Wall clock time and date at job start Wed Apr 1 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 119.99958 * 2 1 4 4 C 1.52994 * 109.47551 * 89.99231 * 3 2 1 5 5 N 1.46901 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99838 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46616 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00754 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99812 * 179.97438 * 7 6 5 10 10 C 1.37090 * 119.99978 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00147 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00211 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99656 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.46776 * 89.99682 * 14 12 10 16 16 H 1.48491 * 109.47196 * 209.99670 * 14 12 10 17 17 H 1.48498 * 109.47352 * 330.00149 * 14 12 10 18 18 C 1.34777 * 120.00029 * 179.97438 * 2 1 3 19 19 O 1.21284 * 119.99593 * 184.74308 * 18 2 1 20 20 C 1.50701 * 119.99987 * 4.74556 * 18 2 1 21 21 H 1.08998 * 109.46679 * 46.11575 * 20 18 2 22 22 C 1.52994 * 109.47034 * 286.11759 * 20 18 2 23 23 C 1.53005 * 109.47011 * 180.02562 * 22 20 18 24 24 C 1.52995 * 109.46895 * 59.99947 * 23 22 20 25 25 C 1.52994 * 109.47334 * 299.99855 * 24 23 22 26 26 F 1.39901 * 109.47543 * 300.00441 * 25 24 23 27 27 F 1.39898 * 109.47412 * 180.02562 * 25 24 23 28 28 C 1.52995 * 109.46793 * 166.11754 * 20 18 2 29 29 H 1.08996 * 109.46624 * 84.60437 * 1 2 3 30 30 H 1.08999 * 109.46853 * 204.60051 * 1 2 3 31 31 H 1.08996 * 109.47351 * 324.60477 * 1 2 3 32 32 H 1.09001 * 109.46656 * 329.99505 * 3 2 1 33 33 H 1.09002 * 109.47042 * 209.99880 * 3 2 1 34 34 H 1.09005 * 109.46673 * 59.99989 * 4 3 2 35 35 H 1.09002 * 109.47477 * 300.00382 * 4 3 2 36 36 H 1.00903 * 110.99797 * 303.95394 * 5 4 3 37 37 H 1.08994 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09003 * 109.46802 * 299.99537 * 6 5 4 39 39 H 0.97003 * 119.99930 * 0.02562 * 9 7 6 40 40 H 0.97005 * 120.00173 * 180.02562 * 13 12 10 41 41 H 1.09007 * 109.47359 * 300.00096 * 22 20 18 42 42 H 1.09003 * 109.47334 * 60.00416 * 22 20 18 43 43 H 1.09001 * 109.47111 * 299.99739 * 23 22 20 44 44 H 1.09000 * 109.46890 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.46869 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47654 * 60.00453 * 24 23 22 47 47 H 1.09000 * 109.47405 * 299.99715 * 28 20 18 48 48 H 1.09001 * 109.47411 * 59.99941 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7106 1.4424 5 7 3.1864 2.9831 1.4423 6 6 3.4500 3.4389 2.8138 7 6 4.2021 4.7441 2.7734 8 8 4.4906 5.2452 1.7072 9 7 4.5542 5.3548 3.9223 10 6 5.2388 6.5419 3.8856 11 1 5.4957 6.9881 2.9362 12 6 5.6014 7.1718 5.0699 13 7 6.2572 8.3099 5.0348 14 14 5.1564 6.4005 6.7121 15 1 6.2517 5.4970 7.1475 16 1 4.9641 7.4691 7.7250 17 1 3.9000 5.6219 6.5691 18 6 2.1390 -1.1672 0.0005 19 8 3.3487 -1.1689 0.0874 20 6 1.3893 -2.4701 -0.1069 21 1 0.6458 -2.3971 -0.9005 22 6 0.6902 -2.7672 1.2212 23 6 -0.0704 -4.0903 1.1123 24 6 0.9119 -5.2181 0.7896 25 6 1.6110 -4.9210 -0.5384 26 9 0.6568 -4.8279 -1.5573 27 9 2.5088 -5.9525 -0.8338 28 6 2.3711 -3.5981 -0.4299 29 1 -0.3632 0.0966 -1.0231 30 1 -0.3633 -0.9344 0.4278 31 1 -0.3634 0.8377 0.5952 32 1 1.6084 2.0283 -0.5139 33 1 3.1500 1.1384 -0.5138 34 1 3.0415 0.9509 1.9563 35 1 1.5000 1.8409 1.9562 36 1 4.0439 2.9059 0.9162 37 1 4.0465 2.6914 3.3367 38 1 2.5046 3.5807 3.3375 39 1 4.3238 4.9539 4.7750 40 1 6.5106 8.7494 5.8616 41 1 1.4337 -2.8401 2.0149 42 1 -0.0093 -1.9635 1.4513 43 1 -0.8139 -4.0178 0.3186 44 1 -0.5689 -4.3017 2.0583 45 1 0.3701 -6.1607 0.7125 46 1 1.6553 -5.2907 1.5834 47 1 2.8692 -3.3865 -1.3760 48 1 3.1147 -3.6711 0.3638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267427744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:52 Heat of formation + Delta-G solvation = -198.337929 kcal Electronic energy + Delta-G solvation = -30579.680377 eV Core-core repulsion = 25918.003490 eV Total energy + Delta-G solvation = -4661.676888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -50.01676 -48.01698 -41.46039 -40.32409 -38.31883 -37.44798 -36.29782 -35.76086 -33.76863 -32.60540 -31.45363 -30.49735 -28.17507 -27.45733 -25.83102 -24.52999 -23.81551 -23.06863 -21.39211 -21.24040 -20.41699 -20.07670 -18.70280 -18.16604 -17.88829 -17.56756 -17.22302 -17.06443 -17.00581 -16.63663 -16.37354 -16.03900 -15.67888 -15.38957 -15.13571 -14.99774 -14.82749 -14.52018 -14.47455 -14.34931 -14.18741 -14.04349 -13.87015 -13.78254 -13.65580 -13.42484 -13.26401 -13.10870 -12.98700 -12.83371 -12.72169 -12.42553 -12.27565 -12.08178 -11.98102 -11.89245 -11.59699 -11.52978 -11.44507 -10.73960 -10.49534 -10.26699 -9.74579 -9.44234 -8.42289 -6.03567 1.29611 1.35151 1.44316 1.49931 1.82015 1.92852 2.22437 2.69495 2.79717 3.03916 3.13700 3.21187 3.31186 3.44039 3.62292 3.79250 3.91170 4.01244 4.03764 4.10416 4.13709 4.18108 4.24656 4.31935 4.40524 4.46201 4.48069 4.54800 4.68075 4.73699 4.79723 4.83960 4.85174 4.89280 4.92294 4.96253 5.10902 5.19704 5.35229 5.42422 5.51825 5.85662 5.98266 6.24258 6.32740 6.57838 6.86191 7.07310 7.37475 7.93791 8.75273 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.001706 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.315718 B =16408.855659 C =16720.830537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.608 5.608 3 C 0.120 3.880 4 C 0.057 3.943 5 N -0.681 5.681 6 C 0.064 3.936 7 C 0.447 3.553 8 O -0.614 6.614 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.055 0.945 12 C -0.016 4.016 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.230 1.230 18 C 0.513 3.487 19 O -0.582 6.582 20 C -0.096 4.096 21 H 0.121 0.879 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.158 4.158 25 C 0.286 3.714 26 F -0.206 7.206 27 F -0.215 7.215 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.093 0.907 36 H 0.342 0.658 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.390 0.610 40 H 0.280 0.720 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.289 -32.065 -4.078 38.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.340 5.340 3 C -0.003 4.003 4 C -0.073 4.073 5 N -0.313 5.313 6 C -0.068 4.068 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.231 5.231 10 C -0.460 4.460 11 H 0.073 0.927 12 C -0.215 4.215 13 N -0.574 5.574 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.153 1.153 18 C 0.302 3.698 19 O -0.462 6.462 20 C -0.117 4.117 21 H 0.138 0.862 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.196 4.196 25 C 0.250 3.750 26 F -0.187 7.187 27 F -0.196 7.196 28 C -0.179 4.179 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.226 0.774 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.966 -31.186 -4.766 37.879 hybrid contribution 1.478 -0.240 0.600 1.613 sum -19.487 -31.426 -4.166 37.212 Atomic orbital electron populations 1.22457 0.76577 1.05731 1.03849 1.47872 1.08741 1.04800 1.72556 1.21273 0.97730 0.85085 0.96262 1.22247 0.99074 0.88375 0.97606 1.60056 1.28302 1.30239 1.12743 1.21619 1.01002 0.92446 0.91779 1.20949 0.83422 0.88547 0.83550 1.90545 1.59523 1.68559 1.31230 1.42017 1.52205 1.21248 1.07646 1.19013 1.33131 0.98780 0.95036 0.92701 1.26148 0.96089 0.96162 1.03073 1.69803 1.39443 1.17925 1.30211 0.85350 0.80512 0.79030 0.76540 1.18288 1.19874 1.15271 1.21023 0.87399 0.86259 0.75082 1.90723 1.16384 1.87899 1.51203 1.21256 0.97877 0.89825 1.02726 0.86153 1.21860 1.00216 0.99787 0.93891 1.21527 0.97033 0.91374 1.04816 1.22618 1.01103 1.02462 0.93431 1.21338 0.80458 0.86004 0.87188 1.92978 1.65537 1.96593 1.63588 1.92991 1.69805 1.62127 1.94706 1.22269 0.98717 0.91847 1.05073 0.91012 0.87699 0.89451 0.88159 0.92299 0.95846 0.88884 0.83966 0.91069 0.86256 0.77422 0.91097 0.91044 0.87598 0.89827 0.87557 0.88275 0.87882 0.90796 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 9.97 127.77 1.27 1.61 16 2 N -0.61 -9.15 2.87 -846.75 -2.43 -11.59 16 3 C 0.12 2.40 5.66 86.38 0.49 2.89 16 4 C 0.06 1.24 6.01 86.30 0.52 1.76 16 5 N -0.68 -20.43 6.13 -517.93 -3.17 -23.60 16 6 C 0.06 1.98 6.17 85.56 0.53 2.51 16 7 C 0.45 20.50 7.82 87.65 0.69 21.19 16 8 O -0.61 -34.62 15.78 -3.06 -0.05 -34.67 16 9 N -0.59 -28.06 5.09 -306.98 -1.56 -29.62 16 10 C -0.33 -19.55 10.16 84.04 0.85 -18.70 16 11 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 12 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 13 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 14 Si 0.97 38.74 27.74 68.60 1.90 40.65 16 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 18 C 0.51 9.58 6.91 87.66 0.61 10.18 16 19 O -0.58 -16.59 15.62 -3.04 -0.05 -16.64 16 20 C -0.10 -1.07 1.58 -11.54 -0.02 -1.09 16 21 H 0.12 0.99 7.34 -2.39 -0.02 0.97 16 22 C -0.12 -0.66 4.87 30.59 0.15 -0.51 16 23 C -0.11 -0.32 5.80 30.59 0.18 -0.14 16 24 C -0.16 -1.06 5.45 30.59 0.17 -0.89 16 25 C 0.29 3.80 2.10 30.58 0.06 3.86 16 26 F -0.21 -3.09 16.02 44.97 0.72 -2.37 16 27 F -0.22 -3.93 17.06 44.97 0.77 -3.16 16 28 C -0.14 -2.09 4.12 30.58 0.13 -1.97 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.16 3.99 -2.39 -0.01 0.16 16 31 H 0.09 0.41 8.11 -2.39 -0.02 0.39 16 32 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 33 H 0.06 1.49 7.49 -2.39 -0.02 1.47 16 34 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.34 11.49 8.43 -89.69 -0.76 10.74 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 40 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 41 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.11 0.19 5.43 -2.39 -0.01 0.18 16 43 H 0.08 0.19 7.80 -2.39 -0.02 0.17 16 44 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.10 1.60 7.95 -2.39 -0.02 1.58 16 Total: -1.00 -84.70 390.62 2.17 -82.53 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.35 Total: 34.48 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.09 Total: 20.26 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.87 Total: -121.07 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.10 Total: -51.31 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.49 Total: -5.53 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.65 kcal Total: -84.70 2.17 -82.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267427744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.808 kcal (2) G-P(sol) polarization free energy of solvation -84.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds