Wall clock time and date at job start Wed Apr 1 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 119.99958 * 2 1 4 4 C 1.52994 * 109.47551 * 89.99231 * 3 2 1 5 5 N 1.46901 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99838 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46616 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00754 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99812 * 179.97438 * 7 6 5 10 10 C 1.37090 * 119.99978 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00147 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00211 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99656 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.46776 * 89.99682 * 14 12 10 16 16 H 1.48491 * 109.47196 * 209.99670 * 14 12 10 17 17 H 1.48498 * 109.47352 * 330.00149 * 14 12 10 18 18 C 1.34777 * 120.00029 * 179.97438 * 2 1 3 19 19 O 1.21284 * 119.99593 * 184.74308 * 18 2 1 20 20 C 1.50701 * 119.99987 * 4.74556 * 18 2 1 21 21 H 1.08998 * 109.46679 * 46.11575 * 20 18 2 22 22 C 1.52994 * 109.47034 * 286.11759 * 20 18 2 23 23 C 1.53005 * 109.47011 * 180.02562 * 22 20 18 24 24 C 1.52995 * 109.46895 * 59.99947 * 23 22 20 25 25 C 1.52994 * 109.47334 * 299.99855 * 24 23 22 26 26 F 1.39901 * 109.47543 * 300.00441 * 25 24 23 27 27 F 1.39898 * 109.47412 * 180.02562 * 25 24 23 28 28 C 1.52995 * 109.46793 * 166.11754 * 20 18 2 29 29 H 1.08996 * 109.46624 * 84.60437 * 1 2 3 30 30 H 1.08999 * 109.46853 * 204.60051 * 1 2 3 31 31 H 1.08996 * 109.47351 * 324.60477 * 1 2 3 32 32 H 1.09001 * 109.46656 * 329.99505 * 3 2 1 33 33 H 1.09002 * 109.47042 * 209.99880 * 3 2 1 34 34 H 1.09005 * 109.46673 * 59.99989 * 4 3 2 35 35 H 1.09002 * 109.47477 * 300.00382 * 4 3 2 36 36 H 1.00903 * 110.99797 * 303.95394 * 5 4 3 37 37 H 1.08994 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09003 * 109.46802 * 299.99537 * 6 5 4 39 39 H 0.97003 * 119.99930 * 0.02562 * 9 7 6 40 40 H 0.97005 * 120.00173 * 180.02562 * 13 12 10 41 41 H 1.09007 * 109.47359 * 300.00096 * 22 20 18 42 42 H 1.09003 * 109.47334 * 60.00416 * 22 20 18 43 43 H 1.09001 * 109.47111 * 299.99739 * 23 22 20 44 44 H 1.09000 * 109.46890 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.46869 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47654 * 60.00453 * 24 23 22 47 47 H 1.09000 * 109.47405 * 299.99715 * 28 20 18 48 48 H 1.09001 * 109.47411 * 59.99941 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7106 1.4424 5 7 3.1864 2.9831 1.4423 6 6 3.4500 3.4389 2.8138 7 6 4.2021 4.7441 2.7734 8 8 4.4906 5.2452 1.7072 9 7 4.5542 5.3548 3.9223 10 6 5.2388 6.5419 3.8856 11 1 5.4957 6.9881 2.9362 12 6 5.6014 7.1718 5.0699 13 7 6.2572 8.3099 5.0348 14 14 5.1564 6.4005 6.7121 15 1 6.2517 5.4970 7.1475 16 1 4.9641 7.4691 7.7250 17 1 3.9000 5.6219 6.5691 18 6 2.1390 -1.1672 0.0005 19 8 3.3487 -1.1689 0.0874 20 6 1.3893 -2.4701 -0.1069 21 1 0.6458 -2.3971 -0.9005 22 6 0.6902 -2.7672 1.2212 23 6 -0.0704 -4.0903 1.1123 24 6 0.9119 -5.2181 0.7896 25 6 1.6110 -4.9210 -0.5384 26 9 0.6568 -4.8279 -1.5573 27 9 2.5088 -5.9525 -0.8338 28 6 2.3711 -3.5981 -0.4299 29 1 -0.3632 0.0966 -1.0231 30 1 -0.3633 -0.9344 0.4278 31 1 -0.3634 0.8377 0.5952 32 1 1.6084 2.0283 -0.5139 33 1 3.1500 1.1384 -0.5138 34 1 3.0415 0.9509 1.9563 35 1 1.5000 1.8409 1.9562 36 1 4.0439 2.9059 0.9162 37 1 4.0465 2.6914 3.3367 38 1 2.5046 3.5807 3.3375 39 1 4.3238 4.9539 4.7750 40 1 6.5106 8.7494 5.8616 41 1 1.4337 -2.8401 2.0149 42 1 -0.0093 -1.9635 1.4513 43 1 -0.8139 -4.0178 0.3186 44 1 -0.5689 -4.3017 2.0583 45 1 0.3701 -6.1607 0.7125 46 1 1.6553 -5.2907 1.5834 47 1 2.8692 -3.3865 -1.3760 48 1 3.1147 -3.6711 0.3638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267427744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:56 Heat of formation + Delta-G solvation = -171.537904 kcal Electronic energy + Delta-G solvation = -30578.518241 eV Core-core repulsion = 25918.003490 eV Total energy + Delta-G solvation = -4660.514752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.41035 -47.39249 -40.77249 -38.50974 -37.75092 -36.50095 -35.12277 -33.88285 -32.08703 -31.66380 -30.83876 -29.63219 -27.26894 -26.35041 -24.55468 -23.45502 -23.37818 -22.16471 -20.82032 -19.65107 -19.32212 -18.35642 -18.05781 -17.54299 -17.01761 -16.49275 -16.41879 -16.27067 -15.72249 -15.61094 -15.42388 -14.92344 -14.59315 -14.38520 -14.07853 -13.97657 -13.79283 -13.72078 -13.62180 -13.33623 -13.30064 -13.11411 -13.05173 -12.79103 -12.70734 -12.50115 -12.42791 -12.21125 -11.94031 -11.81369 -11.65946 -11.50339 -11.24845 -11.23503 -11.08782 -10.96452 -10.59868 -10.03642 -9.97491 -9.57373 -9.06985 -8.58985 -8.21438 -8.15996 -6.30953 -3.82319 2.21625 2.50730 3.02310 3.06635 3.14737 3.26965 3.52256 3.68829 3.74032 3.81281 4.09599 4.12881 4.17338 4.24889 4.37059 4.41719 4.54240 4.64904 4.71992 4.81161 4.86405 4.90408 4.99486 5.10605 5.14253 5.18546 5.21703 5.22769 5.24878 5.34600 5.40697 5.42275 5.50175 5.59402 5.64165 5.72017 5.78563 5.83345 5.92390 6.14522 6.98032 7.03725 7.52744 7.58273 7.78872 8.14571 8.59830 8.95051 9.42454 9.82641 10.82152 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.001706 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.315718 B =16408.855659 C =16720.830537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.612 5.612 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.450 3.550 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.519 3.481 19 O -0.531 6.531 20 C -0.105 4.105 21 H 0.105 0.895 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.160 4.160 25 C 0.290 3.710 26 F -0.200 7.200 27 F -0.200 7.200 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.353 0.647 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -29.447 -6.654 35.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.345 5.345 3 C -0.006 4.006 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.236 3.764 8 O -0.446 6.446 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.306 3.694 19 O -0.407 6.407 20 C -0.126 4.126 21 H 0.123 0.877 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.198 4.198 25 C 0.254 3.746 26 F -0.181 7.181 27 F -0.180 7.180 28 C -0.179 4.179 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.357 -28.542 -7.332 34.200 hybrid contribution 0.334 -1.106 1.583 1.960 sum -17.023 -29.648 -5.750 34.668 Atomic orbital electron populations 1.22159 0.79272 1.04027 1.02576 1.47790 1.07196 1.06000 1.73552 1.21442 0.98238 0.83796 0.97140 1.22249 0.98979 0.90477 0.96713 1.60022 1.28554 1.27975 1.13428 1.21686 1.00206 0.95952 0.90442 1.19691 0.84807 0.87164 0.84770 1.90566 1.57946 1.66763 1.29295 1.42202 1.52197 1.22399 1.06208 1.19437 1.30675 0.96444 0.96807 0.86257 1.25043 0.97137 0.95979 0.98049 1.69619 1.38278 1.15888 1.28321 0.86665 0.78889 0.79604 0.84193 1.19654 1.20159 1.19502 1.20413 0.87814 0.85017 0.76121 1.90744 1.14066 1.87145 1.48761 1.21255 0.98338 0.92312 1.00709 0.87693 1.21828 1.00142 0.98382 0.95783 1.21510 0.97564 0.92876 1.03452 1.22559 1.00728 1.01326 0.95236 1.21059 0.80639 0.86804 0.86078 1.92996 1.65470 1.96604 1.63019 1.93024 1.69065 1.61482 1.94477 1.22315 0.98413 0.90785 1.06372 0.92131 0.89904 0.90501 0.89135 0.89729 0.95023 0.91150 0.82777 0.93702 0.89521 0.79700 0.91614 0.90383 0.89511 0.90477 0.89749 0.89214 0.88489 0.88842 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 9.97 59.85 0.60 0.90 16 2 N -0.61 -5.17 2.87 -181.57 -0.52 -5.69 16 3 C 0.12 1.22 5.66 -4.04 -0.02 1.20 16 4 C 0.05 0.56 6.01 -3.83 -0.02 0.53 16 5 N -0.67 -10.43 6.13 -115.06 -0.70 -11.13 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.45 10.34 7.82 -10.98 -0.09 10.26 16 8 O -0.56 -15.30 15.78 5.55 0.09 -15.22 16 9 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 10 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 11 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 14 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 18 C 0.52 5.05 6.91 -10.98 -0.08 4.97 16 19 O -0.53 -7.35 15.62 5.55 0.09 -7.27 16 20 C -0.10 -0.67 1.58 -91.78 -0.14 -0.82 16 21 H 0.11 0.56 7.34 -51.93 -0.38 0.18 16 22 C -0.12 -0.54 4.87 -26.73 -0.13 -0.67 16 23 C -0.12 -0.38 5.80 -26.73 -0.16 -0.53 16 24 C -0.16 -0.72 5.45 -26.74 -0.15 -0.87 16 25 C 0.29 2.05 2.10 -26.76 -0.06 2.00 16 26 F -0.20 -1.63 16.02 2.25 0.04 -1.59 16 27 F -0.20 -1.82 17.06 2.25 0.04 -1.78 16 28 C -0.14 -1.05 4.12 -26.76 -0.11 -1.16 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.25 3.99 -51.93 -0.21 0.04 16 31 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 32 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.27 5.43 -51.93 -0.28 -0.01 16 43 H 0.08 0.24 7.80 -51.93 -0.41 -0.16 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.11 0.84 7.95 -51.93 -0.41 0.42 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -35.49 390.62 -6.99 -42.47 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.27 Total: 10.15 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.63 Total: 8.80 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.51 Total: -56.17 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.48 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.49 -6.99 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267427744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.063 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds