Wall clock time and date at job start Wed Apr 1 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00251 * 2 1 4 4 C 1.53003 * 109.46963 * 293.95280 * 3 2 1 5 5 N 1.46500 * 109.46755 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00169 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99624 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.47216 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.43410 * 52.45880 * 9 8 6 11 11 C 1.54266 * 110.48657 * 174.99964 * 9 8 6 12 12 C 1.53867 * 106.59916 * 142.42062 * 11 9 8 13 13 C 1.54266 * 106.59914 * 359.97438 * 12 11 9 14 14 F 1.39905 * 110.48641 * 95.06888 * 13 12 11 15 15 F 1.39902 * 110.48987 * 217.57821 * 13 12 11 16 16 C 1.54891 * 104.31470 * 336.32440 * 13 12 11 17 17 C 1.46902 * 110.99764 * 123.95672 * 2 1 3 18 18 C 1.50702 * 109.47155 * 66.04434 * 17 2 1 19 19 O 1.21292 * 120.00077 * 0.02562 * 18 17 2 20 20 N 1.34770 * 119.99737 * 179.97438 * 18 17 2 21 21 C 1.37103 * 120.00049 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99655 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00044 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99830 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47227 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47115 * 120.00024 * 25 23 21 28 28 H 1.48497 * 109.47401 * 240.00199 * 25 23 21 29 29 H 1.09000 * 109.46984 * 59.99868 * 1 2 3 30 30 H 1.08997 * 109.47488 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47163 * 300.00271 * 1 2 3 32 32 H 1.08999 * 109.47240 * 173.95554 * 3 2 1 33 33 H 1.08995 * 109.46968 * 53.95273 * 3 2 1 34 34 H 1.08999 * 109.46919 * 60.00077 * 4 3 2 35 35 H 1.08995 * 109.47273 * 299.99807 * 4 3 2 36 36 H 0.97004 * 120.00324 * 359.97438 * 5 4 3 37 37 H 1.08999 * 109.47314 * 59.99819 * 8 6 5 38 38 H 1.08999 * 109.47401 * 299.99334 * 8 6 5 39 39 H 1.08999 * 110.03060 * 23.13160 * 11 9 8 40 40 H 1.09000 * 110.07079 * 261.72915 * 11 9 8 41 41 H 1.09001 * 110.03344 * 240.71511 * 12 11 9 42 42 H 1.08996 * 110.07527 * 119.30580 * 12 11 9 43 43 H 1.08990 * 110.75966 * 156.31853 * 16 13 12 44 44 H 1.09005 * 110.75413 * 279.69462 * 16 13 12 45 45 H 1.09000 * 109.46750 * 186.04100 * 17 2 1 46 46 H 1.08997 * 109.47020 * 306.04119 * 17 2 1 47 47 H 0.96999 * 120.00246 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99987 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3185 6 6 1.9560 4.2240 -2.3850 7 8 1.3402 3.8109 -3.3447 8 6 2.4961 5.6308 -2.3850 9 6 2.1323 6.3168 -3.7034 10 1 1.0619 6.2352 -3.8921 11 6 2.5648 7.7974 -3.6789 12 6 3.0697 8.1313 -5.0935 13 6 2.9270 6.8418 -5.9281 14 9 1.7178 6.8453 -6.6318 15 9 4.0048 6.7075 -6.8099 16 6 2.9402 5.7028 -4.8785 17 6 1.9954 -0.7661 1.1376 18 6 1.6368 -2.2205 0.9728 19 8 1.0053 -2.5833 0.0029 20 7 2.0187 -3.1182 1.9026 21 6 1.6930 -4.4414 1.7525 22 1 1.1307 -4.7645 0.8889 23 6 2.0872 -5.3670 2.7109 24 7 2.7718 -4.9740 3.7615 25 14 1.6427 -7.1698 2.5067 26 1 0.8745 -7.3509 1.2488 27 1 2.8844 -7.9823 2.4490 28 1 0.8164 -7.6097 3.6595 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0798 1.3443 0.1082 33 1 1.5612 1.9273 0.8309 34 1 0.5473 2.0845 -1.4265 35 1 2.0659 1.5015 -2.1492 36 1 2.6493 3.7555 -0.5508 37 1 3.5804 5.6037 -2.2771 38 1 2.0620 6.1867 -1.5540 39 1 3.3653 7.9406 -2.9532 40 1 1.7147 8.4313 -3.4265 41 1 4.1154 8.4365 -5.0544 42 1 2.4649 8.9269 -5.5285 43 1 2.4450 4.8133 -5.2675 44 1 3.9602 5.4745 -4.5691 45 1 3.0797 -0.6612 1.1755 46 1 1.5611 -0.3873 2.0628 47 1 2.5247 -2.8282 2.6777 48 1 3.0467 -5.6202 4.4307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267199758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:48 Heat of formation + Delta-G solvation = -206.971678 kcal Electronic energy + Delta-G solvation = -29695.286567 eV Core-core repulsion = 25033.235292 eV Total energy + Delta-G solvation = -4662.051275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.88353 -48.03972 -40.93641 -40.34795 -38.54548 -37.95584 -35.99418 -35.43907 -33.27211 -32.43759 -30.58340 -29.57519 -29.06933 -27.23167 -26.58568 -25.00673 -22.35431 -22.18912 -21.68496 -20.99244 -20.85440 -19.84955 -18.65425 -18.12633 -17.77429 -17.56854 -17.21215 -17.07873 -16.77254 -16.54673 -16.23733 -16.12861 -15.78175 -15.45559 -15.18780 -15.14145 -15.00487 -14.56139 -14.49407 -14.37871 -14.36582 -13.84981 -13.77731 -13.45825 -13.42328 -13.03967 -12.92686 -12.67995 -12.59452 -12.56089 -12.52181 -12.39098 -12.25604 -12.17694 -12.11550 -12.03403 -11.50390 -11.45992 -11.43129 -10.83448 -10.28369 -10.05553 -9.98437 -9.23175 -8.45961 -5.94050 1.36695 1.42233 1.55926 1.72090 2.06835 2.07458 2.31377 2.78082 2.92056 2.98602 3.21264 3.24726 3.42212 3.44137 3.81505 3.91043 4.02680 4.07895 4.11134 4.25916 4.26571 4.33550 4.36928 4.43524 4.47898 4.53649 4.62015 4.64003 4.66334 4.71196 4.82103 4.83293 4.91992 4.96879 4.99422 5.04618 5.21164 5.26323 5.38203 5.42490 5.46173 5.86089 6.05464 6.18379 6.62184 6.63377 7.14947 7.35212 7.58541 8.15159 8.71565 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.001407 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.101219 B =19893.325366 C =20168.435763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.716 5.716 6 C 0.501 3.499 7 O -0.589 6.589 8 C -0.121 4.121 9 C -0.076 4.076 10 H 0.068 0.932 11 C -0.108 4.108 12 C -0.154 4.154 13 C 0.258 3.742 14 F -0.215 7.215 15 F -0.213 7.213 16 C -0.154 4.154 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 31.989 -5.918 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.369 5.369 6 C 0.289 3.711 7 O -0.469 6.469 8 C -0.160 4.160 9 C -0.095 4.095 10 H 0.086 0.914 11 C -0.145 4.145 12 C -0.192 4.192 13 C 0.222 3.778 14 F -0.196 7.196 15 F -0.194 7.194 16 C -0.192 4.192 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.257 0.743 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.259 31.116 -7.538 32.298 hybrid contribution -0.313 -0.978 0.726 1.258 sum 3.946 30.137 -6.812 31.149 Atomic orbital electron populations 1.22449 0.86990 1.02310 1.00533 1.61326 1.08834 1.13403 1.43076 1.22257 1.01836 0.87228 0.96135 1.21030 0.98492 0.82228 0.97817 1.45809 1.57679 1.13042 1.20417 1.21526 0.78984 0.89056 0.81498 1.90735 1.43050 1.77024 1.36044 1.21791 1.04777 0.89857 0.99603 1.21736 0.99770 0.95215 0.92747 0.91351 1.22196 1.03315 0.93762 0.95242 1.23157 1.06012 0.93950 0.96103 1.22589 0.70352 1.01320 0.83527 1.92974 1.47068 1.97759 1.81778 1.92969 1.56293 1.97209 1.72966 1.23610 1.03872 0.96451 0.95223 1.21734 1.02363 0.89816 0.93074 1.20866 0.83691 0.88983 0.83833 1.90480 1.45233 1.81521 1.33073 1.41923 1.50069 1.06961 1.22234 1.19674 1.34323 0.84164 1.08003 0.90534 1.25979 0.96297 1.04132 0.94719 1.69667 1.38158 1.37029 1.11195 0.84902 0.78237 0.77204 0.78179 1.20053 1.19639 1.19579 0.91038 0.92669 0.94557 0.88265 0.91949 0.92866 0.93199 0.74315 0.85272 0.84848 0.87144 0.89215 0.86787 0.88771 0.91487 0.86978 0.86653 0.90863 0.76918 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.96 127.69 1.14 1.94 16 2 N -0.54 -16.57 4.50 -927.06 -4.17 -20.74 16 3 C 0.05 1.04 5.07 86.30 0.44 1.48 16 4 C 0.13 2.76 5.60 86.38 0.48 3.24 16 5 N -0.72 -9.85 5.56 -463.07 -2.57 -12.42 16 6 C 0.50 8.43 7.65 87.65 0.67 9.10 16 7 O -0.59 -16.57 14.74 -3.03 -0.04 -16.62 16 8 C -0.12 -0.75 5.06 29.85 0.15 -0.60 16 9 C -0.08 -0.80 2.45 -9.59 -0.02 -0.82 16 10 H 0.07 1.10 7.90 -2.39 -0.02 1.08 16 11 C -0.11 -0.44 6.37 31.32 0.20 -0.24 16 12 C -0.15 -1.23 6.41 31.32 0.20 -1.03 16 13 C 0.26 4.31 2.48 31.67 0.08 4.39 16 14 F -0.21 -4.86 17.17 44.97 0.77 -4.09 16 15 F -0.21 -4.30 17.16 44.97 0.77 -3.53 16 16 C -0.15 -2.39 5.36 32.02 0.17 -2.22 16 17 C 0.06 1.97 5.45 85.56 0.47 2.44 16 18 C 0.44 20.55 7.47 87.66 0.66 21.21 16 19 O -0.62 -34.13 13.91 -3.07 -0.04 -34.18 16 20 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 21 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 24 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 25 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H 0.07 2.09 6.47 -2.39 -0.02 2.07 16 30 H 0.05 2.24 5.83 -2.39 -0.01 2.22 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 33 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 34 H 0.05 1.32 6.55 -2.39 -0.02 1.31 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 2.34 8.47 -92.71 -0.79 1.55 16 37 H 0.13 0.08 8.03 -2.39 -0.02 0.06 16 38 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.11 -0.15 7.84 -2.39 -0.02 -0.17 16 40 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.11 0.53 8.11 -2.39 -0.02 0.51 16 42 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 43 H 0.07 1.54 7.30 -2.39 -0.02 1.52 16 44 H 0.11 1.30 7.98 -2.38 -0.02 1.29 16 45 H 0.12 3.14 7.93 -2.39 -0.02 3.12 16 46 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 47 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -80.49 396.39 0.80 -79.70 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.52 Total: 25.50 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 5.92 Total: 20.74 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -8.08 Total: -112.49 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.09 Total: -50.79 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 1.54 Total: -7.62 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.49 0.80 -79.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267199758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.275 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds