Wall clock time and date at job start Wed Apr 1 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 119.99870 * 2 1 4 4 O 1.21521 * 120.00009 * 185.58328 * 3 2 1 5 5 C 1.48156 * 120.00359 * 5.58667 * 3 2 1 6 6 C 1.39440 * 120.09766 * 186.39592 * 5 3 2 7 7 N 1.32078 * 119.86850 * 180.02562 * 6 5 3 8 8 C 1.32138 * 120.07346 * 0.02562 * 7 6 5 9 9 C 1.38720 * 120.19692 * 359.97438 * 8 7 6 10 10 N 1.31802 * 120.12755 * 359.72475 * 9 8 7 11 11 C 1.46505 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53124 * 109.52001 * 59.87176 * 11 2 1 13 13 C 1.53045 * 109.26925 * 182.50291 * 12 11 2 14 14 N 1.46846 * 109.57780 * 59.08595 * 13 12 11 15 15 C 1.46897 * 111.00656 * 174.18973 * 14 13 12 16 16 C 1.50706 * 109.47039 * 294.21458 * 15 14 13 17 17 O 1.21287 * 119.99745 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99840 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99501 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00385 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99820 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00093 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00186 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47392 * 89.99716 * 23 21 19 25 25 H 1.48496 * 109.47589 * 210.00252 * 23 21 19 26 26 H 1.48510 * 109.46650 * 329.99994 * 23 21 19 27 27 C 1.46850 * 111.19840 * 298.28900 * 14 13 12 28 28 C 1.53042 * 109.52164 * 61.73709 * 27 14 13 29 29 H 1.08993 * 109.46852 * 275.40073 * 1 2 3 30 30 H 1.08995 * 109.47279 * 35.40417 * 1 2 3 31 31 H 1.09004 * 109.47078 * 155.40454 * 1 2 3 32 32 H 1.07996 * 120.06493 * 359.97438 * 6 5 3 33 33 H 1.08007 * 119.90225 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.93946 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.51995 * 179.97438 * 11 2 1 36 36 H 1.08994 * 109.50315 * 302.37928 * 12 11 2 37 37 H 1.08997 * 109.50360 * 62.50302 * 12 11 2 38 38 H 1.08997 * 109.41203 * 299.06586 * 13 12 11 39 39 H 1.09001 * 109.45549 * 179.12412 * 13 12 11 40 40 H 1.09003 * 109.46983 * 54.20380 * 15 14 13 41 41 H 1.08992 * 109.47750 * 174.20931 * 15 14 13 42 42 H 0.96996 * 120.00283 * 359.97438 * 18 16 15 43 43 H 0.97005 * 119.99462 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.46068 * 301.72540 * 27 14 13 45 45 H 1.08996 * 109.45522 * 181.74862 * 27 14 13 46 46 H 1.09004 * 109.49734 * 180.88365 * 28 27 14 47 47 H 1.09002 * 109.49925 * 60.76648 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3497 1.1697 -0.1024 5 6 1.4034 2.4472 0.1249 6 6 2.0808 3.6587 -0.0083 7 7 1.4208 4.7972 0.1044 8 6 0.1212 4.7883 0.3434 9 6 -0.5556 3.5847 0.4764 10 7 0.0942 2.4440 0.3595 11 6 2.1976 -1.2688 -0.0006 12 6 1.8260 -2.0735 -1.2492 13 6 2.5460 -3.4235 -1.2127 14 7 2.1569 -4.1562 -0.0010 15 6 2.7217 -5.5122 -0.0014 16 6 2.1088 -6.3113 -1.1225 17 8 1.2824 -5.8015 -1.8493 18 7 2.4789 -7.5925 -1.3175 19 6 1.9208 -8.3196 -2.3370 20 1 1.1844 -7.8659 -2.9837 21 6 2.3028 -9.6403 -2.5384 22 7 1.7675 -10.3374 -3.5154 23 14 3.5771 -10.4250 -1.4204 24 1 2.8967 -11.0587 -0.2625 25 1 4.3312 -11.4567 -2.1768 26 1 4.5166 -9.3831 -0.9331 27 6 2.5472 -3.4239 1.2106 28 6 1.8261 -2.0746 1.2472 29 1 -0.3633 0.0967 1.0231 30 1 -0.3633 0.8376 -0.5953 31 1 -0.3633 -0.9345 -0.4277 32 1 3.1431 3.6661 -0.2023 33 1 -0.4159 5.7209 0.4346 34 1 -1.6178 3.5823 0.6713 35 1 3.2694 -1.0705 -0.0009 36 1 0.7486 -2.2371 -1.2694 37 1 2.1279 -1.5230 -2.1401 38 1 3.6236 -3.2594 -1.2076 39 1 2.2715 -4.0053 -2.0927 40 1 3.8010 -5.4562 -0.1432 41 1 2.5049 -5.9964 0.9507 42 1 3.1400 -8.0001 -0.7365 43 1 2.0340 -11.2595 -3.6557 44 1 3.6249 -3.2597 1.2044 45 1 2.2736 -4.0060 2.0905 46 1 2.1281 -1.5248 2.1387 47 1 0.7486 -2.2383 1.2674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266176468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:49 Heat of formation + Delta-G solvation = -11.850839 kcal Electronic energy + Delta-G solvation = -30118.223852 eV Core-core repulsion = 25915.322838 eV Total energy + Delta-G solvation = -4202.901014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.43077 -41.13055 -40.40161 -39.09940 -36.93163 -35.94478 -35.45393 -33.77564 -33.40546 -32.45335 -31.84966 -29.05533 -27.98616 -26.84329 -25.90971 -25.51390 -24.23002 -23.81713 -21.51443 -21.24020 -20.43237 -20.18381 -19.01829 -18.32380 -17.84326 -17.68179 -17.42565 -16.93047 -16.83552 -16.60016 -16.30138 -15.87187 -15.51588 -15.46107 -15.27927 -15.01101 -14.78031 -14.54716 -14.40963 -14.08924 -13.96173 -13.87589 -13.80322 -13.69242 -13.22934 -12.94344 -12.74598 -12.48009 -12.41023 -12.33301 -12.19618 -12.05809 -11.97456 -11.71339 -11.58166 -11.46910 -11.40362 -10.55239 -10.33442 -10.21180 -10.06855 -9.71348 -9.20384 -8.39499 -5.99703 -0.70200 -0.03042 1.31169 1.36476 1.45071 1.54420 1.71808 1.98824 2.24179 2.62245 2.66897 2.82127 3.15776 3.16542 3.23040 3.37136 3.53862 3.75725 3.82457 3.98972 4.09373 4.12659 4.22354 4.28161 4.29613 4.35144 4.43233 4.48881 4.52227 4.52764 4.64074 4.71834 4.76020 4.89734 4.94872 5.03143 5.08412 5.11829 5.26109 5.31930 5.46383 5.55206 5.91446 6.02983 6.03661 6.18620 6.22548 6.57969 6.62270 6.88144 6.91113 7.42771 8.00261 8.78114 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.001858 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.048143 B =15064.779281 C =15313.412294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.586 5.586 3 C 0.567 3.433 4 O -0.568 6.568 5 C 0.010 3.990 6 C 0.100 3.900 7 N -0.463 5.463 8 C 0.085 3.915 9 C 0.054 3.946 10 N -0.414 5.414 11 C 0.142 3.858 12 C -0.109 4.109 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.054 3.946 16 C 0.452 3.548 17 O -0.603 6.603 18 N -0.593 5.593 19 C -0.325 4.325 20 H 0.056 0.944 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.232 1.232 27 C 0.059 3.941 28 C -0.111 4.111 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.175 0.825 33 H 0.217 0.783 34 H 0.221 0.779 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.044 0.956 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 28.198 15.870 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.315 5.315 3 C 0.354 3.646 4 O -0.447 6.447 5 C -0.128 4.128 6 C -0.058 4.058 7 N -0.177 5.177 8 C -0.077 4.077 9 C -0.109 4.109 10 N -0.132 5.132 11 C 0.039 3.961 12 C -0.148 4.148 13 C -0.069 4.069 14 N -0.259 5.259 15 C -0.077 4.077 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.235 5.235 19 C -0.454 4.454 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.068 4.068 28 C -0.150 4.150 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.192 0.808 33 H 0.234 0.766 34 H 0.237 0.763 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.726 28.270 15.197 32.142 hybrid contribution 1.321 -0.982 -0.302 1.673 sum -0.405 27.288 14.895 31.091 Atomic orbital electron populations 1.22186 0.76649 1.03000 1.03446 1.47879 1.08878 1.04693 1.70041 1.18078 0.86217 0.83583 0.76750 1.90770 1.14537 1.87152 1.52234 1.21831 0.92312 0.94743 1.03938 1.23760 1.02208 0.87274 0.92530 1.68690 1.10430 1.28590 1.10007 1.24897 0.90219 1.02097 0.90484 1.24751 1.03904 0.87555 0.94676 1.68883 1.06335 1.31024 1.07004 1.21197 0.97026 0.82073 0.95815 1.21765 1.01609 0.94147 0.97291 1.22037 0.96654 0.94266 0.93941 1.61476 1.60583 1.01066 1.02751 1.21821 0.97751 0.89867 0.98249 1.20894 0.84981 0.82258 0.87919 1.90513 1.37007 1.70659 1.50510 1.42046 1.39855 1.11600 1.30048 1.18988 1.22445 0.94936 1.09014 0.92615 1.26100 1.00495 0.96141 0.98741 1.69809 1.44821 1.10658 1.32363 0.85374 0.78417 0.79293 0.78493 1.18081 1.20224 1.15570 1.22169 0.97977 0.94276 0.92422 1.21833 1.02126 0.94352 0.96656 0.90914 0.89044 0.91471 0.80769 0.76640 0.76301 0.89640 0.91023 0.91921 0.94850 0.91676 0.90708 0.85710 0.77578 0.91246 0.93825 0.88171 0.89853 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 8.10 127.77 1.04 2.55 16 2 N -0.59 -12.77 2.77 -825.21 -2.28 -15.05 16 3 C 0.57 13.70 7.65 86.88 0.66 14.36 16 4 O -0.57 -17.06 15.71 -3.78 -0.06 -17.12 16 5 C 0.01 0.20 6.56 41.89 0.27 0.47 16 6 C 0.10 1.81 10.77 84.95 0.92 2.73 16 7 N -0.46 -6.93 10.49 -194.13 -2.04 -8.96 16 8 C 0.08 0.60 11.23 84.76 0.95 1.55 16 9 C 0.05 0.36 11.22 84.81 0.95 1.31 16 10 N -0.41 -5.85 6.36 -184.33 -1.17 -7.02 16 11 C 0.14 3.33 2.58 45.07 0.12 3.44 16 12 C -0.11 -2.99 5.41 30.65 0.17 -2.82 16 13 C 0.06 1.89 5.10 86.33 0.44 2.33 16 14 N -0.53 -15.80 4.40 -900.90 -3.96 -19.76 16 15 C 0.05 1.65 5.45 85.56 0.47 2.12 16 16 C 0.45 20.23 7.46 87.66 0.65 20.88 16 17 O -0.60 -32.86 13.90 -3.05 -0.04 -32.91 16 18 N -0.59 -27.88 5.09 -306.99 -1.56 -29.44 16 19 C -0.32 -18.99 10.16 84.04 0.85 -18.14 16 20 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 22 N -0.94 -56.61 13.96 21.66 0.30 -56.31 16 23 Si 0.96 38.89 27.74 68.60 1.90 40.79 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 27 C 0.06 1.24 5.46 86.33 0.47 1.72 16 28 C -0.11 -2.21 5.41 30.65 0.17 -2.04 16 29 H 0.07 1.08 8.00 -2.39 -0.02 1.06 16 30 H 0.09 1.48 5.79 -2.39 -0.01 1.46 16 31 H 0.07 1.21 6.40 -2.38 -0.02 1.20 16 32 H 0.18 3.17 7.66 -2.91 -0.02 3.14 16 33 H 0.22 -0.38 8.06 -2.91 -0.02 -0.40 16 34 H 0.22 -0.47 8.06 -2.91 -0.02 -0.50 16 35 H 0.09 2.27 6.92 -2.39 -0.02 2.25 16 36 H 0.07 2.05 6.58 -2.39 -0.02 2.04 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 2.65 5.78 -2.39 -0.01 2.63 16 40 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 41 H 0.13 3.01 7.99 -2.39 -0.02 2.99 16 42 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 43 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 44 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.10 1.73 8.01 -2.39 -0.02 1.71 16 46 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.08 1.59 7.60 -2.39 -0.02 1.57 16 Total: -1.00 -83.53 378.21 0.10 -83.43 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.42 Total: 32.33 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 8.59 Total: 30.01 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -10.71 Total: -136.55 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.10 Total: -50.02 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -83.53 0.10 -83.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266176468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.583 kcal (2) G-P(sol) polarization free energy of solvation -83.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds