Wall clock time and date at job start Wed Apr 1 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00053 * 2 1 4 4 C 1.50692 * 109.47296 * 293.95596 * 3 2 1 5 5 O 1.21299 * 120.00163 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00560 * 179.97438 * 4 3 2 7 7 C 1.37099 * 120.00544 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99807 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00413 * 180.02562 * 7 6 4 10 10 N 1.31421 * 119.99937 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00337 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47054 * 59.99915 * 11 9 7 13 13 H 1.48502 * 109.47495 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47052 * 299.99737 * 11 9 7 15 15 C 1.46896 * 111.00284 * 123.95128 * 2 1 3 16 16 H 1.09001 * 109.52634 * 296.13141 * 15 2 1 17 17 C 1.53076 * 109.62124 * 56.15382 * 15 2 1 18 18 C 1.53038 * 109.66329 * 181.16955 * 17 15 2 19 19 C 1.53191 * 109.31296 * 298.70552 * 18 17 15 20 20 N 1.46930 * 108.77686 * 54.63153 * 19 18 17 21 21 C 1.34781 * 120.63195 * 126.37530 * 20 19 18 22 22 O 1.21513 * 119.99976 * 179.63886 * 21 20 19 23 23 C 1.48158 * 119.99881 * 359.63007 * 21 20 19 24 24 C 1.39709 * 120.18334 * 201.22594 * 23 21 20 25 25 C 1.38822 * 117.89811 * 179.74081 * 24 23 21 26 26 C 1.38571 * 118.06877 * 0.52763 * 25 24 23 27 27 N 1.32166 * 120.06644 * 359.72758 * 26 25 24 28 28 N 1.28353 * 122.30548 * 359.97438 * 27 26 25 29 29 C 1.46927 * 118.73617 * 306.38866 * 20 19 18 30 30 H 1.08990 * 109.47394 * 296.04435 * 1 2 3 31 31 H 1.08995 * 109.46896 * 56.04927 * 1 2 3 32 32 H 1.09001 * 109.46728 * 176.04550 * 1 2 3 33 33 H 1.09001 * 109.46825 * 53.95027 * 3 2 1 34 34 H 1.08997 * 109.47699 * 173.94958 * 3 2 1 35 35 H 0.97006 * 120.00007 * 359.97438 * 6 4 3 36 36 H 0.96997 * 120.00412 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.34355 * 61.15085 * 17 15 2 38 38 H 1.08997 * 109.45337 * 301.26526 * 17 15 2 39 39 H 1.08993 * 109.50405 * 178.74843 * 18 17 15 40 40 H 1.09006 * 109.49350 * 58.65140 * 18 17 15 41 41 H 1.09000 * 109.58629 * 294.84428 * 19 18 17 42 42 H 1.09005 * 109.59112 * 174.41613 * 19 18 17 43 43 H 1.08002 * 121.04950 * 359.97438 * 24 23 21 44 44 H 1.08004 * 120.96474 * 180.22806 * 25 24 23 45 45 H 1.08004 * 119.96371 * 179.70480 * 26 25 24 46 46 H 1.09000 * 109.57971 * 173.39559 * 29 20 19 47 47 H 1.08996 * 109.59070 * 293.68007 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2983 5 8 1.0054 1.4454 -2.1411 6 7 2.0180 3.3202 -1.5233 7 6 1.6913 3.9351 -2.7043 8 1 1.1290 3.3993 -3.4546 9 6 2.0846 5.2474 -2.9364 10 7 2.7693 5.8994 -2.0235 11 14 1.6402 6.0850 -4.5458 12 1 0.1630 6.1218 -4.6932 13 1 2.1718 7.4716 -4.5456 14 1 2.2320 5.3276 -5.6778 15 6 1.9955 -0.7659 1.1376 16 1 1.7036 -0.2813 2.0693 17 6 1.4300 -2.1880 1.1056 18 6 1.9550 -2.9781 2.3066 19 6 3.4825 -3.0634 2.2283 20 7 4.0270 -1.7033 2.1160 21 6 4.9700 -1.2680 2.9750 22 8 5.4171 -0.1432 2.8675 23 6 5.4614 -2.1609 4.0503 24 6 6.0761 -1.6230 5.1838 25 6 6.5137 -2.5027 6.1645 26 6 6.3247 -3.8593 5.9549 27 7 5.7376 -4.2831 4.8492 28 7 5.3246 -3.4771 3.9397 29 6 3.5237 -0.8267 1.0497 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1083 35 1 2.5227 3.8017 -0.8492 36 1 3.0436 6.8156 -2.1853 37 1 1.7409 -2.6795 0.1837 38 1 0.3415 -2.1468 1.1457 39 1 1.5333 -3.9830 2.2935 40 1 1.6655 -2.4736 3.2285 41 1 3.7716 -3.6461 1.3537 42 1 3.8687 -3.5382 3.1303 43 1 6.2033 -0.5563 5.2952 44 1 6.9921 -2.1405 7.0625 45 1 6.6577 -4.5712 6.6958 46 1 3.9369 0.1742 1.1741 47 1 3.8183 -1.2257 0.0791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267113893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:15 Heat of formation + Delta-G solvation = -0.810777 kcal Electronic energy + Delta-G solvation = -30506.899799 eV Core-core repulsion = 26304.477518 eV Total energy + Delta-G solvation = -4202.422281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.45561 -41.14312 -40.30868 -39.06336 -37.07495 -35.86425 -34.31016 -34.04964 -33.42561 -33.23325 -31.20844 -29.68981 -27.39357 -26.93722 -25.86448 -25.57759 -24.94784 -23.23078 -21.90191 -20.98629 -20.66081 -19.85764 -19.21384 -18.21315 -17.91587 -17.74879 -17.37592 -16.82627 -16.64117 -16.35188 -16.25394 -15.88600 -15.68343 -15.49937 -15.38227 -15.19626 -14.86044 -14.66369 -14.39771 -14.17096 -14.07108 -13.78000 -13.54531 -13.41191 -12.99272 -12.91086 -12.75350 -12.49948 -12.45066 -12.40932 -12.12895 -11.92572 -11.83142 -11.47819 -11.45242 -11.32092 -11.28638 -11.00328 -10.52964 -10.29955 -10.01212 -9.83177 -9.28884 -8.46310 -5.95554 -0.62633 -0.30632 1.39358 1.40697 1.44127 1.52190 1.60497 2.03211 2.27673 2.46059 2.67953 2.74362 3.19429 3.30131 3.36572 3.44281 3.65212 3.73387 3.81615 3.85282 4.02619 4.07067 4.12214 4.18271 4.24210 4.30171 4.41160 4.53151 4.56417 4.57016 4.68812 4.73715 4.76881 4.82777 4.89455 4.98691 5.01321 5.05557 5.16555 5.24323 5.36033 5.40743 5.42441 5.84004 6.03080 6.12151 6.17258 6.59366 6.77213 7.11935 7.42895 7.54856 8.10147 8.71081 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.002253 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.707309 B =12426.361279 C =13688.955484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.525 5.525 3 C 0.053 3.947 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.575 5.575 7 C -0.332 4.332 8 H 0.082 0.918 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.270 1.270 13 H -0.271 1.271 14 H -0.272 1.272 15 C 0.080 3.920 16 H 0.041 0.959 17 C -0.112 4.112 18 C -0.123 4.123 19 C 0.074 3.926 20 N -0.583 5.583 21 C 0.566 3.434 22 O -0.565 6.565 23 C 0.011 3.989 24 C -0.079 4.079 25 C -0.094 4.094 26 C 0.064 3.936 27 N -0.274 5.274 28 N -0.222 5.222 29 C 0.116 3.884 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.166 0.834 44 H 0.205 0.795 45 H 0.221 0.779 46 H 0.076 0.924 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -20.617 22.636 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.249 5.249 3 C -0.078 4.078 4 C 0.232 3.768 5 O -0.495 6.495 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.100 0.900 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.819 3.181 12 H -0.195 1.195 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.028 4.028 16 H 0.059 0.941 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.047 4.047 20 N -0.314 5.314 21 C 0.352 3.648 22 O -0.444 6.444 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.099 4.099 27 N -0.116 5.116 28 N -0.069 5.069 29 C -0.007 4.007 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.228 0.772 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.156 0.844 43 H 0.183 0.817 44 H 0.222 0.778 45 H 0.237 0.763 46 H 0.095 0.905 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.538 -21.736 20.670 30.502 hybrid contribution 0.312 2.782 0.711 2.888 sum 5.849 -18.955 21.381 29.166 Atomic orbital electron populations 1.22468 0.86043 1.03171 1.00333 1.61539 1.09284 1.11562 1.42553 1.21783 1.01706 0.89984 0.94358 1.20580 0.83841 0.82236 0.90170 1.90455 1.45029 1.65248 1.48775 1.41952 1.50029 1.11549 1.17708 1.19644 1.34440 0.96396 0.95625 0.90044 1.26097 0.96250 0.96677 1.02522 1.69687 1.38113 1.12677 1.35884 0.84956 0.78684 0.77206 0.77287 1.19516 1.19559 1.19675 1.21936 0.93740 0.96003 0.91161 0.94141 1.21670 1.01181 0.92473 0.99617 1.21917 0.94559 1.02052 0.97636 1.23012 0.94186 0.80848 1.06699 1.48033 1.38008 1.15930 1.29424 1.18094 0.79781 0.85697 0.81206 1.90808 1.59266 1.20759 1.73518 1.22590 1.00782 0.93509 0.96572 1.22651 0.92484 1.04085 0.91547 1.22995 0.95799 0.93069 1.00406 1.25214 0.91945 0.97009 0.95697 1.73100 1.08533 1.29284 1.00679 1.73053 1.11413 1.00997 1.21421 1.21638 0.93588 0.95252 0.90226 0.95493 0.92257 0.89237 0.92027 0.88204 0.77245 0.91326 0.90870 0.90239 0.87600 0.91953 0.90315 0.84412 0.81657 0.77832 0.76269 0.90524 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 8.75 127.69 1.12 2.01 16 2 N -0.52 -17.81 4.37 -901.13 -3.94 -21.75 16 3 C 0.05 2.02 5.26 85.55 0.45 2.47 16 4 C 0.44 22.15 7.47 87.66 0.66 22.80 16 5 O -0.61 -34.22 13.91 -3.09 -0.04 -34.26 16 6 N -0.58 -30.92 5.29 -306.99 -1.62 -32.54 16 7 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 8 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 9 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 10 N -0.92 -51.58 13.05 21.66 0.28 -51.29 16 11 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.08 2.16 2.10 45.01 0.09 2.25 16 16 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 17 C -0.11 -2.32 4.85 30.63 0.15 -2.17 16 18 C -0.12 -2.01 6.08 30.67 0.19 -1.82 16 19 C 0.07 1.43 6.01 86.36 0.52 1.94 16 20 N -0.58 -14.53 2.97 -821.94 -2.44 -16.98 16 21 C 0.57 15.20 7.63 86.88 0.66 15.86 16 22 O -0.57 -18.86 16.00 -3.76 -0.06 -18.92 16 23 C 0.01 0.22 6.54 41.99 0.27 0.50 16 24 C -0.08 -1.08 9.73 22.77 0.22 -0.86 16 25 C -0.09 -0.51 10.20 22.49 0.23 -0.28 16 26 C 0.06 0.44 11.31 84.72 0.96 1.40 16 27 N -0.27 -4.32 11.51 -57.15 -0.66 -4.98 16 28 N -0.22 -4.36 7.57 -48.49 -0.37 -4.73 16 29 C 0.12 3.28 5.32 86.36 0.46 3.74 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 2.41 5.82 -2.39 -0.01 2.40 16 32 H 0.09 2.40 6.22 -2.39 -0.01 2.39 16 33 H 0.06 2.18 8.12 -2.39 -0.02 2.17 16 34 H 0.10 3.64 5.95 -2.39 -0.01 3.63 16 35 H 0.39 20.46 7.90 -92.70 -0.73 19.73 16 36 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.52 6.29 -2.39 -0.02 1.51 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.14 2.61 3.97 -89.73 -0.36 2.26 16 43 H 0.17 2.09 7.86 -2.91 -0.02 2.07 16 44 H 0.20 -0.74 8.06 -2.91 -0.02 -0.76 16 45 H 0.22 -0.46 8.06 -2.91 -0.02 -0.49 16 46 H 0.08 2.48 5.38 -2.39 -0.01 2.47 16 47 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.13 378.07 0.38 -77.75 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.05 Total: 32.72 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.26 Total: 28.89 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -8.75 Total: -132.27 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.10 Total: -53.17 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -78.13 0.38 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267113893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.936 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds