Wall clock time and date at job start Wed Apr 1 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28439 * 125.18533 * 2 1 4 4 C 1.30867 * 110.92369 * 180.02562 * 3 2 1 5 5 C 1.39667 * 107.86348 * 359.77748 * 4 3 2 6 6 C 1.36601 * 125.19092 * 180.02562 * 2 1 3 7 7 C 1.47157 * 126.88298 * 359.94678 * 6 2 1 8 8 O 1.21627 * 120.00278 * 24.54614 * 7 6 2 9 9 N 1.34781 * 119.99620 * 204.53955 * 7 6 2 10 10 C 1.47148 * 120.68391 * 359.03532 * 9 7 6 11 11 C 1.53891 * 108.04737 * 132.61242 * 10 9 7 12 12 H 1.08996 * 112.12450 * 182.01480 * 11 10 9 13 13 C 1.54553 * 107.80716 * 306.64744 * 11 10 9 14 14 C 1.54253 * 104.94433 * 88.96677 * 13 11 10 15 15 C 1.54550 * 104.93559 * 359.97438 * 14 13 11 16 16 H 1.09000 * 112.71096 * 146.75444 * 15 14 13 17 17 C 1.47151 * 120.68335 * 179.00530 * 9 7 6 18 18 N 1.48728 * 107.17706 * 58.43142 * 11 10 9 19 19 C 1.46904 * 111.00164 * 167.47820 * 18 11 10 20 20 C 1.50702 * 109.47011 * 284.79527 * 19 18 11 21 21 O 1.21288 * 119.99928 * 0.02562 * 20 19 18 22 22 N 1.34772 * 119.99598 * 179.97438 * 20 19 18 23 23 C 1.37100 * 119.99855 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99905 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99869 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47104 * 270.00257 * 27 25 23 29 29 H 1.48501 * 109.46872 * 29.99752 * 27 25 23 30 30 H 1.48498 * 109.47373 * 149.99889 * 27 25 23 31 31 H 1.08997 * 109.47449 * 264.40346 * 1 2 3 32 32 H 1.09001 * 109.47494 * 24.41019 * 1 2 3 33 33 H 1.09000 * 109.46802 * 144.40591 * 1 2 3 34 34 H 1.08007 * 126.06739 * 180.02562 * 4 3 2 35 35 H 1.08001 * 127.32420 * 180.27144 * 5 4 3 36 36 H 1.09004 * 109.74375 * 252.24717 * 10 9 7 37 37 H 1.09002 * 109.74693 * 12.92052 * 10 9 7 38 38 H 1.09003 * 110.34476 * 207.83954 * 13 11 10 39 39 H 1.09001 * 110.34241 * 329.99083 * 13 11 10 40 40 H 1.08999 * 110.34627 * 241.13506 * 14 13 11 41 41 H 1.08997 * 110.34541 * 118.86300 * 14 13 11 42 42 H 1.08998 * 109.74888 * 107.74794 * 17 9 7 43 43 H 1.09000 * 109.78633 * 347.04977 * 17 9 7 44 44 H 1.09002 * 109.46857 * 164.79714 * 19 18 11 45 45 H 1.08999 * 109.46911 * 44.79540 * 19 18 11 46 46 H 0.97003 * 120.00175 * 0.02562 * 22 20 19 47 47 H 0.97003 * 120.00120 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4734 0.7273 -0.0005 5 6 3.5612 -0.6666 0.0042 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5165 0.0000 8 8 0.7002 -2.8003 -0.4367 9 7 2.6026 -3.4844 0.4842 10 6 3.9435 -3.1608 0.9966 11 6 4.1167 -3.8623 2.3553 12 1 5.0799 -3.6376 2.8135 13 6 2.9222 -3.4610 3.2502 14 6 1.8330 -4.5127 2.9549 15 6 2.4647 -5.4569 1.9070 16 1 2.1275 -6.4880 2.0122 17 6 2.1564 -4.8863 0.5121 18 7 3.9298 -5.3196 2.1242 19 6 4.3648 -6.0979 3.2918 20 6 5.8706 -6.1362 3.3373 21 8 6.5178 -5.5705 2.4817 22 7 6.4980 -6.7983 4.3295 23 6 7.8680 -6.8337 4.3706 24 1 8.4443 -6.3307 3.6083 25 6 8.5149 -7.5167 5.3932 26 7 9.8280 -7.5502 5.4330 27 14 7.5181 -8.3874 6.7115 28 1 7.2602 -7.4520 7.8357 29 1 6.2254 -8.8391 6.1369 30 1 8.2762 -9.5631 7.2097 31 1 -0.3634 -0.1002 1.0227 32 1 -0.3634 0.9358 -0.4247 33 1 -0.3633 -0.8357 -0.5982 34 1 4.3048 1.4168 -0.0003 35 1 4.4594 -1.2661 0.0092 36 1 4.7005 -3.5181 0.2985 37 1 4.0390 -2.0824 1.1232 38 1 3.2078 -3.4959 4.3016 39 1 2.5698 -2.4637 2.9869 40 1 0.9442 -4.0329 2.5453 41 1 1.5834 -5.0644 3.8612 42 1 2.6912 -5.4581 -0.2463 43 1 1.0842 -4.9362 0.3226 44 1 3.9775 -7.1140 3.2159 45 1 3.9855 -5.6315 4.2011 46 1 5.9804 -7.2504 5.0140 47 1 10.2796 -8.0267 6.1470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267527968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:32 Heat of formation + Delta-G solvation = 37.425217 kcal Electronic energy + Delta-G solvation = -31644.793180 eV Core-core repulsion = 27444.028936 eV Total energy + Delta-G solvation = -4200.764244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.64932 -42.07077 -40.24899 -39.40455 -36.18611 -35.81487 -34.24526 -33.70114 -33.16310 -32.34231 -31.52706 -29.29751 -28.14636 -27.39457 -25.90696 -25.50648 -23.74455 -22.76977 -21.72215 -21.18208 -21.03901 -20.29836 -19.85545 -18.41741 -17.85915 -17.64900 -17.46420 -16.85464 -16.77483 -16.55720 -16.20590 -16.06653 -15.41727 -15.25453 -15.13148 -15.02515 -14.82336 -14.73461 -14.34553 -14.21291 -13.94421 -13.76713 -13.58017 -13.53699 -13.27711 -13.25789 -12.88171 -12.55214 -12.38069 -12.22832 -12.05634 -11.95293 -11.90810 -11.61934 -11.44164 -11.40814 -11.18191 -10.41472 -10.27930 -10.19133 -9.98660 -9.85440 -9.36278 -8.37289 -5.97139 0.18524 1.27812 1.32007 1.37214 1.45964 1.59141 1.98431 2.00815 2.03060 2.25600 2.61172 3.17959 3.19374 3.20830 3.58247 3.64678 3.73105 3.87358 3.93709 4.10531 4.17890 4.23138 4.25534 4.27984 4.34355 4.38296 4.48763 4.53921 4.56719 4.61073 4.61521 4.70377 4.72172 4.77257 4.85289 4.88573 4.94595 5.09861 5.21925 5.36160 5.47898 5.56712 5.69313 5.83767 5.89826 6.02992 6.21707 6.64539 6.85539 6.94075 7.02515 7.46048 8.03523 8.80367 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.002621 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.964717 B =10680.107304 C =11331.662257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.266 5.266 3 N -0.298 5.298 4 C -0.003 4.003 5 C -0.199 4.199 6 C -0.051 4.051 7 C 0.593 3.407 8 O -0.569 6.569 9 N -0.579 5.579 10 C 0.098 3.902 11 C 0.056 3.944 12 H 0.086 0.914 13 C -0.141 4.141 14 C -0.137 4.137 15 C 0.052 3.948 16 H 0.132 0.868 17 C 0.128 3.872 18 N -0.499 5.499 19 C 0.045 3.955 20 C 0.455 3.545 21 O -0.602 6.602 22 N -0.596 5.596 23 C -0.321 4.321 24 H 0.057 0.943 25 C -0.017 4.017 26 N -0.937 5.937 27 Si 0.962 3.038 28 H -0.259 1.259 29 H -0.230 1.230 30 H -0.279 1.279 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.216 0.784 35 H 0.187 0.813 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.080 0.920 46 H 0.388 0.612 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.863 10.154 -4.827 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.054 5.054 3 N -0.130 5.130 4 C -0.178 4.178 5 C -0.228 4.228 6 C -0.180 4.180 7 C 0.380 3.620 8 O -0.450 6.450 9 N -0.310 5.310 10 C -0.024 4.024 11 C -0.054 4.054 12 H 0.105 0.895 13 C -0.180 4.180 14 C -0.176 4.176 15 C -0.057 4.057 16 H 0.150 0.850 17 C 0.006 3.994 18 N -0.221 5.221 19 C -0.086 4.086 20 C 0.243 3.757 21 O -0.485 6.485 22 N -0.238 5.238 23 C -0.451 4.451 24 H 0.075 0.925 25 C -0.215 4.215 26 N -0.578 5.578 27 Si 0.782 3.218 28 H -0.183 1.183 29 H -0.154 1.154 30 H -0.204 1.204 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.232 0.768 35 H 0.204 0.796 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.098 0.902 46 H 0.223 0.777 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.395 11.004 -6.015 26.544 hybrid contribution 0.658 -0.956 1.448 1.855 sum -22.737 10.048 -4.567 25.274 Atomic orbital electron populations 1.22495 0.71515 1.06608 1.05453 1.45859 1.08638 1.01407 1.49520 1.73214 1.05233 1.13920 1.20678 1.24173 0.93737 0.95456 1.04425 1.22920 0.96074 0.96066 1.07716 1.21429 0.92388 0.89498 1.14699 1.16977 0.83784 0.83431 0.77776 1.90745 1.21849 1.83394 1.49031 1.47801 1.16237 1.07453 1.59472 1.22845 0.82530 1.02484 0.94545 1.23326 0.98522 0.88178 0.95360 0.89550 1.22795 0.95378 0.99783 1.00048 1.22787 0.98191 0.96829 0.99770 1.23623 0.86554 1.01039 0.94453 0.85047 1.21926 1.01275 0.79222 0.96977 1.65035 1.14857 1.06135 1.36103 1.21916 0.90704 1.01471 0.94506 1.20835 0.90946 0.81708 0.82212 1.90539 1.68768 1.48675 1.40566 1.42059 1.05857 1.49732 1.26149 1.18979 0.81645 1.32952 1.11500 0.92507 1.26074 0.96802 0.98145 1.00484 1.69806 1.09509 1.43713 1.34777 0.85404 0.79487 0.78519 0.78358 1.18333 1.15355 1.20385 0.88804 0.86867 0.88026 0.76765 0.79611 0.90731 0.85652 0.91307 0.91459 0.91225 0.89821 0.90576 0.88081 0.86207 0.90239 0.77695 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.96 127.77 1.40 2.59 16 2 N -0.27 -5.68 3.75 -356.03 -1.33 -7.01 16 3 N -0.30 -6.48 11.90 -57.14 -0.68 -7.16 16 4 C 0.00 -0.05 12.03 85.18 1.02 0.98 16 5 C -0.20 -3.86 8.70 22.66 0.20 -3.67 16 6 C -0.05 -1.15 6.61 40.78 0.27 -0.88 16 7 C 0.59 14.12 7.59 86.58 0.66 14.78 16 8 O -0.57 -15.57 14.53 -4.12 -0.06 -15.63 16 9 N -0.58 -12.68 2.25 -819.33 -1.84 -14.52 16 10 C 0.10 2.22 4.73 86.56 0.41 2.63 16 11 C 0.06 1.42 3.22 45.39 0.15 1.57 16 12 H 0.09 2.77 7.01 -2.39 -0.02 2.76 16 13 C -0.14 -2.86 5.47 31.55 0.17 -2.69 16 14 C -0.14 -2.34 5.69 31.55 0.18 -2.16 16 15 C 0.05 0.97 3.67 45.36 0.17 1.14 16 16 H 0.13 1.87 7.98 -2.39 -0.02 1.85 16 17 C 0.13 2.58 5.89 86.54 0.51 3.09 16 18 N -0.50 -13.10 4.56 -831.64 -3.79 -16.89 16 19 C 0.05 1.26 5.15 85.56 0.44 1.70 16 20 C 0.46 19.21 7.44 87.66 0.65 19.86 16 21 O -0.60 -31.17 14.93 -3.05 -0.05 -31.22 16 22 N -0.60 -26.81 5.09 -306.99 -1.56 -28.37 16 23 C -0.32 -18.26 10.16 84.04 0.85 -17.41 16 24 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 25 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 26 N -0.94 -55.80 13.96 21.66 0.30 -55.50 16 27 Si 0.96 37.91 27.74 68.60 1.90 39.81 16 28 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 29 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 30 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.72 6.42 -2.39 -0.02 1.71 16 34 H 0.22 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.19 3.07 5.74 -2.91 -0.02 3.06 16 36 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.13 2.48 3.63 -2.39 -0.01 2.47 16 38 H 0.07 1.39 7.93 -2.39 -0.02 1.37 16 39 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 40 H 0.07 1.23 7.84 -2.39 -0.02 1.21 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 1.94 7.11 -2.39 -0.02 1.92 16 44 H 0.12 2.66 7.97 -2.39 -0.02 2.65 16 45 H 0.08 1.85 6.98 -2.39 -0.02 1.83 16 46 H 0.39 14.42 5.76 -92.71 -0.53 13.89 16 47 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.69 368.90 0.87 -77.82 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.43 Total: 37.60 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 7.55 Total: 21.07 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -8.91 Total: -129.45 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.11 Total: -46.85 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -78.69 0.87 -77.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267527968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.244 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds