Wall clock time and date at job start Wed Apr 1 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35052 * 126.39716 * 2 1 4 4 N 1.30500 * 108.69919 * 180.26550 * 3 2 1 5 5 C 1.34127 * 109.25369 * 359.77086 * 4 3 2 6 6 C 1.34665 * 108.02711 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59797 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.56383 * 179.33055 * 7 6 5 9 9 C 1.53005 * 117.49608 * 33.64076 * 7 6 5 10 10 C 1.53001 * 60.00048 * 252.51427 * 9 7 6 11 11 H 1.08999 * 117.49528 * 107.51033 * 10 9 7 12 12 C 1.50696 * 117.49736 * 252.51261 * 10 9 7 13 13 O 1.21283 * 120.00283 * 68.61013 * 12 10 9 14 14 N 1.34781 * 119.99882 * 248.60858 * 12 10 9 15 15 C 1.46500 * 120.00005 * 180.02562 * 14 12 10 16 16 C 1.53936 * 113.83039 * 106.32600 * 15 14 12 17 17 N 1.47963 * 86.18081 * 90.64735 * 16 15 14 18 18 C 1.46905 * 110.99442 * 137.58205 * 17 16 15 19 19 C 1.50701 * 109.47159 * 70.64116 * 18 17 16 20 20 O 1.21289 * 119.99845 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99976 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00115 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00206 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00229 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00278 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47126 * 59.99216 * 26 24 22 28 28 H 1.48495 * 109.47269 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46591 * 299.99416 * 26 24 22 30 30 C 1.47962 * 90.76258 * 24.69072 * 17 16 15 31 31 H 1.08995 * 109.47370 * 270.11778 * 1 2 3 32 32 H 1.08999 * 109.47139 * 30.12217 * 1 2 3 33 33 H 1.09005 * 109.46774 * 150.11734 * 1 2 3 34 34 H 1.07995 * 125.64551 * 0.02562 * 3 2 1 35 35 H 1.08005 * 125.98823 * 179.97438 * 5 4 3 36 36 H 1.08997 * 117.49350 * 145.02304 * 9 7 6 37 37 H 1.08998 * 117.51734 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00027 * 359.97438 * 14 12 10 39 39 H 1.09002 * 112.93917 * 334.66429 * 15 14 12 40 40 H 1.09003 * 113.75649 * 204.96870 * 16 15 14 41 41 H 1.09007 * 113.75829 * 336.32990 * 16 15 14 42 42 H 1.08998 * 109.46445 * 190.64141 * 18 17 16 43 43 H 1.09000 * 109.47062 * 310.63837 * 18 17 16 44 44 H 0.97005 * 119.99820 * 0.02562 * 21 19 18 45 45 H 0.96991 * 120.00444 * 180.02562 * 25 24 22 46 46 H 1.08991 * 113.75516 * 220.99362 * 30 17 16 47 47 H 1.09003 * 113.75945 * 89.62499 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0871 0.0000 4 7 3.5096 0.6904 -0.0057 5 6 3.5460 -0.6504 -0.0045 6 6 2.2773 -1.1018 0.0028 7 6 1.8363 -2.5428 0.0062 8 1 0.7586 -2.7049 0.0238 9 6 2.7142 -3.5484 0.7539 10 6 2.6887 -3.5442 -0.7759 11 1 3.5685 -3.1610 -1.2928 12 6 1.9739 -4.6790 -1.4630 13 8 0.7673 -4.7726 -1.3833 14 7 2.6755 -5.5901 -2.1661 15 6 1.9806 -6.6930 -2.8345 16 6 1.9003 -6.5414 -4.3643 17 7 3.1771 -7.2879 -4.4061 18 6 3.1692 -8.2841 -5.4858 19 6 3.2351 -7.5820 -6.8176 20 8 3.2833 -6.3710 -6.8630 21 7 3.2404 -8.2999 -7.9583 22 6 3.3008 -7.6612 -9.1698 23 1 3.3446 -6.5829 -9.2103 24 6 3.3058 -8.4013 -10.3459 25 7 3.2530 -9.7135 -10.2967 26 14 3.3889 -7.5311 -11.9967 27 1 4.6369 -6.7299 -12.0717 28 1 3.3813 -8.5381 -13.0880 29 1 2.2148 -6.6335 -12.1427 30 6 2.8747 -7.9173 -3.1017 31 1 -0.3634 0.0021 1.0276 32 1 -0.3633 0.8889 -0.5157 33 1 -0.3633 -0.8911 -0.5120 34 1 1.9334 2.1144 0.0004 35 1 4.4368 -1.2611 -0.0086 36 1 2.2140 -4.3720 1.2633 37 1 3.6110 -3.1681 1.2430 38 1 3.6405 -5.5151 -2.2302 39 1 1.0271 -6.9396 -2.3675 40 1 1.0641 -7.0758 -4.8153 41 1 1.9829 -5.5104 -4.7084 42 1 4.0314 -8.9423 -5.3789 43 1 2.2536 -8.8728 -5.4303 44 1 3.2014 -9.2685 -7.9219 45 1 3.2568 -10.2301 -11.1176 46 1 3.7357 -7.9857 -2.4370 47 1 2.3235 -8.8542 -3.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267660453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:31 Heat of formation + Delta-G solvation = 33.992611 kcal Electronic energy + Delta-G solvation = -29098.944775 eV Core-core repulsion = 24898.031682 eV Total energy + Delta-G solvation = -4200.913093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.09425 -41.68589 -40.54828 -39.45524 -37.50018 -35.98201 -34.95721 -34.90437 -33.30432 -31.21335 -30.30689 -27.82415 -27.50596 -27.10156 -25.96697 -24.59462 -24.20506 -22.35342 -21.44000 -21.22004 -20.71429 -20.35547 -19.90299 -18.66132 -17.89293 -17.80339 -17.35800 -16.75961 -16.60337 -16.54960 -16.41493 -15.96098 -15.76920 -15.51817 -15.29452 -15.03424 -14.84918 -14.47931 -14.44094 -13.83680 -13.78414 -13.64063 -13.55864 -13.42836 -13.42418 -13.02726 -12.80037 -12.68805 -12.47844 -12.35748 -12.15393 -12.05529 -11.86750 -11.67773 -11.51567 -10.99588 -10.97062 -10.48631 -10.35177 -10.14035 -10.03162 -9.69094 -9.22306 -8.48470 -5.97113 0.91001 1.37504 1.39423 1.44679 1.50238 1.82452 2.03998 2.07685 2.16584 2.27142 2.82249 2.93937 3.17931 3.24356 3.42986 3.56514 3.63000 3.78215 3.82150 3.88786 3.93870 4.09476 4.12319 4.21742 4.28968 4.35967 4.39905 4.45984 4.49273 4.54999 4.62202 4.65117 4.69305 4.77203 4.80499 4.88400 4.94739 5.08314 5.33778 5.38850 5.41896 5.50942 5.73496 5.84751 6.04166 6.27039 6.52773 6.58579 7.09528 7.11063 7.18714 7.54556 8.10832 8.68594 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.001823 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.146339 B =15359.124151 C =16566.800241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.180 3.820 4 N -0.535 5.535 5 C -0.042 4.042 6 C 0.001 3.999 7 C -0.059 4.059 8 H 0.115 0.885 9 C -0.105 4.105 10 C -0.178 4.178 11 H 0.140 0.860 12 C 0.545 3.455 13 O -0.581 6.581 14 N -0.690 5.690 15 C 0.125 3.875 16 C 0.001 3.999 17 N -0.474 5.474 18 C 0.022 3.978 19 C 0.438 3.562 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.273 1.273 30 C 0.010 3.990 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.178 0.822 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.417 0.583 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.118 0.882 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 9.720 26.262 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.142 5.142 3 C -0.102 4.102 4 N -0.253 5.253 5 C -0.190 4.190 6 C -0.115 4.115 7 C -0.079 4.079 8 H 0.133 0.867 9 C -0.142 4.142 10 C -0.199 4.199 11 H 0.158 0.842 12 C 0.333 3.667 13 O -0.462 6.462 14 N -0.340 5.340 15 C 0.018 3.982 16 C -0.129 4.129 17 N -0.198 5.198 18 C -0.110 4.110 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.199 1.199 30 C -0.119 4.119 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.195 0.805 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.136 0.864 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.186 11.158 26.003 28.604 hybrid contribution -1.007 -1.055 -1.580 2.150 sum -5.193 10.103 24.424 26.936 Atomic orbital electron populations 1.22339 0.74493 1.05876 1.05072 1.45472 1.08991 1.06048 1.53648 1.25608 0.85092 0.94750 1.04734 1.70260 1.21226 1.12619 1.21226 1.22285 0.96451 0.91214 1.09018 1.20381 0.91076 0.88560 1.11464 1.20062 0.98456 0.84653 1.04738 0.86726 1.23248 1.01965 0.99571 0.89459 1.22350 1.02968 0.97512 0.97103 0.84186 1.20022 0.86744 0.82307 0.77604 1.90669 1.15763 1.76131 1.63613 1.45465 1.11608 1.26286 1.50598 1.22258 0.97313 0.87610 0.91033 1.24220 0.91927 1.00098 0.96684 1.68432 1.32652 1.17268 1.01419 1.22378 1.04023 0.95000 0.89561 1.20841 0.82246 0.87906 0.86442 1.90498 1.56334 1.15948 1.87934 1.41935 1.65076 1.09323 1.04809 1.19581 1.49926 0.92957 0.83891 0.90630 1.26021 0.96330 0.96234 1.02668 1.69655 1.50175 1.05527 1.30595 0.85014 0.78875 0.77812 0.76788 1.19787 1.19302 1.19856 1.24487 1.00123 0.96287 0.91006 0.88703 0.87004 0.90019 0.74581 0.80458 0.86787 0.85148 0.74560 0.87574 0.91088 0.92387 0.86812 0.90190 0.76948 0.91264 0.86401 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.96 127.77 1.40 1.91 16 2 N -0.46 -7.16 3.15 -537.89 -1.70 -8.85 16 3 C 0.18 2.98 12.56 180.26 2.26 5.25 16 4 N -0.53 -12.34 11.25 -200.31 -2.25 -14.59 16 5 C -0.04 -0.86 10.94 83.52 0.91 0.05 16 6 C 0.00 0.01 6.63 40.95 0.27 0.28 16 7 C -0.06 -0.97 5.53 -11.54 -0.06 -1.04 16 8 H 0.11 2.11 6.93 -2.39 -0.02 2.09 16 9 C -0.10 -1.22 9.75 30.60 0.30 -0.92 16 10 C -0.18 -2.92 5.71 -11.54 -0.07 -2.98 16 11 H 0.14 2.05 7.98 -2.39 -0.02 2.04 16 12 C 0.55 12.34 7.61 87.65 0.67 13.01 16 13 O -0.58 -17.26 15.88 -3.04 -0.05 -17.31 16 14 N -0.69 -14.41 5.38 -446.11 -2.40 -16.81 16 15 C 0.12 2.85 4.40 46.56 0.20 3.05 16 16 C 0.00 0.04 6.56 86.41 0.57 0.60 16 17 N -0.47 -14.23 5.95 -912.82 -5.43 -19.66 16 18 C 0.02 0.72 5.31 85.56 0.45 1.18 16 19 C 0.44 20.90 7.59 87.66 0.67 21.56 16 20 O -0.62 -34.86 15.12 -3.06 -0.05 -34.91 16 21 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 22 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 26 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.01 0.18 7.72 86.41 0.67 0.85 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.80 7.38 -2.38 -0.02 0.79 16 34 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.13 1.06 7.95 -2.39 -0.02 1.04 16 38 H 0.42 7.33 8.74 -92.71 -0.81 6.52 16 39 H 0.11 2.42 7.51 -2.39 -0.02 2.40 16 40 H 0.07 2.24 7.78 -2.39 -0.02 2.22 16 41 H 0.06 2.25 8.09 -2.38 -0.02 2.23 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.08 2.26 7.69 -2.39 -0.02 2.24 16 44 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 45 H 0.28 14.07 8.31 -92.72 -0.77 13.30 16 46 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.11 1.58 7.79 -2.39 -0.02 1.56 16 Total: -1.00 -82.08 400.43 -2.18 -84.26 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.52 Total: 38.73 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 9.52 Total: 24.24 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -13.12 Total: -140.42 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.09 Total: -52.21 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.08 -2.18 -84.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267660453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.257 kcal (2) G-P(sol) polarization free energy of solvation -82.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds