Wall clock time and date at job start Wed Apr 1 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28439 * 125.18533 * 2 1 4 4 C 1.30867 * 110.92369 * 180.02562 * 3 2 1 5 5 C 1.39667 * 107.86348 * 359.77748 * 4 3 2 6 6 C 1.36601 * 125.19092 * 180.02562 * 2 1 3 7 7 C 1.47157 * 126.88298 * 359.94678 * 6 2 1 8 8 O 1.21627 * 120.00278 * 24.54614 * 7 6 2 9 9 N 1.34781 * 119.99620 * 204.53955 * 7 6 2 10 10 C 1.47148 * 120.68391 * 359.03532 * 9 7 6 11 11 C 1.53891 * 108.04737 * 132.61242 * 10 9 7 12 12 H 1.08996 * 112.12450 * 182.01480 * 11 10 9 13 13 C 1.54553 * 107.80716 * 306.64744 * 11 10 9 14 14 C 1.54253 * 104.94433 * 88.96677 * 13 11 10 15 15 C 1.54550 * 104.93559 * 359.97438 * 14 13 11 16 16 H 1.09000 * 112.71096 * 146.75444 * 15 14 13 17 17 C 1.47151 * 120.68335 * 179.00530 * 9 7 6 18 18 N 1.48728 * 107.17706 * 58.43142 * 11 10 9 19 19 C 1.46904 * 111.00164 * 167.47820 * 18 11 10 20 20 C 1.50702 * 109.47011 * 284.79527 * 19 18 11 21 21 O 1.21288 * 119.99928 * 0.02562 * 20 19 18 22 22 N 1.34772 * 119.99598 * 179.97438 * 20 19 18 23 23 C 1.37100 * 119.99855 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99905 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99869 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47104 * 270.00257 * 27 25 23 29 29 H 1.48501 * 109.46872 * 29.99752 * 27 25 23 30 30 H 1.48498 * 109.47373 * 149.99889 * 27 25 23 31 31 H 1.08997 * 109.47449 * 264.40346 * 1 2 3 32 32 H 1.09001 * 109.47494 * 24.41019 * 1 2 3 33 33 H 1.09000 * 109.46802 * 144.40591 * 1 2 3 34 34 H 1.08007 * 126.06739 * 180.02562 * 4 3 2 35 35 H 1.08001 * 127.32420 * 180.27144 * 5 4 3 36 36 H 1.09004 * 109.74375 * 252.24717 * 10 9 7 37 37 H 1.09002 * 109.74693 * 12.92052 * 10 9 7 38 38 H 1.09003 * 110.34476 * 207.83954 * 13 11 10 39 39 H 1.09001 * 110.34241 * 329.99083 * 13 11 10 40 40 H 1.08999 * 110.34627 * 241.13506 * 14 13 11 41 41 H 1.08997 * 110.34541 * 118.86300 * 14 13 11 42 42 H 1.08998 * 109.74888 * 107.74794 * 17 9 7 43 43 H 1.09000 * 109.78633 * 347.04977 * 17 9 7 44 44 H 1.09002 * 109.46857 * 164.79714 * 19 18 11 45 45 H 1.08999 * 109.46911 * 44.79540 * 19 18 11 46 46 H 0.97003 * 120.00175 * 0.02562 * 22 20 19 47 47 H 0.97003 * 120.00120 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4734 0.7273 -0.0005 5 6 3.5612 -0.6666 0.0042 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5165 0.0000 8 8 0.7002 -2.8003 -0.4367 9 7 2.6026 -3.4844 0.4842 10 6 3.9435 -3.1608 0.9966 11 6 4.1167 -3.8623 2.3553 12 1 5.0799 -3.6376 2.8135 13 6 2.9222 -3.4610 3.2502 14 6 1.8330 -4.5127 2.9549 15 6 2.4647 -5.4569 1.9070 16 1 2.1275 -6.4880 2.0122 17 6 2.1564 -4.8863 0.5121 18 7 3.9298 -5.3196 2.1242 19 6 4.3648 -6.0979 3.2918 20 6 5.8706 -6.1362 3.3373 21 8 6.5178 -5.5705 2.4817 22 7 6.4980 -6.7983 4.3295 23 6 7.8680 -6.8337 4.3706 24 1 8.4443 -6.3307 3.6083 25 6 8.5149 -7.5167 5.3932 26 7 9.8280 -7.5502 5.4330 27 14 7.5181 -8.3874 6.7115 28 1 7.2602 -7.4520 7.8357 29 1 6.2254 -8.8391 6.1369 30 1 8.2762 -9.5631 7.2097 31 1 -0.3634 -0.1002 1.0227 32 1 -0.3634 0.9358 -0.4247 33 1 -0.3633 -0.8357 -0.5982 34 1 4.3048 1.4168 -0.0003 35 1 4.4594 -1.2661 0.0092 36 1 4.7005 -3.5181 0.2985 37 1 4.0390 -2.0824 1.1232 38 1 3.2078 -3.4959 4.3016 39 1 2.5698 -2.4637 2.9869 40 1 0.9442 -4.0329 2.5453 41 1 1.5834 -5.0644 3.8612 42 1 2.6912 -5.4581 -0.2463 43 1 1.0842 -4.9362 0.3226 44 1 3.9775 -7.1140 3.2159 45 1 3.9855 -5.6315 4.2011 46 1 5.9804 -7.2504 5.0140 47 1 10.2796 -8.0267 6.1470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267527968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:34 Heat of formation + Delta-G solvation = 63.011280 kcal Electronic energy + Delta-G solvation = -31643.683685 eV Core-core repulsion = 27444.028936 eV Total energy + Delta-G solvation = -4199.654749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83627 -41.09170 -38.97523 -37.94446 -35.11059 -33.98204 -33.46347 -32.25433 -31.73807 -31.22152 -30.65146 -28.21582 -27.35473 -26.02710 -24.99040 -23.97363 -22.76621 -21.95755 -20.73420 -20.19967 -19.43535 -19.07328 -18.33888 -17.43846 -16.87582 -16.64585 -16.16853 -15.98015 -15.56260 -15.15288 -15.02358 -14.83325 -14.35119 -14.16987 -14.11924 -13.93094 -13.63868 -13.45858 -13.19899 -13.08791 -12.78759 -12.62994 -12.54045 -12.49451 -12.19359 -11.98781 -11.58316 -11.32267 -11.20592 -11.08986 -10.93190 -10.74984 -10.62387 -10.53750 -10.22268 -10.00023 -9.57878 -9.45411 -9.18041 -9.01838 -8.58624 -8.23566 -8.19144 -6.33225 -3.84636 1.05468 2.06783 2.38269 2.84615 2.90749 3.00039 3.04035 3.12981 3.69732 3.77452 4.07868 4.08877 4.28982 4.46033 4.61005 4.68133 4.79997 4.83473 4.86676 4.94905 4.99817 5.10936 5.16031 5.18473 5.21475 5.33738 5.34927 5.42719 5.47707 5.49617 5.60657 5.69999 5.71606 5.72216 5.79227 5.84200 5.89516 6.00386 6.10474 6.21764 6.32300 6.45059 6.85443 6.94176 7.17253 7.55920 7.74902 7.87673 8.12063 8.57906 8.93186 9.40413 9.81072 10.79896 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.002621 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.964717 B =10680.107304 C =11331.662257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.261 5.261 3 N -0.281 5.281 4 C -0.001 4.001 5 C -0.199 4.199 6 C -0.033 4.033 7 C 0.591 3.409 8 O -0.550 6.550 9 N -0.583 5.583 10 C 0.090 3.910 11 C 0.059 3.941 12 H 0.118 0.882 13 C -0.148 4.148 14 C -0.145 4.145 15 C 0.046 3.954 16 H 0.107 0.893 17 C 0.130 3.870 18 N -0.476 5.476 19 C 0.032 3.968 20 C 0.454 3.546 21 O -0.559 6.559 22 N -0.592 5.592 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.879 3.121 28 H -0.272 1.272 29 H -0.270 1.270 30 H -0.277 1.277 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.585 10.740 -6.277 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.048 5.048 3 N -0.114 5.114 4 C -0.177 4.177 5 C -0.228 4.228 6 C -0.161 4.161 7 C 0.378 3.622 8 O -0.429 6.429 9 N -0.314 5.314 10 C -0.032 4.032 11 C -0.051 4.051 12 H 0.136 0.864 13 C -0.187 4.187 14 C -0.184 4.184 15 C -0.064 4.064 16 H 0.125 0.875 17 C 0.008 3.992 18 N -0.198 5.198 19 C -0.100 4.100 20 C 0.239 3.761 21 O -0.440 6.440 22 N -0.232 5.232 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.705 3.295 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.202 1.202 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.206 0.794 35 H 0.194 0.806 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.072 0.928 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.077 11.583 -7.451 24.347 hybrid contribution -0.432 -1.257 2.064 2.455 sum -20.509 10.326 -5.387 23.585 Atomic orbital electron populations 1.22332 0.72747 1.05996 1.04652 1.45584 1.07773 1.01698 1.49768 1.73219 1.04514 1.13552 1.20077 1.23656 0.93435 0.95101 1.05490 1.22723 0.96130 0.95628 1.08279 1.21368 0.91639 0.89602 1.13533 1.16892 0.84074 0.83068 0.78181 1.90759 1.21044 1.83026 1.48081 1.47810 1.16538 1.07206 1.59863 1.22945 0.82786 1.01873 0.95569 1.23436 0.99157 0.88090 0.94387 0.86401 1.22874 0.95994 0.99312 1.00552 1.22839 0.98893 0.97341 0.99344 1.23530 0.88788 0.99480 0.94619 0.87481 1.21854 1.00975 0.79659 0.96744 1.65081 1.12411 1.05921 1.36388 1.22023 0.96046 0.99157 0.92766 1.19591 0.88191 0.84260 0.84014 1.90553 1.66810 1.47535 1.39101 1.42222 1.07623 1.48543 1.24813 1.19412 0.79469 1.32220 1.12119 0.86253 1.25032 0.95574 0.97720 0.97835 1.69618 1.06910 1.42316 1.33305 0.86689 0.80031 0.80295 0.82461 1.19708 1.19523 1.20196 0.90018 0.88597 0.87222 0.79448 0.80618 0.89293 0.86962 0.91451 0.91492 0.91309 0.91550 0.90061 0.88789 0.89239 0.92826 0.79802 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.96 59.85 0.66 1.33 16 2 N -0.26 -2.91 3.75 -63.88 -0.24 -3.15 16 3 N -0.28 -3.23 11.90 30.59 0.36 -2.87 16 4 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 5 C -0.20 -2.02 8.70 -38.99 -0.34 -2.36 16 6 C -0.03 -0.38 6.61 -82.06 -0.54 -0.92 16 7 C 0.59 7.32 7.59 -12.64 -0.10 7.22 16 8 O -0.55 -7.77 14.53 5.25 0.08 -7.70 16 9 N -0.58 -6.70 2.25 -172.95 -0.39 -7.09 16 10 C 0.09 1.04 4.73 -3.22 -0.02 1.02 16 11 C 0.06 0.77 3.22 -65.42 -0.21 0.56 16 12 H 0.12 1.85 7.01 -51.93 -0.36 1.48 16 13 C -0.15 -1.67 5.47 -25.26 -0.14 -1.81 16 14 C -0.14 -1.50 5.69 -25.26 -0.14 -1.64 16 15 C 0.05 0.50 3.67 -65.44 -0.24 0.26 16 16 H 0.11 1.01 7.98 -51.93 -0.41 0.60 16 17 C 0.13 1.43 5.89 -3.25 -0.02 1.41 16 18 N -0.48 -6.70 4.56 -214.21 -0.98 -7.68 16 19 C 0.03 0.49 5.15 -4.97 -0.03 0.46 16 20 C 0.45 9.65 7.44 -10.99 -0.08 9.57 16 21 O -0.56 -13.94 14.93 5.55 0.08 -13.86 16 22 N -0.59 -13.50 5.09 -10.96 -0.06 -13.55 16 23 C -0.30 -8.31 10.16 -14.93 -0.15 -8.46 16 24 H 0.12 3.74 7.39 -52.49 -0.39 3.36 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 26 N -0.88 -25.30 13.96 55.50 0.77 -24.52 16 27 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 28 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 29 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 30 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.96 6.42 -51.93 -0.33 0.63 16 34 H 0.19 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.18 1.50 5.74 -52.49 -0.30 1.20 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.13 3.63 -51.93 -0.19 0.94 16 38 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 39 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 40 H 0.07 0.72 7.84 -51.93 -0.41 0.32 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.00 7.11 -51.93 -0.37 0.63 16 44 H 0.09 1.21 7.97 -51.93 -0.41 0.79 16 45 H 0.05 0.73 6.98 -51.93 -0.36 0.37 16 46 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 47 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -33.93 368.90 -7.47 -41.40 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.30 Total: 11.81 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.65 Total: 7.43 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.52 Total: -58.86 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.16 Total: -21.56 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.93 -7.47 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267527968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.415 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds