Wall clock time and date at job start Wed Apr 1 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00130 * 2 1 4 4 O 1.21285 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00379 * 359.97438 * 3 2 1 6 6 C 1.52996 * 109.47569 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47547 * 179.97438 * 6 5 3 8 8 F 1.39901 * 109.47030 * 64.99615 * 7 6 5 9 9 F 1.39900 * 109.47263 * 185.00173 * 7 6 5 10 10 C 1.46499 * 119.99846 * 179.97438 * 2 1 3 11 11 C 1.53118 * 109.52490 * 300.00477 * 10 2 1 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 2 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46636 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47594 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47124 * 300.00305 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08998 * 109.46821 * 270.00537 * 1 2 3 29 29 H 1.09004 * 109.46846 * 30.00177 * 1 2 3 30 30 H 1.09000 * 109.47182 * 149.99869 * 1 2 3 31 31 H 1.09002 * 109.46545 * 300.00440 * 5 3 2 32 32 H 1.09002 * 109.46897 * 59.99454 * 5 3 2 33 33 H 1.08998 * 109.47263 * 300.00224 * 6 5 3 34 34 H 1.09006 * 109.46956 * 59.99725 * 6 5 3 35 35 H 1.09001 * 109.46822 * 304.99993 * 7 6 5 36 36 H 1.08996 * 109.52259 * 179.87554 * 10 2 1 37 37 H 1.08995 * 109.50555 * 57.67842 * 11 10 2 38 38 H 1.08995 * 109.50409 * 297.56383 * 11 10 2 39 39 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 40 40 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 41 41 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 42 42 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 44 44 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 46 46 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 47 47 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 48 48 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3856 2.4723 -0.0006 6 6 2.3798 3.6352 0.0002 7 6 1.6149 4.9602 -0.0011 8 9 0.8976 5.0857 1.1935 9 9 2.5199 6.0210 -0.1153 10 6 2.1975 -1.2687 0.0006 11 6 1.8284 -2.0722 1.2507 12 6 2.5506 -3.4210 1.2160 13 7 2.1593 -4.1561 0.0065 14 6 2.7253 -5.5117 0.0083 15 6 2.1115 -6.3138 -1.1102 16 8 1.2843 -5.8061 -1.8376 17 7 2.4863 -7.5936 -1.3061 18 6 1.9321 -8.3216 -2.3271 19 1 1.1955 -7.8694 -2.9747 20 6 2.3180 -9.6410 -2.5287 21 7 3.2138 -10.1914 -1.7404 22 14 1.5623 -10.6332 -3.9194 23 1 1.8561 -9.9713 -5.2159 24 1 2.1376 -12.0022 -3.9204 25 1 0.0921 -10.7147 -3.7272 26 6 2.5463 -3.4260 -1.2073 27 6 1.8239 -2.0773 -1.2450 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7592 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 3.0058 3.5774 0.8906 34 1 3.0072 3.5774 -0.8893 35 1 0.9237 4.9799 -0.8437 36 1 3.2693 -1.0706 -0.0018 37 1 0.7511 -2.2367 1.2726 38 1 2.1309 -1.5202 2.1405 39 1 2.2787 -4.0013 2.0976 40 1 3.6280 -3.2557 1.2079 41 1 2.5102 -5.9941 0.9618 42 1 3.8043 -5.4551 -0.1349 43 1 3.1480 -7.9996 -0.7246 44 1 3.4830 -11.1126 -1.8808 45 1 3.6237 -3.2609 -1.2038 46 1 2.2712 -4.0098 -2.0856 47 1 0.7465 -2.2419 -1.2623 48 1 2.1233 -1.5290 -2.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266185481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:07 Heat of formation + Delta-G solvation = -199.177884 kcal Electronic energy + Delta-G solvation = -30572.587925 eV Core-core repulsion = 25910.874614 eV Total energy + Delta-G solvation = -4661.713311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -49.86905 -47.90046 -41.40576 -40.44186 -39.10624 -36.74916 -35.85639 -34.90080 -33.41163 -33.02051 -31.84083 -29.15694 -28.06713 -27.62946 -26.22292 -24.27324 -24.10396 -22.92829 -21.04462 -20.78824 -20.08013 -19.85751 -18.52557 -18.40299 -18.05140 -17.76602 -17.32434 -16.83565 -16.78176 -16.58715 -16.32591 -16.22391 -15.57851 -15.38502 -15.13229 -15.08358 -14.78966 -14.55551 -14.31743 -14.24893 -14.20027 -13.82570 -13.80398 -13.49248 -13.47435 -13.30199 -13.17382 -12.90891 -12.79670 -12.72154 -12.42858 -12.29667 -12.23271 -12.17621 -12.10972 -11.81140 -11.70681 -11.54165 -11.39003 -10.85889 -10.24842 -9.98567 -9.63856 -9.22040 -8.44828 -5.93375 1.40408 1.42163 1.52955 1.58352 1.90987 2.07316 2.29107 2.75066 2.91896 3.21926 3.35559 3.38830 3.50968 3.60786 3.70481 3.85756 3.90036 4.02976 4.18445 4.21237 4.26195 4.27826 4.35482 4.37435 4.46709 4.48222 4.54691 4.56771 4.63664 4.71440 4.72430 4.86814 4.92273 4.95557 4.99609 5.03398 5.08854 5.13516 5.31721 5.42162 5.52330 5.89110 6.08073 6.22368 6.40141 6.62420 7.13070 7.14596 7.58574 8.14088 8.72315 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.032263 B = 0.001650 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.651607 B =16966.532028 C =17202.966848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.508 3.492 4 O -0.590 6.590 5 C -0.130 4.130 6 C -0.155 4.155 7 C 0.262 3.738 8 F -0.217 7.217 9 F -0.223 7.223 10 C 0.142 3.858 11 C -0.110 4.110 12 C 0.056 3.944 13 N -0.528 5.528 14 C 0.056 3.944 15 C 0.442 3.558 16 O -0.611 6.611 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.058 3.942 27 C -0.106 4.106 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 26.171 6.818 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.338 5.338 3 C 0.298 3.702 4 O -0.471 6.471 5 C -0.170 4.170 6 C -0.193 4.193 7 C 0.208 3.792 8 F -0.199 7.199 9 F -0.205 7.205 10 C 0.038 3.962 11 C -0.149 4.149 12 C -0.072 4.072 13 N -0.253 5.253 14 C -0.075 4.075 15 C 0.230 3.770 16 O -0.497 6.497 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.070 4.070 27 C -0.145 4.145 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.172 0.828 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.627 26.309 6.377 27.649 hybrid contribution 1.294 -1.064 -0.301 1.702 sum -4.333 25.245 6.075 26.325 Atomic orbital electron populations 1.22129 0.77113 1.04890 1.03566 1.48001 1.08507 1.04932 1.72344 1.21202 0.87632 0.86516 0.74859 1.90702 1.16225 1.88010 1.52173 1.21640 0.98666 0.88856 1.07802 1.22359 0.99045 0.91983 1.05963 1.22305 0.86456 0.84109 0.86292 1.92970 1.79059 1.96494 1.51353 1.92964 1.70570 1.60531 1.96386 1.21005 0.96852 0.82975 0.95320 1.21809 1.02020 0.93977 0.97063 1.22172 0.97676 0.94760 0.92548 1.61529 1.60163 1.00846 1.02731 1.21727 0.97192 0.90114 0.98433 1.20728 0.85506 0.82707 0.88086 1.90451 1.37554 1.70972 1.50750 1.41942 1.38938 1.10696 1.29698 1.19622 1.22516 0.94616 1.09349 0.90192 1.26028 0.96948 0.97528 1.00853 1.69670 1.31747 1.15321 1.39502 0.84996 0.78396 0.77144 0.77842 1.19773 1.19644 1.19658 1.22065 0.96313 0.94788 0.93884 1.21743 1.01617 0.93683 0.97447 0.90770 0.87975 0.90858 0.84619 0.86033 0.90939 0.88450 0.82764 0.90656 0.90074 0.90142 0.88785 0.94656 0.86930 0.91988 0.77115 0.91388 0.95772 0.91441 0.90574 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 9.26 127.77 1.18 1.80 16 2 N -0.61 -10.29 2.77 -822.13 -2.28 -12.57 16 3 C 0.51 9.37 7.67 87.66 0.67 10.04 16 4 O -0.59 -16.53 15.31 -3.04 -0.05 -16.58 16 5 C -0.13 -1.11 4.17 29.85 0.12 -0.99 16 6 C -0.15 -1.77 4.73 30.59 0.14 -1.62 16 7 C 0.26 2.35 5.29 71.98 0.38 2.73 16 8 F -0.22 -2.80 17.02 44.97 0.77 -2.04 16 9 F -0.22 -3.43 17.34 44.97 0.78 -2.65 16 10 C 0.14 3.17 2.59 45.07 0.12 3.29 16 11 C -0.11 -2.20 5.41 30.65 0.17 -2.04 16 12 C 0.06 1.32 5.46 86.33 0.47 1.79 16 13 N -0.53 -16.60 4.40 -900.95 -3.96 -20.56 16 14 C 0.06 1.94 5.45 85.56 0.47 2.41 16 15 C 0.44 20.79 7.46 87.66 0.65 21.44 16 16 O -0.61 -32.88 13.90 -3.07 -0.04 -32.92 16 17 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 18 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 21 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 22 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.06 1.88 5.10 86.33 0.44 2.32 16 27 C -0.11 -2.74 5.40 30.65 0.17 -2.57 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.35 6.44 -2.39 -0.02 0.33 16 30 H 0.07 0.88 6.38 -2.39 -0.02 0.87 16 31 H 0.14 0.24 7.40 -2.39 -0.02 0.22 16 32 H 0.12 0.66 7.90 -2.39 -0.02 0.64 16 33 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 34 H 0.10 1.23 8.10 -2.38 -0.02 1.21 16 35 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.08 2.05 6.90 -2.39 -0.02 2.03 16 37 H 0.08 1.57 7.60 -2.39 -0.02 1.56 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.92 8.01 -2.39 -0.02 1.90 16 40 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.11 3.36 7.99 -2.38 -0.02 3.34 16 42 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 43 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 44 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 2.75 5.78 -2.39 -0.01 2.73 16 47 H 0.08 1.98 6.57 -2.39 -0.02 1.97 16 48 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.36 390.64 2.42 -72.94 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.25 Total: 29.54 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.27 Total: 20.45 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -7.58 Total: -113.53 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.09 Total: -49.50 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.54 Total: -4.68 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.36 2.42 -72.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266185481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.239 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds