Wall clock time and date at job start Wed Apr 1 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00053 * 2 1 4 4 C 1.50692 * 109.47296 * 293.95596 * 3 2 1 5 5 O 1.21299 * 120.00163 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00560 * 179.97438 * 4 3 2 7 7 C 1.37099 * 120.00544 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99807 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00413 * 180.02562 * 7 6 4 10 10 N 1.31421 * 119.99937 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00337 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47054 * 59.99915 * 11 9 7 13 13 H 1.48502 * 109.47495 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47052 * 299.99737 * 11 9 7 15 15 C 1.46896 * 111.00284 * 123.95128 * 2 1 3 16 16 H 1.09001 * 109.52634 * 296.13141 * 15 2 1 17 17 C 1.53076 * 109.62124 * 56.15382 * 15 2 1 18 18 C 1.53038 * 109.66329 * 181.16955 * 17 15 2 19 19 C 1.53191 * 109.31296 * 298.70552 * 18 17 15 20 20 N 1.46930 * 108.77686 * 54.63153 * 19 18 17 21 21 C 1.34781 * 120.63195 * 126.37530 * 20 19 18 22 22 O 1.21513 * 119.99976 * 179.63886 * 21 20 19 23 23 C 1.48158 * 119.99881 * 359.63007 * 21 20 19 24 24 C 1.39709 * 120.18334 * 201.22594 * 23 21 20 25 25 C 1.38822 * 117.89811 * 179.74081 * 24 23 21 26 26 C 1.38571 * 118.06877 * 0.52763 * 25 24 23 27 27 N 1.32166 * 120.06644 * 359.72758 * 26 25 24 28 28 N 1.28353 * 122.30548 * 359.97438 * 27 26 25 29 29 C 1.46927 * 118.73617 * 306.38866 * 20 19 18 30 30 H 1.08990 * 109.47394 * 296.04435 * 1 2 3 31 31 H 1.08995 * 109.46896 * 56.04927 * 1 2 3 32 32 H 1.09001 * 109.46728 * 176.04550 * 1 2 3 33 33 H 1.09001 * 109.46825 * 53.95027 * 3 2 1 34 34 H 1.08997 * 109.47699 * 173.94958 * 3 2 1 35 35 H 0.97006 * 120.00007 * 359.97438 * 6 4 3 36 36 H 0.96997 * 120.00412 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.34355 * 61.15085 * 17 15 2 38 38 H 1.08997 * 109.45337 * 301.26526 * 17 15 2 39 39 H 1.08993 * 109.50405 * 178.74843 * 18 17 15 40 40 H 1.09006 * 109.49350 * 58.65140 * 18 17 15 41 41 H 1.09000 * 109.58629 * 294.84428 * 19 18 17 42 42 H 1.09005 * 109.59112 * 174.41613 * 19 18 17 43 43 H 1.08002 * 121.04950 * 359.97438 * 24 23 21 44 44 H 1.08004 * 120.96474 * 180.22806 * 25 24 23 45 45 H 1.08004 * 119.96371 * 179.70480 * 26 25 24 46 46 H 1.09000 * 109.57971 * 173.39559 * 29 20 19 47 47 H 1.08996 * 109.59070 * 293.68007 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2983 5 8 1.0054 1.4454 -2.1411 6 7 2.0180 3.3202 -1.5233 7 6 1.6913 3.9351 -2.7043 8 1 1.1290 3.3993 -3.4546 9 6 2.0846 5.2474 -2.9364 10 7 2.7693 5.8994 -2.0235 11 14 1.6402 6.0850 -4.5458 12 1 0.1630 6.1218 -4.6932 13 1 2.1718 7.4716 -4.5456 14 1 2.2320 5.3276 -5.6778 15 6 1.9955 -0.7659 1.1376 16 1 1.7036 -0.2813 2.0693 17 6 1.4300 -2.1880 1.1056 18 6 1.9550 -2.9781 2.3066 19 6 3.4825 -3.0634 2.2283 20 7 4.0270 -1.7033 2.1160 21 6 4.9700 -1.2680 2.9750 22 8 5.4171 -0.1432 2.8675 23 6 5.4614 -2.1609 4.0503 24 6 6.0761 -1.6230 5.1838 25 6 6.5137 -2.5027 6.1645 26 6 6.3247 -3.8593 5.9549 27 7 5.7376 -4.2831 4.8492 28 7 5.3246 -3.4771 3.9397 29 6 3.5237 -0.8267 1.0497 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1083 35 1 2.5227 3.8017 -0.8492 36 1 3.0436 6.8156 -2.1853 37 1 1.7409 -2.6795 0.1837 38 1 0.3415 -2.1468 1.1457 39 1 1.5333 -3.9830 2.2935 40 1 1.6655 -2.4736 3.2285 41 1 3.7716 -3.6461 1.3537 42 1 3.8687 -3.5382 3.1303 43 1 6.2033 -0.5563 5.2952 44 1 6.9921 -2.1405 7.0625 45 1 6.6577 -4.5712 6.6958 46 1 3.9369 0.1742 1.1741 47 1 3.8183 -1.2257 0.0791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267113893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:17 Heat of formation + Delta-G solvation = 25.081300 kcal Electronic energy + Delta-G solvation = -30505.777034 eV Core-core repulsion = 26304.477518 eV Total energy + Delta-G solvation = -4201.299517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.79043 -40.16530 -38.75299 -37.68404 -35.81322 -33.90045 -33.72068 -33.30269 -32.48313 -31.19255 -30.14248 -28.19287 -26.45987 -25.48835 -25.14185 -24.32558 -23.89318 -22.16297 -20.92563 -19.70025 -19.08050 -18.41976 -17.79195 -17.56549 -17.27258 -16.49902 -16.24208 -15.68572 -15.24510 -15.07075 -14.93056 -14.65857 -14.59928 -14.34724 -14.15382 -13.79923 -13.77220 -13.63015 -13.33409 -13.07055 -12.98440 -12.52320 -12.13220 -11.95354 -11.57776 -11.49887 -11.41919 -11.24828 -11.12598 -10.95919 -10.81706 -10.75618 -10.62057 -10.41051 -10.36030 -10.28046 -10.16701 -9.82727 -9.42441 -8.84637 -8.40927 -7.93886 -7.82987 -6.37044 -3.77938 -0.03563 0.19581 2.26869 2.50984 3.08917 3.23073 3.28518 3.32855 3.40753 3.84400 3.93998 3.95509 4.02560 4.16285 4.26915 4.31607 4.51357 4.69181 4.79384 4.92894 4.95055 5.13190 5.16648 5.21781 5.29700 5.31387 5.40866 5.45116 5.53813 5.66931 5.74311 5.77663 5.79698 5.86492 5.92968 5.97024 6.01598 6.06083 6.24244 6.30784 6.34311 6.58654 7.08072 7.28110 7.40090 7.59194 7.72393 8.01330 8.10632 8.66515 9.22379 9.59305 10.11183 10.80631 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.002253 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.707309 B =12426.361279 C =13688.955484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.510 5.510 3 C 0.040 3.960 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.074 3.926 16 H 0.040 0.960 17 C -0.116 4.116 18 C -0.133 4.133 19 C 0.076 3.924 20 N -0.584 5.584 21 C 0.571 3.429 22 O -0.525 6.525 23 C 0.032 3.968 24 C -0.066 4.066 25 C -0.119 4.119 26 C 0.055 3.945 27 N -0.247 5.247 28 N -0.205 5.205 29 C 0.113 3.887 30 H 0.013 0.987 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.179 0.821 46 H 0.097 0.903 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -19.047 20.244 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.235 5.235 3 C -0.092 4.092 4 C 0.231 3.769 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.036 4.036 16 H 0.058 0.942 17 C -0.154 4.154 18 C -0.172 4.172 19 C -0.047 4.047 20 N -0.315 5.315 21 C 0.355 3.645 22 O -0.400 6.400 23 C -0.114 4.114 24 C -0.095 4.095 25 C -0.148 4.148 26 C -0.108 4.108 27 N -0.089 5.089 28 N -0.052 5.052 29 C -0.009 4.009 30 H 0.031 0.969 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.149 0.851 43 H 0.181 0.819 44 H 0.177 0.823 45 H 0.196 0.804 46 H 0.115 0.885 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.084 -20.126 18.255 27.643 hybrid contribution 0.384 2.407 1.328 2.775 sum 5.468 -17.720 19.583 26.970 Atomic orbital electron populations 1.22569 0.86400 1.02144 1.01428 1.61569 1.08806 1.12661 1.40427 1.21966 1.00962 0.88938 0.97288 1.19683 0.85445 0.82923 0.88866 1.90480 1.43975 1.64656 1.47084 1.41865 1.49415 1.10746 1.18041 1.19640 1.32960 0.95420 0.94770 0.87964 1.25265 0.96851 0.96683 0.99204 1.69613 1.37986 1.12261 1.34446 0.85921 0.78843 0.77911 0.81543 1.19964 1.21025 1.19892 1.21916 0.94087 0.94968 0.92626 0.94204 1.21677 1.00756 0.94220 0.98764 1.21952 0.95463 1.01017 0.98745 1.22840 0.93529 0.82142 1.06163 1.47945 1.38143 1.15384 1.30054 1.17616 0.80280 0.85737 0.80826 1.90847 1.57910 1.18924 1.72298 1.22893 0.98738 0.93456 0.96271 1.22457 0.92266 1.03255 0.91505 1.22503 0.98004 0.93984 1.00278 1.24502 0.94098 0.95691 0.96461 1.73172 1.07125 1.29161 0.99439 1.73174 1.10420 1.01232 1.20352 1.21836 0.93341 0.95864 0.89906 0.96867 0.88428 0.91747 0.93449 0.89153 0.77469 0.91848 0.90459 0.91150 0.90189 0.92063 0.90588 0.85074 0.81892 0.82269 0.80430 0.88485 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.75 60.06 0.53 0.89 16 2 N -0.51 -8.62 4.37 -236.18 -1.03 -9.65 16 3 C 0.04 0.74 5.26 -4.98 -0.03 0.71 16 4 C 0.45 10.70 7.47 -10.99 -0.08 10.62 16 5 O -0.58 -15.60 13.91 5.54 0.08 -15.52 16 6 N -0.56 -14.61 5.29 -10.97 -0.06 -14.67 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 11 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.07 1.00 2.10 -67.58 -0.14 0.86 16 16 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 17 C -0.12 -1.29 4.85 -26.67 -0.13 -1.42 16 18 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 19 C 0.08 0.76 6.01 -3.71 -0.02 0.74 16 20 N -0.58 -7.17 2.97 -173.76 -0.52 -7.68 16 21 C 0.57 7.43 7.63 -12.18 -0.09 7.34 16 22 O -0.52 -8.32 16.00 5.35 0.09 -8.24 16 23 C 0.03 0.33 6.54 -82.83 -0.54 -0.21 16 24 C -0.07 -0.49 9.73 -38.82 -0.38 -0.87 16 25 C -0.12 -0.54 10.20 -39.24 -0.40 -0.94 16 26 C 0.06 0.29 11.31 -17.29 -0.20 0.10 16 27 N -0.25 -2.20 11.51 30.58 0.35 -1.85 16 28 N -0.21 -2.10 7.57 33.32 0.25 -1.85 16 29 C 0.11 1.55 5.32 -3.71 -0.02 1.53 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 32 H 0.06 0.90 6.22 -51.93 -0.32 0.58 16 33 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.09 1.59 5.95 -51.93 -0.31 1.28 16 35 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.76 6.29 -51.93 -0.33 0.43 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.13 1.30 3.97 -119.46 -0.47 0.83 16 43 H 0.16 1.08 7.86 -52.49 -0.41 0.67 16 44 H 0.16 0.15 8.06 -52.48 -0.42 -0.27 16 45 H 0.18 0.27 8.06 -52.48 -0.42 -0.15 16 46 H 0.10 1.49 5.38 -51.93 -0.28 1.21 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -34.28 378.07 -7.83 -42.11 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.49 Total: 9.70 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.91 Total: 9.88 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.28 Total: -59.99 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.16 Total: -23.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.28 -7.83 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267113893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.192 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds