Wall clock time and date at job start Wed Apr 1 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99926 * 2 1 4 4 C 1.52997 * 109.47411 * 66.04687 * 3 2 1 5 5 N 1.46499 * 109.47555 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 5 10 10 H 1.09010 * 110.43090 * 305.70178 * 9 8 6 11 11 C 1.54260 * 110.48588 * 183.16011 * 9 8 6 12 12 C 1.53880 * 106.59478 * 217.70876 * 11 9 8 13 13 C 1.54261 * 106.60017 * 0.02562 * 12 11 9 14 14 F 1.39898 * 110.48811 * 142.28998 * 13 12 11 15 15 F 1.39898 * 110.48658 * 264.79558 * 13 12 11 16 16 C 1.54888 * 110.48855 * 68.23787 * 9 8 6 17 17 C 1.46900 * 111.00227 * 236.04741 * 2 1 3 18 18 C 1.50703 * 109.46627 * 293.95022 * 17 2 1 19 19 O 1.21284 * 120.00321 * 0.02562 * 18 17 2 20 20 N 1.34786 * 119.99514 * 180.02562 * 18 17 2 21 21 C 1.37097 * 119.99388 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00671 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99595 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00121 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00049 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 90.00417 * 25 23 21 27 27 H 1.48493 * 109.47286 * 210.00576 * 25 23 21 28 28 H 1.48506 * 109.47329 * 330.00675 * 25 23 21 29 29 H 1.08999 * 109.47080 * 60.00072 * 1 2 3 30 30 H 1.08997 * 109.46676 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47085 * 300.00111 * 1 2 3 32 32 H 1.08998 * 109.47017 * 306.04257 * 3 2 1 33 33 H 1.09005 * 109.46806 * 186.04275 * 3 2 1 34 34 H 1.08998 * 109.47382 * 59.99793 * 4 3 2 35 35 H 1.09002 * 109.47216 * 300.00230 * 4 3 2 36 36 H 0.97000 * 119.99484 * 359.97438 * 5 4 3 37 37 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 39 39 H 1.08993 * 110.03433 * 336.99064 * 11 9 8 40 40 H 1.08998 * 110.03308 * 98.38133 * 11 9 8 41 41 H 1.09002 * 110.02792 * 119.28729 * 12 11 9 42 42 H 1.09005 * 110.03198 * 240.66585 * 12 11 9 43 43 H 1.09001 * 110.75714 * 274.93887 * 16 9 8 44 44 H 1.09003 * 110.75469 * 38.30888 * 16 9 8 45 45 H 1.08998 * 109.47297 * 53.94938 * 17 2 1 46 46 H 1.08997 * 109.47246 * 173.95835 * 17 2 1 47 47 H 0.96997 * 119.99855 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1559 3.4254 1.3180 6 6 1.9554 4.2242 2.3848 7 8 1.3403 3.8107 3.3449 8 6 2.4895 5.6334 2.3820 9 6 2.1213 6.3210 3.6982 10 1 1.0464 6.2634 3.8699 11 6 2.5886 7.7911 3.6885 12 6 3.0821 8.1048 5.1118 13 6 2.8981 6.8143 5.9365 14 9 3.9620 6.6480 6.8297 15 9 1.6814 6.8433 6.6264 16 6 2.8938 5.6814 4.8786 17 6 1.9955 -0.7659 -1.1376 18 6 1.6370 -2.2204 -0.9727 19 8 1.0048 -2.5831 -0.0034 20 7 2.0191 -3.1182 -1.9027 21 6 1.6925 -4.4412 -1.7530 22 1 1.1295 -4.7642 -0.8898 23 6 2.0868 -5.3668 -2.7114 24 7 1.7742 -6.6351 -2.5677 25 14 3.0611 -4.8084 -4.2040 26 1 4.5133 -4.8755 -3.9007 27 1 2.7544 -5.6946 -5.3553 28 1 2.6904 -3.4108 -4.5427 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0797 1.3444 -0.1082 34 1 2.0658 1.5016 2.1492 35 1 0.5472 2.0845 1.4265 36 1 2.6482 3.7559 0.5503 37 1 3.5741 5.6106 2.2750 38 1 2.0538 6.1854 1.5494 39 1 3.4020 7.9196 2.9745 40 1 1.7567 8.4456 3.4283 41 1 4.1351 8.3857 5.0884 42 1 2.4901 8.9123 5.5428 43 1 2.3689 4.8024 5.2527 44 1 3.9116 5.4279 4.5821 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5244 -2.8280 -2.6781 48 1 2.0491 -7.2812 -3.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267199760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:58 Heat of formation + Delta-G solvation = -173.638024 kcal Electronic energy + Delta-G solvation = -29761.947512 eV Core-core repulsion = 25101.341692 eV Total energy + Delta-G solvation = -4660.605820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.17426 -47.30529 -40.25424 -38.88370 -37.90684 -36.87276 -34.75263 -33.88606 -31.93738 -31.69548 -29.72444 -29.02733 -27.90209 -26.40080 -25.15892 -23.62215 -21.61224 -21.32590 -21.11418 -20.33278 -19.38327 -18.30015 -17.98696 -17.44390 -16.98140 -16.57901 -16.35845 -16.02359 -15.86144 -15.47492 -15.19972 -14.96391 -14.64027 -14.48519 -14.30795 -14.02042 -13.80245 -13.67537 -13.63177 -13.43072 -13.14635 -13.09851 -12.80566 -12.46403 -12.27509 -12.15323 -12.09289 -11.92823 -11.80093 -11.66989 -11.53432 -11.40907 -11.15436 -11.10469 -11.07041 -10.95260 -10.62226 -10.10045 -9.99305 -9.56282 -9.29458 -8.63204 -8.20436 -8.04682 -6.32628 -3.84172 2.36183 2.76568 2.99628 3.04501 3.12974 3.33571 3.47694 3.70639 3.72534 3.90636 3.98081 4.08356 4.34434 4.44332 4.53391 4.63448 4.68858 4.73803 4.79847 4.85839 4.93873 5.01886 5.07845 5.13184 5.18648 5.24343 5.27921 5.31148 5.44691 5.50837 5.56212 5.65608 5.72882 5.78035 5.78468 5.78862 5.88168 5.93471 6.15253 6.47171 7.04165 7.17779 7.21154 7.56382 7.94601 8.12861 8.58289 8.93662 9.40478 9.81213 10.80470 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.001456 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.681754 B =19227.891387 C =19420.331546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.731 5.731 6 C 0.509 3.491 7 O -0.533 6.533 8 C -0.132 4.132 9 C -0.076 4.076 10 H 0.095 0.905 11 C -0.118 4.118 12 C -0.161 4.161 13 C 0.275 3.725 14 F -0.200 7.200 15 F -0.194 7.194 16 C -0.152 4.152 17 C 0.044 3.956 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.016 0.984 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 33.537 5.633 34.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.383 5.383 6 C 0.295 3.705 7 O -0.409 6.409 8 C -0.172 4.172 9 C -0.095 4.095 10 H 0.113 0.887 11 C -0.156 4.156 12 C -0.199 4.199 13 C 0.239 3.761 14 F -0.181 7.181 15 F -0.175 7.175 16 C -0.190 4.190 17 C -0.087 4.087 18 C 0.237 3.763 19 O -0.439 6.439 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.035 0.965 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.764 32.502 7.388 33.670 hybrid contribution 0.830 0.754 -2.305 2.563 sum 5.594 33.256 5.084 34.104 Atomic orbital electron populations 1.22645 0.86266 1.04893 0.99269 1.61433 1.09109 1.10557 1.42838 1.22254 1.00686 0.89685 0.95781 1.21342 0.99689 0.80727 0.98561 1.45973 1.58139 1.14488 1.19700 1.20630 0.79968 0.87502 0.82424 1.90742 1.40482 1.75773 1.33941 1.21731 1.02969 0.93054 0.99494 1.21698 1.01661 0.93337 0.92794 0.88702 1.22187 1.01837 0.96075 0.95479 1.23114 1.04624 0.96066 0.96113 1.22022 0.71588 0.98781 0.83697 1.93002 1.56774 1.96651 1.71650 1.93019 1.45171 1.97506 1.81823 1.23570 1.03296 0.97878 0.94291 1.21900 1.00772 0.94114 0.91915 1.19604 0.85223 0.86388 0.85045 1.90537 1.42534 1.79882 1.30935 1.42206 1.51030 1.08380 1.21422 1.19432 1.33828 0.80288 1.09815 0.86238 1.25039 0.97880 0.95128 0.98104 1.69618 1.45607 1.01143 1.35705 0.86671 0.80915 0.78652 0.83114 1.19608 1.20198 1.19586 0.96534 0.88293 0.91669 0.94563 0.90299 0.90190 0.91113 0.76748 0.88425 0.88240 0.90248 0.90316 0.88553 0.89111 0.87659 0.88642 0.93241 0.89193 0.79752 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.96 60.06 0.54 0.80 16 2 N -0.52 -7.78 4.50 -244.37 -1.10 -8.88 16 3 C 0.04 0.47 5.07 -3.82 -0.02 0.45 16 4 C 0.12 1.28 5.60 -4.04 -0.02 1.26 16 5 N -0.73 -5.53 5.56 -60.29 -0.33 -5.87 16 6 C 0.51 4.44 7.63 -10.98 -0.08 4.35 16 7 O -0.53 -7.05 14.61 5.55 0.08 -6.96 16 8 C -0.13 -0.60 5.05 -27.88 -0.14 -0.74 16 9 C -0.08 -0.45 2.45 -88.97 -0.22 -0.66 16 10 H 0.09 0.72 7.96 -51.92 -0.41 0.31 16 11 C -0.12 -0.43 6.38 -25.61 -0.16 -0.59 16 12 C -0.16 -0.80 6.42 -25.61 -0.16 -0.96 16 13 C 0.28 2.26 2.49 -25.02 -0.06 2.20 16 14 F -0.20 -1.97 17.17 2.25 0.04 -1.94 16 15 F -0.19 -2.05 17.17 2.25 0.04 -2.01 16 16 C -0.15 -1.17 5.29 -24.68 -0.13 -1.30 16 17 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 18 C 0.45 10.01 7.48 -10.98 -0.08 9.93 16 19 O -0.56 -14.63 13.91 5.55 0.08 -14.56 16 20 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16 21 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 25 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 31 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 32 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 36 H 0.40 1.72 8.47 -40.82 -0.35 1.38 16 37 H 0.10 0.25 8.06 -51.93 -0.42 -0.17 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.16 7.84 -51.93 -0.41 -0.25 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 0.36 8.11 -51.93 -0.42 -0.06 16 42 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.10 1.08 7.17 -51.93 -0.37 0.71 16 44 H 0.10 0.61 8.00 -51.93 -0.42 0.19 16 45 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.09 1.22 7.93 -51.93 -0.41 0.80 16 47 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -35.49 393.04 -7.44 -42.93 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.34 Total: 7.89 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.82 Total: 7.77 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.72 Total: -53.35 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.16 Total: -21.52 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.49 -7.44 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267199760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.711 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds