 C 0.028 3.972 26 N -0.193 5.193 27 H 0.289 0.711 28 C -0.030 4.030 29 N -0.162 5.162 30 H 0.008 0.992 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.180 0.820 46 H 0.189 0.811 47 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -8.689 -24.139 0.531 25.661 hybrid contribution 0.524 1.746 -0.035 1.824 sum -8.165 -22.393 0.496 23.840 Atomic orbital electron populations 1.20576 0.82495 0.95992 0.96949 1.44299 1.02393 1.01452 1.85595 1.19498 0.91170 0.84661 1.44215 0.90498 1.25344 0.97533 0.99721 1.01651 1.70464 1.17805 1.25737 1.42509 0.85579 0.78484 0.79289 0.79343 1.21716 1.22809 1.19493 1.21016 0.96853 0.86895 0.92685 1.23287 0.85708 0.97424 0.96603 1.87924 1.30273 1.87400 1.24710 1.22852 0.97697 0.98060 0.84192 1.21611 0.92939 0.88709 0.96904 1.47744 1.49341 1.05301 1.28903 1.22283 0.93478 1.02816 0.86404 1.18071 0.79896 0.82724 0.83902 1.90750 1.42786 1.85068 1.25699 1.20742 0.97082 0.93780 0.93569 1.21607 1.01028 0.90474 1.01469 1.20709 0.92623 1.01172 0.91157 1.20242 1.00889 0.90768 0.98941 1.70506 1.13591 1.33265 1.07753 1.26724 0.95652 0.77032 0.97758 1.43022 1.38675 1.11357 1.26242 0.71064 1.19386 0.97663 0.91823 0.94165 1.66872 1.09698 1.33574 1.06026 0.99217 0.95173 0.95821 0.94285 0.90933 0.92232 0.95710 0.92822 0.92660 0.93767 0.89264 0.87739 0.92299 0.92294 0.88064 0.81955 0.81065 0.70423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 8.84 127.77 1.13 10.41 16 2 N -0.61 -30.77 2.90 -726.93 -2.11 -32.88 16 3 C -0.27 -14.62 9.65 84.03 0.81 -13.81 16 4 H 0.08 4.10 8.02 -2.91 -0.02 4.08 16 5 C -0.05 -2.63 4.84 84.86 0.41 -2.22 16 6 N -0.92 -54.51 10.80 21.65 0.23 -54.28 16 7 Si 0.94 44.91 29.66 68.60 2.03 46.95 16 8 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 C 0.15 6.04 6.11 86.38 0.53 6.57 16 12 C 0.05 1.81 6.28 71.98 0.45 2.27 16 13 O -0.38 -14.44 8.85 -148.98 -1.32 -15.76 16 14 C 0.05 1.59 6.28 71.98 0.45 2.04 16 15 C 0.12 3.51 5.80 86.38 0.50 4.01 16 16 N -0.58 -16.80 2.84 -850.02 -2.41 -19.22 16 17 C 0.09 2.47 9.05 127.77 1.16 3.63 16 18 C 0.57 16.63 7.65 86.83 0.66 17.29 16 19 O -0.56 -18.64 15.88 -3.84 -0.06 -18.70 16 20 C 0.10 2.40 6.62 41.96 0.28 2.68 16 21 C -0.12 -2.56 9.55 22.34 0.21 -2.34 16 22 C -0.03 -0.54 10.16 22.38 0.23 -0.31 16 23 C 0.01 0.27 7.25 39.69 0.29 0.55 16 24 N -0.53 -8.90 11.27 -191.66 -2.16 -11.06 16 25 C 0.32 2.48 12.96 180.04 2.33 4.81 16 26 N -0.58 -6.13 6.22 -195.71 -1.22 -7.35 16 27 H 0.45 2.16 8.96 -92.70 -0.83 1.33 16 28 C 0.21 4.11 8.46 134.06 1.13 5.25 16 29 N -0.45 -10.41 6.03 -181.83 -1.10 -11.51 16 30 H -0.01 -0.58 8.04 -2.38 -0.02 -0.60 16 31 H 0.03 1.65 6.18 -2.39 -0.01 1.64 16 32 H 0.02 1.02 7.84 -2.39 -0.02 1.00 16 33 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.07 2.69 8.04 -2.38 -0.02 2.67 16 35 H 0.06 2.18 7.86 -2.39 -0.02 2.16 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 41 H 0.10 2.83 7.39 -2.39 -0.02 2.81 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.06 1.82 7.25 -2.39 -0.02 1.80 16 44 H 0.10 2.67 5.27 -2.88 -0.02 2.65 16 45 H 0.16 3.07 7.63 -2.91 -0.02 3.05 16 46 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 47 H 0.28 -1.27 8.06 -2.91 -0.02 -1.29 16 Total: -1.00 -77.23 390.94 2.65 -74.58 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.17 Total: 8.39 kcal Atomic # 6 Polarization: 30.25 SS G_CDS: 10.58 Total: 40.82 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -8.76 Total: -136.29 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.38 Total: -34.45 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.23 2.65 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264107476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.192 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds