Wall clock time and date at job start Wed Apr 1 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35052 * 126.39716 * 2 1 4 4 N 1.30500 * 108.69919 * 180.26550 * 3 2 1 5 5 C 1.34127 * 109.25369 * 359.77086 * 4 3 2 6 6 C 1.34665 * 108.02711 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59797 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.56383 * 179.33055 * 7 6 5 9 9 C 1.53005 * 117.49608 * 33.64076 * 7 6 5 10 10 C 1.53001 * 60.00048 * 252.51427 * 9 7 6 11 11 H 1.08999 * 117.49528 * 107.51033 * 10 9 7 12 12 C 1.50696 * 117.49736 * 252.51261 * 10 9 7 13 13 O 1.21283 * 120.00283 * 68.61013 * 12 10 9 14 14 N 1.34781 * 119.99882 * 248.60858 * 12 10 9 15 15 C 1.46500 * 120.00005 * 180.02562 * 14 12 10 16 16 C 1.53936 * 113.83039 * 106.32600 * 15 14 12 17 17 N 1.47963 * 86.18081 * 90.64735 * 16 15 14 18 18 C 1.46905 * 110.99442 * 137.58205 * 17 16 15 19 19 C 1.50701 * 109.47159 * 70.64116 * 18 17 16 20 20 O 1.21289 * 119.99845 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99976 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00115 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00206 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00229 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00278 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47126 * 59.99216 * 26 24 22 28 28 H 1.48495 * 109.47269 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46591 * 299.99416 * 26 24 22 30 30 C 1.47962 * 90.76258 * 24.69072 * 17 16 15 31 31 H 1.08995 * 109.47370 * 270.11778 * 1 2 3 32 32 H 1.08999 * 109.47139 * 30.12217 * 1 2 3 33 33 H 1.09005 * 109.46774 * 150.11734 * 1 2 3 34 34 H 1.07995 * 125.64551 * 0.02562 * 3 2 1 35 35 H 1.08005 * 125.98823 * 179.97438 * 5 4 3 36 36 H 1.08997 * 117.49350 * 145.02304 * 9 7 6 37 37 H 1.08998 * 117.51734 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00027 * 359.97438 * 14 12 10 39 39 H 1.09002 * 112.93917 * 334.66429 * 15 14 12 40 40 H 1.09003 * 113.75649 * 204.96870 * 16 15 14 41 41 H 1.09007 * 113.75829 * 336.32990 * 16 15 14 42 42 H 1.08998 * 109.46445 * 190.64141 * 18 17 16 43 43 H 1.09000 * 109.47062 * 310.63837 * 18 17 16 44 44 H 0.97005 * 119.99820 * 0.02562 * 21 19 18 45 45 H 0.96991 * 120.00444 * 180.02562 * 25 24 22 46 46 H 1.08991 * 113.75516 * 220.99362 * 30 17 16 47 47 H 1.09003 * 113.75945 * 89.62499 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0871 0.0000 4 7 3.5096 0.6904 -0.0057 5 6 3.5460 -0.6504 -0.0045 6 6 2.2773 -1.1018 0.0028 7 6 1.8363 -2.5428 0.0062 8 1 0.7586 -2.7049 0.0238 9 6 2.7142 -3.5484 0.7539 10 6 2.6887 -3.5442 -0.7759 11 1 3.5685 -3.1610 -1.2928 12 6 1.9739 -4.6790 -1.4630 13 8 0.7673 -4.7726 -1.3833 14 7 2.6755 -5.5901 -2.1661 15 6 1.9806 -6.6930 -2.8345 16 6 1.9003 -6.5414 -4.3643 17 7 3.1771 -7.2879 -4.4061 18 6 3.1692 -8.2841 -5.4858 19 6 3.2351 -7.5820 -6.8176 20 8 3.2833 -6.3710 -6.8630 21 7 3.2404 -8.2999 -7.9583 22 6 3.3008 -7.6612 -9.1698 23 1 3.3446 -6.5829 -9.2103 24 6 3.3058 -8.4013 -10.3459 25 7 3.2530 -9.7135 -10.2967 26 14 3.3889 -7.5311 -11.9967 27 1 4.6369 -6.7299 -12.0717 28 1 3.3813 -8.5381 -13.0880 29 1 2.2148 -6.6335 -12.1427 30 6 2.8747 -7.9173 -3.1017 31 1 -0.3634 0.0021 1.0276 32 1 -0.3633 0.8889 -0.5157 33 1 -0.3633 -0.8911 -0.5120 34 1 1.9334 2.1144 0.0004 35 1 4.4368 -1.2611 -0.0086 36 1 2.2140 -4.3720 1.2633 37 1 3.6110 -3.1681 1.2430 38 1 3.6405 -5.5151 -2.2302 39 1 1.0271 -6.9396 -2.3675 40 1 1.0641 -7.0758 -4.8153 41 1 1.9829 -5.5104 -4.7084 42 1 4.0314 -8.9423 -5.3789 43 1 2.2536 -8.8728 -5.4303 44 1 3.2014 -9.2685 -7.9219 45 1 3.2568 -10.2301 -11.1176 46 1 3.7357 -7.9857 -2.4370 47 1 2.3235 -8.8542 -3.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267660453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:32 Heat of formation + Delta-G solvation = 61.873737 kcal Electronic energy + Delta-G solvation = -29097.735758 eV Core-core repulsion = 24898.031682 eV Total energy + Delta-G solvation = -4199.704077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44512 -40.62453 -39.42935 -37.75544 -36.70403 -34.34572 -34.10765 -33.72536 -31.28545 -30.02142 -29.48726 -27.33971 -26.06350 -25.90158 -24.68404 -23.66100 -23.24188 -21.71226 -20.59751 -19.94395 -19.63043 -19.19552 -17.99763 -17.83039 -17.13683 -16.37503 -16.10170 -16.02968 -15.55199 -15.30337 -14.99926 -14.74179 -14.65408 -14.36120 -14.19496 -13.86420 -13.74092 -13.36498 -13.33552 -13.11833 -13.09054 -12.80592 -12.54467 -12.22344 -12.01156 -11.58187 -11.51697 -11.40524 -11.22757 -11.04545 -10.98154 -10.75192 -10.45053 -10.25313 -10.22322 -10.04928 -9.86237 -9.50989 -9.13977 -8.70112 -8.54333 -8.25214 -7.97746 -6.42944 -3.83806 1.56543 2.29698 2.40020 2.82621 2.94925 3.19225 3.24921 3.29436 3.61760 3.87105 3.96941 4.09419 4.19272 4.27197 4.36960 4.42858 4.45923 4.49108 4.69557 4.73105 4.80336 4.87744 4.97083 4.98652 5.00202 5.20990 5.27696 5.30569 5.36564 5.45567 5.55341 5.60247 5.65646 5.68084 5.71207 5.84140 6.06173 6.13239 6.23741 6.39979 6.45725 6.58752 6.84511 7.11361 7.40497 7.53742 7.76729 8.04005 8.07752 8.59869 9.16576 9.52523 10.04303 10.74692 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.001823 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.146339 B =15359.124151 C =16566.800241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.457 5.457 3 C 0.180 3.820 4 N -0.492 5.492 5 C -0.023 4.023 6 C 0.008 3.992 7 C -0.053 4.053 8 H 0.124 0.876 9 C -0.131 4.131 10 C -0.173 4.173 11 H 0.132 0.868 12 C 0.547 3.453 13 O -0.545 6.545 14 N -0.695 5.695 15 C 0.113 3.887 16 C 0.010 3.990 17 N -0.453 5.453 18 C 0.009 3.991 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C -0.008 4.008 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.206 0.794 35 H 0.169 0.831 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.093 0.907 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 10.378 24.895 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.139 5.139 3 C -0.101 4.101 4 N -0.209 5.209 5 C -0.171 4.171 6 C -0.107 4.107 7 C -0.073 4.073 8 H 0.142 0.858 9 C -0.169 4.169 10 C -0.195 4.195 11 H 0.150 0.850 12 C 0.333 3.667 13 O -0.423 6.423 14 N -0.344 5.344 15 C 0.006 3.994 16 C -0.120 4.120 17 N -0.176 5.176 18 C -0.123 4.123 19 C 0.228 3.772 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.138 4.138 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.222 0.778 35 H 0.186 0.814 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.245 0.755 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.244 11.851 24.616 27.648 hybrid contribution -0.951 -1.308 -1.190 2.008 sum -5.195 10.542 23.426 26.209 Atomic orbital electron populations 1.22104 0.76423 1.05148 1.03739 1.45222 1.07738 1.06496 1.54454 1.24958 0.85593 0.93386 1.06201 1.70294 1.19416 1.11848 1.19377 1.22015 0.95565 0.91190 1.08301 1.20248 0.90990 0.87952 1.11474 1.20098 0.98746 0.84729 1.03744 0.85834 1.23145 1.02000 1.00609 0.91109 1.22399 1.02917 0.98366 0.95786 0.85033 1.19551 0.87100 0.82002 0.78022 1.90688 1.14158 1.75208 1.62233 1.45461 1.11203 1.26571 1.51209 1.22404 0.96514 0.86776 0.93673 1.24267 0.91778 1.02159 0.93753 1.68444 1.32508 1.16617 1.00005 1.22463 1.01834 0.95040 0.92916 1.19680 0.84659 0.88147 0.84727 1.90526 1.55100 1.13752 1.86927 1.41861 1.64315 1.09113 1.04776 1.19641 1.47549 0.93723 0.81969 0.88022 1.25264 0.97316 0.95479 0.99890 1.69600 1.50492 1.04778 1.29466 0.85915 0.79099 0.78574 0.80624 1.19872 1.20961 1.19924 1.24400 0.99303 0.96252 0.93861 0.90343 0.89201 0.89249 0.77755 0.81406 0.87449 0.87029 0.75526 0.87933 0.90719 0.88553 0.89098 0.92672 0.77502 0.91818 0.88906 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.96 59.85 0.66 0.97 16 2 N -0.46 -3.75 3.15 -121.37 -0.38 -4.13 16 3 C 0.18 1.58 12.56 -90.37 -1.14 0.44 16 4 N -0.49 -5.72 11.25 -14.66 -0.16 -5.89 16 5 C -0.02 -0.23 10.94 -17.81 -0.19 -0.43 16 6 C 0.01 0.08 6.63 -81.60 -0.54 -0.47 16 7 C -0.05 -0.46 5.53 -91.77 -0.51 -0.96 16 8 H 0.12 1.14 6.93 -51.93 -0.36 0.78 16 9 C -0.13 -0.87 9.75 -26.73 -0.26 -1.13 16 10 C -0.17 -1.49 5.71 -91.77 -0.52 -2.01 16 11 H 0.13 1.02 7.98 -51.93 -0.41 0.60 16 12 C 0.55 6.32 7.61 -10.99 -0.08 6.24 16 13 O -0.55 -8.08 15.88 5.55 0.09 -7.99 16 14 N -0.69 -7.60 5.38 -54.94 -0.30 -7.89 16 15 C 0.11 1.36 4.40 -69.62 -0.31 1.05 16 16 C 0.01 0.16 6.56 -2.76 -0.02 0.14 16 17 N -0.45 -7.09 5.95 -239.87 -1.43 -8.52 16 18 C 0.01 0.16 5.31 -4.97 -0.03 0.14 16 19 C 0.44 10.42 7.59 -10.99 -0.08 10.34 16 20 O -0.58 -15.71 15.12 5.55 0.08 -15.63 16 21 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 25 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 26 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 C -0.01 -0.09 7.72 -2.76 -0.02 -0.11 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.46 7.38 -51.93 -0.38 0.07 16 34 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.11 0.59 7.95 -51.93 -0.41 0.17 16 38 H 0.41 3.87 8.74 -40.82 -0.36 3.51 16 39 H 0.10 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.07 1.16 7.78 -51.93 -0.40 0.76 16 41 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -36.58 400.43 -10.45 -47.03 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.74 Total: 12.81 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.29 Total: 6.18 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -1.60 Total: -64.58 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.58 -10.45 -47.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267660453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.901 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds