Wall clock time and date at job start Wed Apr 1 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 293.94862 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.53002 * 110.43456 * 59.29874 * 8 6 5 10 10 F 1.39903 * 109.46799 * 60.70146 * 9 8 6 11 11 F 1.39898 * 109.46801 * 180.70028 * 9 8 6 12 12 C 1.54887 * 110.48517 * 296.75930 * 8 6 5 13 13 C 1.55235 * 102.58967 * 279.18673 * 12 8 6 14 14 C 1.54272 * 104.23154 * 322.08624 * 13 12 8 15 15 C 1.53877 * 106.59577 * 23.60899 * 14 13 12 16 16 C 1.46903 * 110.99788 * 123.94949 * 2 1 3 17 17 C 1.50702 * 109.46939 * 66.04774 * 16 2 1 18 18 O 1.21289 * 120.00260 * 359.97438 * 17 16 2 19 19 N 1.34784 * 119.99711 * 179.97438 * 17 16 2 20 20 C 1.37094 * 119.99407 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00829 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99455 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00520 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47179 * 89.99910 * 24 22 20 26 26 H 1.48498 * 109.47317 * 210.00141 * 24 22 20 27 27 H 1.48500 * 109.47409 * 330.00386 * 24 22 20 28 28 H 1.08999 * 109.46894 * 60.00348 * 1 2 3 29 29 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47121 * 300.00361 * 1 2 3 31 31 H 1.09001 * 109.46874 * 173.95142 * 3 2 1 32 32 H 1.08992 * 109.47407 * 53.95160 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00295 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00475 * 4 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.47022 * 300.70210 * 9 8 6 37 37 H 1.08996 * 110.76086 * 37.57654 * 12 8 6 38 38 H 1.08998 * 110.75806 * 160.95017 * 12 8 6 39 39 H 1.09002 * 110.47452 * 203.39296 * 13 12 8 40 40 H 1.09004 * 110.46933 * 80.77351 * 13 12 8 41 41 H 1.08999 * 110.02996 * 264.32259 * 14 13 12 42 42 H 1.09003 * 110.03053 * 142.89111 * 14 13 12 43 43 H 1.09001 * 110.02758 * 240.71107 * 15 14 13 44 44 H 1.09000 * 110.02677 * 119.28645 * 15 14 13 45 45 H 1.09005 * 109.47192 * 186.04416 * 16 2 1 46 46 H 1.08993 * 109.47271 * 306.04735 * 16 2 1 47 47 H 0.96996 * 120.00025 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00280 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 7 2.1560 3.4252 -1.3181 6 6 1.9546 4.2243 -2.3846 7 8 1.3396 3.8108 -3.3446 8 6 2.4946 5.6313 -2.3846 9 6 4.0154 5.6198 -2.2168 10 9 4.5967 4.9231 -3.2817 11 9 4.4929 6.9347 -2.2035 12 6 1.8316 6.4664 -1.2612 13 6 0.4744 6.8714 -1.8968 14 6 0.8160 7.1493 -3.3753 15 6 2.1005 6.3608 -3.6854 16 6 1.9954 -0.7659 1.1377 17 6 1.6369 -2.2204 0.9730 18 8 1.0046 -2.5832 0.0036 19 7 2.0188 -3.1181 1.9030 20 6 1.6922 -4.4411 1.7534 21 1 1.1292 -4.7642 0.8902 22 6 2.0864 -5.3666 2.7119 23 7 2.7718 -4.9737 3.7620 24 14 1.6420 -7.1695 2.5078 25 1 2.7182 -7.8624 1.7548 26 1 1.4910 -7.7966 3.8453 27 1 0.3636 -7.2827 1.7608 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5611 1.9274 0.8308 33 1 2.0659 1.5014 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6482 3.7559 -0.5504 36 1 4.2736 5.1299 -1.2779 37 1 1.6773 5.8599 -0.3688 38 1 2.4292 7.3485 -1.0316 39 1 0.0833 7.7702 -1.4201 40 1 -0.2424 6.0540 -1.8180 41 1 0.9869 8.2154 -3.5250 42 1 0.0038 6.8072 -4.0168 43 1 2.8947 7.0443 -3.9857 44 1 1.9116 5.6362 -4.4775 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5241 -2.8279 2.6784 48 1 3.0467 -5.6198 4.4313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267213674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:19 Heat of formation + Delta-G solvation = -201.226917 kcal Electronic energy + Delta-G solvation = -30891.552726 eV Core-core repulsion = 26229.750562 eV Total energy + Delta-G solvation = -4661.802164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.07647 -48.05517 -41.51187 -40.36999 -38.55511 -37.88171 -36.06798 -35.60832 -33.26532 -32.19767 -30.44919 -29.72556 -29.01036 -27.02769 -25.92144 -25.49087 -23.41282 -22.38764 -21.57633 -20.97652 -20.48725 -19.84384 -19.11061 -18.21944 -18.12341 -17.77935 -17.36913 -17.14684 -16.81047 -16.56565 -16.33351 -16.14531 -15.81940 -15.42034 -15.30786 -15.02389 -14.93982 -14.66116 -14.56005 -14.41672 -14.29879 -14.01805 -13.76802 -13.48985 -13.44362 -13.03722 -12.95360 -12.59876 -12.57722 -12.54365 -12.39988 -12.33649 -12.22908 -12.14942 -12.09172 -12.08153 -11.68820 -11.44906 -11.41838 -11.02241 -10.28013 -10.22274 -9.97998 -9.22394 -8.45318 -5.93237 1.34777 1.38344 1.42279 1.54336 1.80676 2.08263 2.30288 2.60383 2.85340 3.09426 3.14322 3.21925 3.29663 3.44727 3.67966 3.80799 3.86429 3.95647 4.06476 4.13850 4.26705 4.35602 4.37751 4.39510 4.47441 4.50632 4.54702 4.64611 4.65045 4.66592 4.78875 4.85273 4.93897 4.98531 5.02523 5.15524 5.18451 5.22077 5.26006 5.39797 5.42819 5.86219 6.05868 6.18213 6.38025 6.63217 7.07490 7.15490 7.59372 8.15954 8.71941 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.001758 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.715869 B =15922.887098 C =16303.068677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.709 5.709 6 C 0.531 3.469 7 O -0.565 6.565 8 C -0.136 4.136 9 C 0.274 3.726 10 F -0.216 7.216 11 F -0.196 7.196 12 C -0.103 4.103 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.112 4.112 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.418 0.582 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.075 0.925 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 29.530 -3.387 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.362 5.362 6 C 0.317 3.683 7 O -0.443 6.443 8 C -0.140 4.140 9 C 0.220 3.780 10 F -0.198 7.198 11 F -0.177 7.177 12 C -0.140 4.140 13 C -0.161 4.161 14 C -0.158 4.158 15 C -0.150 4.150 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.255 0.745 36 H 0.171 0.829 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.583 28.651 -5.001 29.127 hybrid contribution 0.004 -0.708 0.863 1.117 sum 1.587 27.943 -4.137 28.292 Atomic orbital electron populations 1.22456 0.86900 1.02334 1.00605 1.61311 1.08889 1.13242 1.43111 1.22265 1.02019 0.87382 0.95937 1.21136 0.98902 0.81097 0.98337 1.45703 1.57438 1.13364 1.19729 1.20158 0.79469 0.86597 0.82125 1.90720 1.42294 1.75580 1.35657 1.22845 0.94524 0.93994 1.02646 1.22028 0.88896 0.76390 0.90662 1.93009 1.86166 1.79306 1.61288 1.92987 1.89319 1.38300 1.97135 1.22753 0.96353 0.99925 0.94960 1.22426 0.96600 1.02161 0.94934 1.22095 0.96054 1.00588 0.97047 1.22119 0.99264 0.98694 0.94919 1.21735 1.02388 0.89777 0.93083 1.20876 0.83674 0.88999 0.83821 1.90479 1.45176 1.81523 1.33094 1.41923 1.50113 1.06962 1.22232 1.19621 1.34261 0.84182 1.07977 0.90520 1.25988 0.96380 1.04139 0.94769 1.69658 1.38132 1.37062 1.11200 0.84967 0.78570 0.77204 0.77836 1.19793 1.19521 1.19945 0.90936 0.92723 0.94469 0.88138 0.91560 0.92718 0.92117 0.74455 0.82941 0.88217 0.87241 0.88725 0.92862 0.89750 0.92589 0.90071 0.92087 0.86640 0.90765 0.76921 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 8.96 127.69 1.14 1.91 16 2 N -0.54 -15.97 4.50 -927.04 -4.17 -20.14 16 3 C 0.05 0.95 5.07 86.30 0.44 1.39 16 4 C 0.13 2.66 5.60 86.38 0.48 3.14 16 5 N -0.71 -10.20 5.26 -463.05 -2.44 -12.64 16 6 C 0.53 10.40 6.09 87.66 0.53 10.94 16 7 O -0.56 -16.91 15.43 -3.02 -0.05 -16.96 16 8 C -0.14 -1.83 0.44 -51.85 -0.02 -1.85 16 9 C 0.27 3.21 4.27 71.98 0.31 3.51 16 10 F -0.22 -4.21 16.90 44.97 0.76 -3.45 16 11 F -0.20 -2.49 15.80 44.97 0.71 -1.78 16 12 C -0.10 -0.74 5.79 32.01 0.19 -0.56 16 13 C -0.12 -1.27 6.62 31.79 0.21 -1.06 16 14 C -0.12 -1.59 6.80 31.32 0.21 -1.38 16 15 C -0.11 -1.87 5.50 31.32 0.17 -1.69 16 16 C 0.06 1.92 5.45 85.56 0.47 2.39 16 17 C 0.44 20.28 7.47 87.66 0.66 20.93 16 18 O -0.62 -33.70 13.91 -3.06 -0.04 -33.74 16 19 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 20 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 28 H 0.07 2.02 6.47 -2.39 -0.02 2.01 16 29 H 0.05 2.17 5.82 -2.38 -0.01 2.15 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.48 7.93 -2.39 -0.02 1.46 16 32 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.41 6.55 -2.39 -0.02 1.40 16 35 H 0.42 2.47 7.67 -92.71 -0.71 1.75 16 36 H 0.15 0.53 7.59 -2.39 -0.02 0.52 16 37 H 0.10 0.35 7.63 -2.39 -0.02 0.33 16 38 H 0.11 0.48 7.42 -2.39 -0.02 0.46 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.24 7.29 -2.39 -0.02 1.22 16 44 H 0.06 1.40 6.86 -2.39 -0.02 1.38 16 45 H 0.12 3.06 7.93 -2.38 -0.02 3.04 16 46 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 47 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 48 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -77.17 391.87 1.09 -76.09 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.44 Total: 27.12 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.07 Total: 19.65 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -7.95 Total: -111.76 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.09 Total: -50.70 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 1.47 Total: -5.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -77.17 1.09 -76.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267213674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.140 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds