Wall clock time and date at job start Wed Apr 1 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99926 * 2 1 4 4 C 1.52997 * 109.47411 * 66.04687 * 3 2 1 5 5 N 1.46499 * 109.47555 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 5 10 10 H 1.09010 * 110.43090 * 305.70178 * 9 8 6 11 11 C 1.54260 * 110.48588 * 183.16011 * 9 8 6 12 12 C 1.53880 * 106.59478 * 217.70876 * 11 9 8 13 13 C 1.54261 * 106.60017 * 0.02562 * 12 11 9 14 14 F 1.39898 * 110.48811 * 142.28998 * 13 12 11 15 15 F 1.39898 * 110.48658 * 264.79558 * 13 12 11 16 16 C 1.54888 * 110.48855 * 68.23787 * 9 8 6 17 17 C 1.46900 * 111.00227 * 236.04741 * 2 1 3 18 18 C 1.50703 * 109.46627 * 293.95022 * 17 2 1 19 19 O 1.21284 * 120.00321 * 0.02562 * 18 17 2 20 20 N 1.34786 * 119.99514 * 180.02562 * 18 17 2 21 21 C 1.37097 * 119.99388 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00671 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99595 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00121 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00049 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 90.00417 * 25 23 21 27 27 H 1.48493 * 109.47286 * 210.00576 * 25 23 21 28 28 H 1.48506 * 109.47329 * 330.00675 * 25 23 21 29 29 H 1.08999 * 109.47080 * 60.00072 * 1 2 3 30 30 H 1.08997 * 109.46676 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47085 * 300.00111 * 1 2 3 32 32 H 1.08998 * 109.47017 * 306.04257 * 3 2 1 33 33 H 1.09005 * 109.46806 * 186.04275 * 3 2 1 34 34 H 1.08998 * 109.47382 * 59.99793 * 4 3 2 35 35 H 1.09002 * 109.47216 * 300.00230 * 4 3 2 36 36 H 0.97000 * 119.99484 * 359.97438 * 5 4 3 37 37 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 39 39 H 1.08993 * 110.03433 * 336.99064 * 11 9 8 40 40 H 1.08998 * 110.03308 * 98.38133 * 11 9 8 41 41 H 1.09002 * 110.02792 * 119.28729 * 12 11 9 42 42 H 1.09005 * 110.03198 * 240.66585 * 12 11 9 43 43 H 1.09001 * 110.75714 * 274.93887 * 16 9 8 44 44 H 1.09003 * 110.75469 * 38.30888 * 16 9 8 45 45 H 1.08998 * 109.47297 * 53.94938 * 17 2 1 46 46 H 1.08997 * 109.47246 * 173.95835 * 17 2 1 47 47 H 0.96997 * 119.99855 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1559 3.4254 1.3180 6 6 1.9554 4.2242 2.3848 7 8 1.3403 3.8107 3.3449 8 6 2.4895 5.6334 2.3820 9 6 2.1213 6.3210 3.6982 10 1 1.0464 6.2634 3.8699 11 6 2.5886 7.7911 3.6885 12 6 3.0821 8.1048 5.1118 13 6 2.8981 6.8143 5.9365 14 9 3.9620 6.6480 6.8297 15 9 1.6814 6.8433 6.6264 16 6 2.8938 5.6814 4.8786 17 6 1.9955 -0.7659 -1.1376 18 6 1.6370 -2.2204 -0.9727 19 8 1.0048 -2.5831 -0.0034 20 7 2.0191 -3.1182 -1.9027 21 6 1.6925 -4.4412 -1.7530 22 1 1.1295 -4.7642 -0.8898 23 6 2.0868 -5.3668 -2.7114 24 7 1.7742 -6.6351 -2.5677 25 14 3.0611 -4.8084 -4.2040 26 1 4.5133 -4.8755 -3.9007 27 1 2.7544 -5.6946 -5.3553 28 1 2.6904 -3.4108 -4.5427 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0797 1.3444 -0.1082 34 1 2.0658 1.5016 2.1492 35 1 0.5472 2.0845 1.4265 36 1 2.6482 3.7559 0.5503 37 1 3.5741 5.6106 2.2750 38 1 2.0538 6.1854 1.5494 39 1 3.4020 7.9196 2.9745 40 1 1.7567 8.4456 3.4283 41 1 4.1351 8.3857 5.0884 42 1 2.4901 8.9123 5.5428 43 1 2.3689 4.8024 5.2527 44 1 3.9116 5.4279 4.5821 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5244 -2.8280 -2.6781 48 1 2.0491 -7.2812 -3.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267199760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:55 Heat of formation + Delta-G solvation = -202.207073 kcal Electronic energy + Delta-G solvation = -29763.186359 eV Core-core repulsion = 25101.341692 eV Total energy + Delta-G solvation = -4661.844666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.88421 -48.04176 -40.94767 -40.46779 -38.57255 -37.98089 -36.02671 -35.45606 -33.74349 -32.44262 -30.64057 -29.58528 -29.13614 -27.24140 -26.52666 -24.90525 -22.32481 -22.18881 -21.67955 -21.23602 -20.87610 -20.16409 -18.65432 -18.11997 -17.76634 -17.56668 -17.21178 -17.09611 -16.79758 -16.72208 -16.26555 -16.09261 -15.56145 -15.49412 -15.23763 -15.14641 -14.84894 -14.57899 -14.52434 -14.45650 -14.38066 -14.18809 -13.85501 -13.71199 -13.41297 -13.09411 -12.93167 -12.68455 -12.59535 -12.56388 -12.51529 -12.39460 -12.25607 -12.16912 -12.03437 -11.96029 -11.50350 -11.45833 -11.43359 -10.82567 -10.36620 -10.21980 -10.04956 -9.23419 -8.39612 -6.00711 1.31052 1.37652 1.46343 1.72472 1.98469 2.07042 2.24980 2.75924 2.80858 2.97307 3.16221 3.24252 3.30835 3.42858 3.82183 3.91176 4.02478 4.08485 4.11784 4.14505 4.25878 4.33504 4.36347 4.43832 4.44798 4.48695 4.61213 4.62878 4.65958 4.71274 4.82624 4.83929 4.92879 4.97123 5.00097 5.04695 5.21368 5.26606 5.38232 5.46444 5.54695 5.88622 5.99951 6.16501 6.61562 6.63943 6.90774 7.36131 7.42083 8.00586 8.78231 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.001456 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.681754 B =19227.891387 C =19420.331546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.715 5.715 6 C 0.501 3.499 7 O -0.589 6.589 8 C -0.121 4.121 9 C -0.076 4.076 10 H 0.068 0.932 11 C -0.108 4.108 12 C -0.155 4.155 13 C 0.257 3.743 14 F -0.213 7.213 15 F -0.215 7.215 16 C -0.153 4.153 17 C 0.058 3.942 18 C 0.448 3.552 19 O -0.608 6.608 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.968 3.032 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 38.129 1.740 39.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.073 4.073 4 C 0.002 3.998 5 N -0.369 5.369 6 C 0.289 3.711 7 O -0.469 6.469 8 C -0.160 4.160 9 C -0.095 4.095 10 H 0.086 0.914 11 C -0.145 4.145 12 C -0.192 4.192 13 C 0.222 3.778 14 F -0.195 7.195 15 F -0.196 7.196 16 C -0.191 4.191 17 C -0.073 4.073 18 C 0.236 3.764 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.257 0.743 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.102 0.898 46 H 0.144 0.856 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.721 37.154 3.468 38.106 hybrid contribution -0.179 -0.722 -0.888 1.159 sum 7.542 36.432 2.579 37.294 Atomic orbital electron populations 1.22450 0.87078 1.02174 1.00691 1.61295 1.08782 1.13652 1.43278 1.22258 1.02012 0.87013 0.96044 1.21045 0.98448 0.82243 0.98017 1.45789 1.57725 1.13018 1.20345 1.21533 0.78960 0.89094 0.81535 1.90739 1.43013 1.77080 1.36055 1.21791 1.04835 0.89787 0.99582 1.21670 0.99893 0.95161 0.92753 0.91376 1.22197 1.03245 0.93976 0.95063 1.23161 1.05940 0.93940 0.96208 1.22624 0.70469 1.01224 0.83525 1.92967 1.57282 1.96896 1.72307 1.92972 1.46521 1.97709 1.82399 1.23562 1.03936 0.96516 0.95101 1.21832 1.03082 0.88870 0.93509 1.21003 0.82921 0.89071 0.83405 1.90532 1.44214 1.81516 1.32974 1.42017 1.51882 1.06695 1.22775 1.18989 1.34801 0.83248 1.08735 0.92967 1.26158 0.98693 0.94619 1.02089 1.69814 1.47285 1.03095 1.37559 0.85331 0.78935 0.80241 0.76770 1.18113 1.20233 1.15105 0.94150 0.92963 0.91228 0.91647 0.87883 0.93325 0.93031 0.74250 0.85227 0.84838 0.87121 0.89193 0.86804 0.88779 0.91437 0.87106 0.89813 0.85558 0.77409 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.96 127.69 1.14 1.87 16 2 N -0.55 -15.37 4.50 -927.06 -4.17 -19.54 16 3 C 0.05 0.92 5.07 86.30 0.44 1.36 16 4 C 0.13 2.54 5.60 86.38 0.48 3.02 16 5 N -0.72 -8.83 5.56 -463.06 -2.57 -11.41 16 6 C 0.50 7.94 7.63 87.66 0.67 8.61 16 7 O -0.59 -16.17 14.61 -3.04 -0.04 -16.22 16 8 C -0.12 -0.64 5.05 29.85 0.15 -0.49 16 9 C -0.08 -0.76 2.45 -9.72 -0.02 -0.78 16 10 H 0.07 1.05 7.96 -2.38 -0.02 1.03 16 11 C -0.11 -0.38 6.38 31.32 0.20 -0.18 16 12 C -0.15 -1.18 6.42 31.32 0.20 -0.98 16 13 C 0.26 4.24 2.49 31.71 0.08 4.32 16 14 F -0.21 -4.27 17.17 44.97 0.77 -3.50 16 15 F -0.21 -4.82 17.17 44.97 0.77 -4.05 16 16 C -0.15 -2.34 5.29 31.92 0.17 -2.18 16 17 C 0.06 1.64 5.45 85.56 0.47 2.10 16 18 C 0.45 19.82 7.48 87.66 0.66 20.47 16 19 O -0.61 -33.65 13.91 -3.04 -0.04 -33.69 16 20 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 21 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 22 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16 25 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 2.07 5.82 -2.39 -0.01 2.06 16 31 H 0.07 1.97 6.47 -2.39 -0.02 1.96 16 32 H 0.07 0.80 8.12 -2.39 -0.02 0.79 16 33 H 0.10 1.31 7.93 -2.38 -0.02 1.29 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.23 6.55 -2.39 -0.02 1.21 16 36 H 0.42 1.61 8.47 -92.71 -0.79 0.83 16 37 H 0.13 -0.05 8.06 -2.38 -0.02 -0.07 16 38 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.11 -0.22 7.84 -2.39 -0.02 -0.24 16 40 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.11 0.49 8.11 -2.39 -0.02 0.47 16 42 H 0.09 0.67 8.12 -2.38 -0.02 0.65 16 43 H 0.07 1.55 7.17 -2.39 -0.02 1.53 16 44 H 0.11 1.27 8.00 -2.39 -0.02 1.25 16 45 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 46 H 0.13 2.72 7.93 -2.39 -0.02 2.70 16 47 H 0.39 14.58 5.76 -92.71 -0.53 14.05 16 48 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -90.09 393.04 0.93 -89.16 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.38 Total: 26.19 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 5.95 Total: 18.33 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -8.00 Total: -116.07 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.09 Total: -49.91 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 1.54 Total: -7.55 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -90.09 0.93 -89.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267199760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.043 kcal (2) G-P(sol) polarization free energy of solvation -90.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds