Wall clock time and date at job start Wed Apr 1 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00251 * 2 1 4 4 C 1.53003 * 109.46963 * 293.95280 * 3 2 1 5 5 N 1.46500 * 109.46755 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00169 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99624 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.47216 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.43410 * 52.45880 * 9 8 6 11 11 C 1.54266 * 110.48657 * 174.99964 * 9 8 6 12 12 C 1.53867 * 106.59916 * 142.42062 * 11 9 8 13 13 C 1.54266 * 106.59914 * 359.97438 * 12 11 9 14 14 F 1.39905 * 110.48641 * 95.06888 * 13 12 11 15 15 F 1.39902 * 110.48987 * 217.57821 * 13 12 11 16 16 C 1.54891 * 104.31470 * 336.32440 * 13 12 11 17 17 C 1.46902 * 110.99764 * 123.95672 * 2 1 3 18 18 C 1.50702 * 109.47155 * 66.04434 * 17 2 1 19 19 O 1.21292 * 120.00077 * 0.02562 * 18 17 2 20 20 N 1.34770 * 119.99737 * 179.97438 * 18 17 2 21 21 C 1.37103 * 120.00049 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99655 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00044 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99830 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47227 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47115 * 120.00024 * 25 23 21 28 28 H 1.48497 * 109.47401 * 240.00199 * 25 23 21 29 29 H 1.09000 * 109.46984 * 59.99868 * 1 2 3 30 30 H 1.08997 * 109.47488 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47163 * 300.00271 * 1 2 3 32 32 H 1.08999 * 109.47240 * 173.95554 * 3 2 1 33 33 H 1.08995 * 109.46968 * 53.95273 * 3 2 1 34 34 H 1.08999 * 109.46919 * 60.00077 * 4 3 2 35 35 H 1.08995 * 109.47273 * 299.99807 * 4 3 2 36 36 H 0.97004 * 120.00324 * 359.97438 * 5 4 3 37 37 H 1.08999 * 109.47314 * 59.99819 * 8 6 5 38 38 H 1.08999 * 109.47401 * 299.99334 * 8 6 5 39 39 H 1.08999 * 110.03060 * 23.13160 * 11 9 8 40 40 H 1.09000 * 110.07079 * 261.72915 * 11 9 8 41 41 H 1.09001 * 110.03344 * 240.71511 * 12 11 9 42 42 H 1.08996 * 110.07527 * 119.30580 * 12 11 9 43 43 H 1.08990 * 110.75966 * 156.31853 * 16 13 12 44 44 H 1.09005 * 110.75413 * 279.69462 * 16 13 12 45 45 H 1.09000 * 109.46750 * 186.04100 * 17 2 1 46 46 H 1.08997 * 109.47020 * 306.04119 * 17 2 1 47 47 H 0.96999 * 120.00246 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99987 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3185 6 6 1.9560 4.2240 -2.3850 7 8 1.3402 3.8109 -3.3447 8 6 2.4961 5.6308 -2.3850 9 6 2.1323 6.3168 -3.7034 10 1 1.0619 6.2352 -3.8921 11 6 2.5648 7.7974 -3.6789 12 6 3.0697 8.1313 -5.0935 13 6 2.9270 6.8418 -5.9281 14 9 1.7178 6.8453 -6.6318 15 9 4.0048 6.7075 -6.8099 16 6 2.9402 5.7028 -4.8785 17 6 1.9954 -0.7661 1.1376 18 6 1.6368 -2.2205 0.9728 19 8 1.0053 -2.5833 0.0029 20 7 2.0187 -3.1182 1.9026 21 6 1.6930 -4.4414 1.7525 22 1 1.1307 -4.7645 0.8889 23 6 2.0872 -5.3670 2.7109 24 7 2.7718 -4.9740 3.7615 25 14 1.6427 -7.1698 2.5067 26 1 0.8745 -7.3509 1.2488 27 1 2.8844 -7.9823 2.4490 28 1 0.8164 -7.6097 3.6595 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0798 1.3443 0.1082 33 1 1.5612 1.9273 0.8309 34 1 0.5473 2.0845 -1.4265 35 1 2.0659 1.5015 -2.1492 36 1 2.6493 3.7555 -0.5508 37 1 3.5804 5.6037 -2.2771 38 1 2.0620 6.1867 -1.5540 39 1 3.3653 7.9406 -2.9532 40 1 1.7147 8.4313 -3.4265 41 1 4.1154 8.4365 -5.0544 42 1 2.4649 8.9269 -5.5285 43 1 2.4450 4.8133 -5.2675 44 1 3.9602 5.4745 -4.5691 45 1 3.0797 -0.6612 1.1755 46 1 1.5611 -0.3873 2.0628 47 1 2.5247 -2.8282 2.6777 48 1 3.0467 -5.6202 4.4307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267199758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:51 Heat of formation + Delta-G solvation = -181.090355 kcal Electronic energy + Delta-G solvation = -29694.164269 eV Core-core repulsion = 25033.235292 eV Total energy + Delta-G solvation = -4660.928977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.16429 -47.29447 -40.20867 -38.72216 -37.85868 -36.76020 -34.69368 -33.82573 -31.90403 -31.26628 -29.63063 -29.00266 -27.74549 -26.35557 -25.13231 -23.72781 -21.59546 -21.28482 -21.09431 -20.30698 -19.19127 -17.98062 -17.86547 -17.42194 -16.97540 -16.52674 -16.29575 -15.98767 -15.84317 -15.44407 -15.12881 -14.64915 -14.63596 -14.48204 -14.21864 -14.02296 -13.84482 -13.62747 -13.54747 -13.44442 -13.26813 -13.08209 -12.77319 -12.24430 -12.16000 -12.13929 -11.92331 -11.78708 -11.62602 -11.53289 -11.41312 -11.30447 -11.09596 -11.06875 -10.97080 -10.93700 -10.34917 -10.23979 -10.06966 -9.50384 -9.25233 -8.50451 -8.00933 -7.91419 -6.43417 -3.84126 2.39682 2.81306 3.15471 3.26374 3.33666 3.35013 3.49489 3.73585 3.88069 3.93069 4.02834 4.24233 4.38593 4.46871 4.54899 4.65394 4.75968 4.81675 4.87549 4.93681 5.03915 5.09860 5.10208 5.15390 5.22952 5.26159 5.32956 5.35311 5.51966 5.60411 5.65888 5.66651 5.80504 5.81090 5.86677 5.89899 5.97746 6.19279 6.25588 6.53292 7.15201 7.23917 7.29938 7.54252 7.98254 8.05079 8.60053 9.16866 9.52587 10.04356 10.74380 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.001407 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.101219 B =19893.325366 C =20168.435763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.730 5.730 6 C 0.509 3.491 7 O -0.534 6.534 8 C -0.133 4.133 9 C -0.076 4.076 10 H 0.095 0.905 11 C -0.118 4.118 12 C -0.161 4.161 13 C 0.275 3.725 14 F -0.194 7.194 15 F -0.200 7.200 16 C -0.153 4.153 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 29.452 -8.165 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.383 5.383 6 C 0.295 3.705 7 O -0.410 6.410 8 C -0.173 4.173 9 C -0.095 4.095 10 H 0.114 0.886 11 C -0.156 4.156 12 C -0.199 4.199 13 C 0.239 3.761 14 F -0.175 7.175 15 F -0.181 7.181 16 C -0.190 4.190 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.596 28.534 -9.836 30.293 hybrid contribution 0.214 -0.210 1.513 1.542 sum 2.809 28.324 -8.323 29.655 Atomic orbital electron populations 1.22627 0.86457 1.04783 0.99096 1.61442 1.08966 1.10430 1.43109 1.22252 1.00712 0.89809 0.95655 1.21345 0.99614 0.80700 0.98628 1.45981 1.58047 1.14505 1.19727 1.20623 0.79994 0.87481 0.82430 1.90739 1.40576 1.75730 1.33996 1.21728 1.02962 0.93128 0.99443 1.21767 1.01596 0.93325 0.92800 0.88649 1.22187 1.01910 0.95932 0.95560 1.23111 1.04672 0.96021 0.96094 1.22001 0.71470 0.98918 0.83692 1.93021 1.45754 1.97553 1.81188 1.93003 1.55780 1.96981 1.72336 1.23611 1.03094 0.97865 0.94480 1.21869 1.00659 0.94260 0.91623 1.19704 0.85551 0.86598 0.85287 1.90497 1.43858 1.80088 1.31543 1.41867 1.49402 1.07378 1.21460 1.19760 1.32843 0.82231 1.07940 0.87817 1.25257 0.96801 1.00587 0.95302 1.69619 1.38138 1.35670 1.10941 0.85799 0.78217 0.81898 0.78435 1.19199 1.20754 1.20789 0.91856 0.88353 0.96630 0.90314 0.94609 0.91162 0.90253 0.76724 0.88412 0.88227 0.90231 0.90316 0.88550 0.89123 0.87795 0.88575 0.89328 0.93356 0.77517 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.83 16 2 N -0.52 -8.21 4.50 -244.37 -1.10 -9.31 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.35 5.60 -4.04 -0.02 1.33 16 5 N -0.73 -5.89 5.56 -60.30 -0.33 -6.23 16 6 C 0.51 4.63 7.65 -10.99 -0.08 4.55 16 7 O -0.53 -7.25 14.74 5.56 0.08 -7.16 16 8 C -0.13 -0.64 5.06 -27.88 -0.14 -0.78 16 9 C -0.08 -0.46 2.45 -88.75 -0.22 -0.68 16 10 H 0.10 0.76 7.90 -51.93 -0.41 0.35 16 11 C -0.12 -0.45 6.37 -25.62 -0.16 -0.61 16 12 C -0.16 -0.82 6.41 -25.62 -0.16 -0.98 16 13 C 0.28 2.30 2.48 -25.07 -0.06 2.24 16 14 F -0.19 -2.07 17.17 2.25 0.04 -2.03 16 15 F -0.20 -1.99 17.16 2.25 0.04 -1.95 16 16 C -0.15 -1.19 5.36 -24.53 -0.13 -1.32 16 17 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 18 C 0.44 10.26 7.47 -10.99 -0.08 10.18 16 19 O -0.58 -15.34 13.91 5.55 0.08 -15.26 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 30 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 33 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 1.94 8.47 -40.82 -0.35 1.59 16 37 H 0.10 0.29 8.03 -51.93 -0.42 -0.13 16 38 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.17 7.84 -51.93 -0.41 -0.23 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.38 8.11 -51.93 -0.42 -0.04 16 42 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.10 1.07 7.30 -51.93 -0.38 0.69 16 44 H 0.10 0.62 7.98 -51.93 -0.41 0.20 16 45 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 46 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 47 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -34.20 396.39 -7.78 -41.99 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.39 Total: 7.65 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.82 Total: 8.11 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.77 Total: -53.19 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.16 Total: -22.43 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.20 -7.78 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267199758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.101 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds