Wall clock time and date at job start Wed Apr 1 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00130 * 2 1 4 4 O 1.21285 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00379 * 359.97438 * 3 2 1 6 6 C 1.52996 * 109.47569 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47547 * 179.97438 * 6 5 3 8 8 F 1.39901 * 109.47030 * 64.99615 * 7 6 5 9 9 F 1.39900 * 109.47263 * 185.00173 * 7 6 5 10 10 C 1.46499 * 119.99846 * 179.97438 * 2 1 3 11 11 C 1.53118 * 109.52490 * 300.00477 * 10 2 1 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 2 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46636 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47594 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47124 * 300.00305 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08998 * 109.46821 * 270.00537 * 1 2 3 29 29 H 1.09004 * 109.46846 * 30.00177 * 1 2 3 30 30 H 1.09000 * 109.47182 * 149.99869 * 1 2 3 31 31 H 1.09002 * 109.46545 * 300.00440 * 5 3 2 32 32 H 1.09002 * 109.46897 * 59.99454 * 5 3 2 33 33 H 1.08998 * 109.47263 * 300.00224 * 6 5 3 34 34 H 1.09006 * 109.46956 * 59.99725 * 6 5 3 35 35 H 1.09001 * 109.46822 * 304.99993 * 7 6 5 36 36 H 1.08996 * 109.52259 * 179.87554 * 10 2 1 37 37 H 1.08995 * 109.50555 * 57.67842 * 11 10 2 38 38 H 1.08995 * 109.50409 * 297.56383 * 11 10 2 39 39 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 40 40 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 41 41 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 42 42 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 44 44 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 46 46 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 47 47 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 48 48 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3856 2.4723 -0.0006 6 6 2.3798 3.6352 0.0002 7 6 1.6149 4.9602 -0.0011 8 9 0.8976 5.0857 1.1935 9 9 2.5199 6.0210 -0.1153 10 6 2.1975 -1.2687 0.0006 11 6 1.8284 -2.0722 1.2507 12 6 2.5506 -3.4210 1.2160 13 7 2.1593 -4.1561 0.0065 14 6 2.7253 -5.5117 0.0083 15 6 2.1115 -6.3138 -1.1102 16 8 1.2843 -5.8061 -1.8376 17 7 2.4863 -7.5936 -1.3061 18 6 1.9321 -8.3216 -2.3271 19 1 1.1955 -7.8694 -2.9747 20 6 2.3180 -9.6410 -2.5287 21 7 3.2138 -10.1914 -1.7404 22 14 1.5623 -10.6332 -3.9194 23 1 1.8561 -9.9713 -5.2159 24 1 2.1376 -12.0022 -3.9204 25 1 0.0921 -10.7147 -3.7272 26 6 2.5463 -3.4260 -1.2073 27 6 1.8239 -2.0773 -1.2450 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7592 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 3.0058 3.5774 0.8906 34 1 3.0072 3.5774 -0.8893 35 1 0.9237 4.9799 -0.8437 36 1 3.2693 -1.0706 -0.0018 37 1 0.7511 -2.2367 1.2726 38 1 2.1309 -1.5202 2.1405 39 1 2.2787 -4.0013 2.0976 40 1 3.6280 -3.2557 1.2079 41 1 2.5102 -5.9941 0.9618 42 1 3.8043 -5.4551 -0.1349 43 1 3.1480 -7.9996 -0.7246 44 1 3.4830 -11.1126 -1.8808 45 1 3.6237 -3.2609 -1.2038 46 1 2.2712 -4.0098 -2.0856 47 1 0.7465 -2.2419 -1.2623 48 1 2.1233 -1.5290 -2.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266185481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:15 Heat of formation + Delta-G solvation = -176.105868 kcal Electronic energy + Delta-G solvation = -30571.587448 eV Core-core repulsion = 25910.874614 eV Total energy + Delta-G solvation = -4660.712833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -49.36387 -47.37647 -40.54845 -39.02580 -37.66778 -35.73612 -34.33498 -33.89679 -32.18126 -31.20885 -30.75094 -28.07233 -27.43555 -26.59819 -24.56218 -23.23613 -23.09883 -22.16976 -19.87835 -19.29420 -19.19426 -18.05899 -17.86787 -17.77933 -17.44646 -16.54533 -16.26598 -16.06998 -15.90027 -15.24611 -14.96423 -14.60403 -14.48516 -14.24743 -14.00275 -13.91624 -13.80633 -13.72412 -13.47813 -13.23645 -13.17096 -13.07877 -12.94466 -12.73376 -12.36079 -12.26494 -11.87217 -11.77342 -11.60419 -11.48375 -11.35725 -11.18442 -11.10293 -11.03572 -10.60482 -10.48258 -10.44172 -10.22226 -10.03730 -9.47331 -8.86185 -8.44686 -7.98548 -7.85083 -6.42251 -3.83184 2.30995 2.61023 3.19059 3.25033 3.29017 3.38155 3.75282 3.89533 3.96666 3.97866 4.08232 4.23403 4.33606 4.58921 4.66459 4.74089 4.80034 4.86249 4.95550 5.04542 5.07582 5.17365 5.24608 5.29386 5.33460 5.36275 5.44902 5.51185 5.56196 5.64595 5.67567 5.79980 5.83532 5.95735 6.00342 6.08908 6.22657 6.29317 6.37011 6.48070 7.09391 7.28630 7.40847 7.54225 7.86424 8.05550 8.61153 9.17293 9.53956 10.05625 10.75363 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.032263 B = 0.001650 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.651607 B =16966.532028 C =17202.966848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.515 3.485 4 O -0.542 6.542 5 C -0.140 4.140 6 C -0.157 4.157 7 C 0.262 3.738 8 F -0.207 7.207 9 F -0.205 7.205 10 C 0.136 3.864 11 C -0.119 4.119 12 C 0.057 3.943 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.055 3.945 27 C -0.118 4.118 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.023 0.977 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 25.068 6.217 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.303 3.697 4 O -0.419 6.419 5 C -0.180 4.180 6 C -0.196 4.196 7 C 0.208 3.792 8 F -0.188 7.188 9 F -0.187 7.187 10 C 0.033 3.967 11 C -0.158 4.158 12 C -0.072 4.072 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.073 4.073 27 C -0.157 4.157 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.200 25.192 5.749 26.179 hybrid contribution 0.849 -0.765 -0.130 1.150 sum -3.351 24.427 5.620 25.288 Atomic orbital electron populations 1.21875 0.79349 1.03756 1.02215 1.47942 1.07221 1.05901 1.72911 1.20435 0.87963 0.85256 0.76071 1.90719 1.13921 1.87310 1.49944 1.21609 0.99072 0.92060 1.05298 1.22426 0.98917 0.90879 1.07335 1.21948 0.86281 0.85429 0.85514 1.92992 1.78964 1.96518 1.50340 1.92999 1.69664 1.59696 1.96312 1.21289 0.97683 0.81869 0.95826 1.21877 1.01983 0.94972 0.96972 1.22054 0.97158 0.94125 0.93829 1.61534 1.59770 1.01214 1.01502 1.21835 0.96920 0.89763 0.99997 1.19737 0.86527 0.83179 0.87631 1.90472 1.36150 1.70393 1.49265 1.41869 1.38475 1.09947 1.29750 1.19640 1.21648 0.93511 1.08098 0.87975 1.25256 0.96779 0.97143 0.98745 1.69603 1.31283 1.14887 1.38524 0.85922 0.79184 0.78285 0.80839 1.19945 1.20996 1.19916 1.22211 0.95952 0.93940 0.95181 1.21884 1.02241 0.95086 0.96447 0.92260 0.91089 0.89932 0.88125 0.87902 0.88582 0.87844 0.87119 0.88459 0.90573 0.91570 0.90394 0.95026 0.89316 0.93449 0.77488 0.91828 0.95835 0.87411 0.90442 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 9.26 59.85 0.55 1.00 16 2 N -0.61 -5.72 2.77 -173.79 -0.48 -6.20 16 3 C 0.51 5.14 7.67 -10.99 -0.08 5.05 16 4 O -0.54 -7.56 15.31 5.55 0.09 -7.47 16 5 C -0.14 -0.81 4.17 -27.89 -0.12 -0.92 16 6 C -0.16 -1.01 4.73 -26.74 -0.13 -1.13 16 7 C 0.26 1.48 5.29 37.16 0.20 1.68 16 8 F -0.21 -1.56 17.02 2.25 0.04 -1.52 16 9 F -0.21 -1.69 17.34 2.25 0.04 -1.65 16 10 C 0.14 1.57 2.59 -67.81 -0.18 1.40 16 11 C -0.12 -1.31 5.41 -26.65 -0.14 -1.45 16 12 C 0.06 0.72 5.46 -3.84 -0.02 0.70 16 13 N -0.52 -8.26 4.40 -236.12 -1.04 -9.30 16 14 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.22 7.46 -10.98 -0.08 10.14 16 16 O -0.58 -15.05 13.90 5.55 0.08 -14.97 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 22 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.06 0.88 5.10 -3.84 -0.02 0.86 16 27 C -0.12 -1.52 5.40 -26.65 -0.14 -1.67 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.28 6.44 -51.93 -0.33 -0.06 16 30 H 0.08 0.59 6.38 -51.93 -0.33 0.26 16 31 H 0.10 0.33 7.40 -51.93 -0.38 -0.05 16 32 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 33 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 1.32 6.90 -51.93 -0.36 0.96 16 37 H 0.08 0.83 7.60 -51.93 -0.39 0.44 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 2.09 5.78 -51.93 -0.30 1.79 16 47 H 0.08 1.02 6.57 -51.93 -0.34 0.68 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -33.25 390.64 -7.50 -40.75 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.32 Total: 7.83 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.43 Total: 8.55 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.85 Total: -53.23 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.16 Total: -22.45 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.25 -7.50 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266185481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.353 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds