Wall clock time and date at job start Wed Apr 1 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 293.94862 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.53002 * 110.43456 * 59.29874 * 8 6 5 10 10 F 1.39903 * 109.46799 * 60.70146 * 9 8 6 11 11 F 1.39898 * 109.46801 * 180.70028 * 9 8 6 12 12 C 1.54887 * 110.48517 * 296.75930 * 8 6 5 13 13 C 1.55235 * 102.58967 * 279.18673 * 12 8 6 14 14 C 1.54272 * 104.23154 * 322.08624 * 13 12 8 15 15 C 1.53877 * 106.59577 * 23.60899 * 14 13 12 16 16 C 1.46903 * 110.99788 * 123.94949 * 2 1 3 17 17 C 1.50702 * 109.46939 * 66.04774 * 16 2 1 18 18 O 1.21289 * 120.00260 * 359.97438 * 17 16 2 19 19 N 1.34784 * 119.99711 * 179.97438 * 17 16 2 20 20 C 1.37094 * 119.99407 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00829 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99455 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00520 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47179 * 89.99910 * 24 22 20 26 26 H 1.48498 * 109.47317 * 210.00141 * 24 22 20 27 27 H 1.48500 * 109.47409 * 330.00386 * 24 22 20 28 28 H 1.08999 * 109.46894 * 60.00348 * 1 2 3 29 29 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47121 * 300.00361 * 1 2 3 31 31 H 1.09001 * 109.46874 * 173.95142 * 3 2 1 32 32 H 1.08992 * 109.47407 * 53.95160 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00295 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00475 * 4 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.47022 * 300.70210 * 9 8 6 37 37 H 1.08996 * 110.76086 * 37.57654 * 12 8 6 38 38 H 1.08998 * 110.75806 * 160.95017 * 12 8 6 39 39 H 1.09002 * 110.47452 * 203.39296 * 13 12 8 40 40 H 1.09004 * 110.46933 * 80.77351 * 13 12 8 41 41 H 1.08999 * 110.02996 * 264.32259 * 14 13 12 42 42 H 1.09003 * 110.03053 * 142.89111 * 14 13 12 43 43 H 1.09001 * 110.02758 * 240.71107 * 15 14 13 44 44 H 1.09000 * 110.02677 * 119.28645 * 15 14 13 45 45 H 1.09005 * 109.47192 * 186.04416 * 16 2 1 46 46 H 1.08993 * 109.47271 * 306.04735 * 16 2 1 47 47 H 0.96996 * 120.00025 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00280 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 7 2.1560 3.4252 -1.3181 6 6 1.9546 4.2243 -2.3846 7 8 1.3396 3.8108 -3.3446 8 6 2.4946 5.6313 -2.3846 9 6 4.0154 5.6198 -2.2168 10 9 4.5967 4.9231 -3.2817 11 9 4.4929 6.9347 -2.2035 12 6 1.8316 6.4664 -1.2612 13 6 0.4744 6.8714 -1.8968 14 6 0.8160 7.1493 -3.3753 15 6 2.1005 6.3608 -3.6854 16 6 1.9954 -0.7659 1.1377 17 6 1.6369 -2.2204 0.9730 18 8 1.0046 -2.5832 0.0036 19 7 2.0188 -3.1181 1.9030 20 6 1.6922 -4.4411 1.7534 21 1 1.1292 -4.7642 0.8902 22 6 2.0864 -5.3666 2.7119 23 7 2.7718 -4.9737 3.7620 24 14 1.6420 -7.1695 2.5078 25 1 2.7182 -7.8624 1.7548 26 1 1.4910 -7.7966 3.8453 27 1 0.3636 -7.2827 1.7608 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5611 1.9274 0.8308 33 1 2.0659 1.5014 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6482 3.7559 -0.5504 36 1 4.2736 5.1299 -1.2779 37 1 1.6773 5.8599 -0.3688 38 1 2.4292 7.3485 -1.0316 39 1 0.0833 7.7702 -1.4201 40 1 -0.2424 6.0540 -1.8180 41 1 0.9869 8.2154 -3.5250 42 1 0.0038 6.8072 -4.0168 43 1 2.8947 7.0443 -3.9857 44 1 1.9116 5.6362 -4.4775 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5241 -2.8279 2.6784 48 1 3.0467 -5.6198 4.4313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267213674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:23 Heat of formation + Delta-G solvation = -176.195291 kcal Electronic energy + Delta-G solvation = -30890.467273 eV Core-core repulsion = 26229.750562 eV Total energy + Delta-G solvation = -4660.716711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.47108 -47.42987 -40.74909 -38.75659 -37.67618 -36.74463 -34.88139 -33.84760 -31.53711 -31.26173 -29.55658 -29.04115 -27.72507 -25.49384 -25.30153 -24.12492 -22.58336 -21.36698 -21.02283 -19.76414 -19.20288 -18.47229 -17.87754 -17.60896 -17.52284 -16.56034 -16.50258 -16.00406 -15.85208 -15.56401 -15.01415 -14.69956 -14.63660 -14.38584 -14.19217 -14.04126 -13.89316 -13.73794 -13.58494 -13.48499 -13.34492 -13.02128 -12.90373 -12.17393 -12.06602 -11.93199 -11.81089 -11.65042 -11.60481 -11.55484 -11.45256 -11.32311 -11.13231 -11.11184 -10.96390 -10.84739 -10.40675 -10.24129 -10.18739 -9.49959 -9.37513 -8.51998 -8.02045 -7.92834 -6.43806 -3.84533 2.11635 2.60251 3.16725 3.17760 3.25614 3.31340 3.56044 3.70966 3.81045 3.87481 4.02086 4.20872 4.27194 4.34379 4.51555 4.62028 4.76746 4.88316 4.90054 4.93429 5.02378 5.07412 5.16684 5.21991 5.22726 5.31133 5.47270 5.52104 5.57918 5.63444 5.70498 5.72927 5.76060 5.81816 5.87653 5.94021 5.94786 6.08098 6.24171 6.51236 7.03870 7.16155 7.26833 7.53558 7.80392 8.04147 8.59451 9.16193 9.51874 10.03628 10.73887 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.001758 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.715869 B =15922.887098 C =16303.068677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.727 5.727 6 C 0.532 3.468 7 O -0.514 6.514 8 C -0.140 4.140 9 C 0.279 3.721 10 F -0.194 7.194 11 F -0.195 7.195 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.108 4.108 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.015 0.985 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 27.580 -5.577 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.002 4.002 5 N -0.379 5.379 6 C 0.316 3.684 7 O -0.388 6.388 8 C -0.144 4.144 9 C 0.225 3.775 10 F -0.176 7.176 11 F -0.176 7.176 12 C -0.148 4.148 13 C -0.160 4.160 14 C -0.157 4.157 15 C -0.146 4.146 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.492 26.660 -7.239 27.629 hybrid contribution 0.357 -0.172 1.632 1.679 sum 0.849 26.488 -5.607 27.088 Atomic orbital electron populations 1.22631 0.86422 1.04826 0.99079 1.61440 1.08981 1.10292 1.43159 1.22253 1.00812 0.89926 0.95497 1.21407 0.99758 0.80096 0.98953 1.45934 1.57997 1.14626 1.19375 1.19681 0.80350 0.85643 0.82698 1.90732 1.39950 1.74437 1.33714 1.22868 0.93773 0.95726 1.02035 1.21618 0.89692 0.76353 0.89860 1.93048 1.85850 1.78779 1.59886 1.92991 1.89408 1.38078 1.97129 1.22675 0.97243 0.99443 0.95475 1.22409 0.96236 1.01850 0.95521 1.22079 0.97291 0.99967 0.96376 1.22129 0.98304 0.99088 0.95041 1.21870 1.00679 0.94277 0.91580 1.19696 0.85586 0.86583 0.85305 1.90496 1.43842 1.80078 1.31590 1.41861 1.49397 1.07375 1.21425 1.19700 1.32892 0.82248 1.07947 0.87878 1.25264 0.96814 1.00600 0.95300 1.69607 1.38039 1.35767 1.10939 0.85854 0.79124 0.81851 0.77442 1.20381 1.20960 1.19417 0.91867 0.88319 0.96613 0.90232 0.94513 0.89916 0.90885 0.76920 0.87019 0.90265 0.89078 0.90686 0.91193 0.91357 0.91104 0.90474 0.88988 0.89302 0.93331 0.77509 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.07 0.54 0.82 16 2 N -0.51 -8.05 4.50 -244.37 -1.10 -9.15 16 3 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 4 C 0.12 1.33 5.60 -4.04 -0.02 1.31 16 5 N -0.73 -6.10 5.26 -60.29 -0.32 -6.42 16 6 C 0.53 5.45 6.09 -10.98 -0.07 5.38 16 7 O -0.51 -7.42 15.43 5.56 0.09 -7.34 16 8 C -0.14 -1.06 0.44 -154.00 -0.07 -1.13 16 9 C 0.28 1.98 4.27 37.16 0.16 2.14 16 10 F -0.19 -1.98 16.90 2.25 0.04 -1.95 16 11 F -0.19 -1.50 15.80 2.25 0.04 -1.46 16 12 C -0.11 -0.58 5.79 -24.55 -0.14 -0.73 16 13 C -0.12 -0.75 6.62 -24.88 -0.16 -0.92 16 14 C -0.12 -0.83 6.80 -25.61 -0.17 -1.00 16 15 C -0.11 -0.90 5.50 -25.61 -0.14 -1.04 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.18 7.47 -10.98 -0.08 10.10 16 18 O -0.58 -15.24 13.91 5.55 0.08 -15.16 16 19 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.88 6.47 -51.93 -0.34 0.55 16 29 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 35 H 0.40 2.02 7.67 -40.82 -0.31 1.71 16 36 H 0.11 0.44 7.59 -51.93 -0.39 0.04 16 37 H 0.08 0.32 7.63 -51.93 -0.40 -0.08 16 38 H 0.09 0.40 7.42 -51.93 -0.39 0.01 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.60 7.29 -51.93 -0.38 0.22 16 44 H 0.09 0.97 6.86 -51.93 -0.36 0.61 16 45 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -33.51 391.87 -7.32 -40.83 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.24 Total: 8.11 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -0.45 Total: 8.31 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.75 Total: -53.11 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.51 -7.32 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267213674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.364 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds