Wall clock time and date at job start Wed Apr 1 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99630 * 2 1 4 4 C 1.39183 * 120.00203 * 179.97438 * 2 1 3 5 5 C 1.39424 * 120.83088 * 174.34247 * 4 2 1 6 6 C 1.38231 * 119.26392 * 180.02562 * 5 4 2 7 7 N 1.31652 * 120.99397 * 359.71965 * 6 5 4 8 8 C 1.32828 * 121.82474 * 0.57353 * 7 6 5 9 9 C 1.48181 * 119.68647 * 179.70781 * 8 7 6 10 10 O 1.21518 * 120.00027 * 179.72863 * 9 8 7 11 11 N 1.34774 * 120.00314 * 359.72678 * 9 8 7 12 12 C 1.46501 * 120.00434 * 180.02562 * 11 9 8 13 13 C 1.53514 * 114.17245 * 154.99821 * 12 11 9 14 14 N 1.47475 * 87.93230 * 87.81548 * 13 12 11 15 15 C 1.46892 * 111.00274 * 138.70548 * 14 13 12 16 16 C 1.50702 * 109.47346 * 169.99702 * 15 14 13 17 17 O 1.21286 * 119.99771 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99937 * 179.72649 * 16 15 14 19 19 C 1.37100 * 120.00014 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99667 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99929 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00377 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47207 * 89.99941 * 23 21 19 25 25 H 1.48498 * 109.47165 * 210.00068 * 23 21 19 26 26 H 1.48503 * 109.47021 * 330.00009 * 23 21 19 27 27 C 1.47475 * 87.83851 * 27.00872 * 14 13 12 28 28 C 1.39032 * 120.62443 * 359.42699 * 8 7 6 29 29 H 1.09003 * 109.47204 * 185.05076 * 1 2 3 30 30 H 1.09000 * 109.47767 * 305.05285 * 1 2 3 31 31 H 1.09002 * 109.47045 * 65.05788 * 1 2 3 32 32 H 1.09000 * 109.46934 * 269.99938 * 3 2 1 33 33 H 1.09003 * 109.47475 * 29.99529 * 3 2 1 34 34 H 1.08998 * 109.47206 * 149.99856 * 3 2 1 35 35 H 1.07997 * 120.36805 * 0.02562 * 5 4 2 36 36 H 1.08001 * 119.50173 * 180.02562 * 6 5 4 37 37 H 0.97006 * 119.99779 * 359.97438 * 11 9 8 38 38 H 1.09006 * 113.25230 * 22.04354 * 12 11 9 39 39 H 1.08994 * 113.47368 * 333.04450 * 13 12 11 40 40 H 1.09005 * 113.52589 * 202.58704 * 13 12 11 41 41 H 1.09000 * 109.47559 * 49.99259 * 15 14 13 42 42 H 1.09000 * 109.47136 * 289.99445 * 15 14 13 43 43 H 0.97000 * 120.00516 * 359.97438 * 18 16 15 44 44 H 0.96996 * 120.00024 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.47742 * 87.76133 * 27 14 13 46 46 H 1.09000 * 113.47925 * 218.22557 * 27 14 13 47 47 H 1.08003 * 120.52336 * 180.29593 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1610 -1.2053 0.0005 5 6 3.5500 -1.2285 -0.1175 6 6 4.2083 -2.4440 -0.1137 7 7 3.5440 -3.5744 0.0048 8 6 2.2205 -3.6009 0.1141 9 6 1.5203 -4.9009 0.2386 10 8 0.3101 -4.9315 0.3439 11 7 2.2256 -6.0493 0.2351 12 6 1.5333 -7.3346 0.3576 13 6 2.2994 -8.5211 -0.2441 14 7 2.9740 -8.6770 1.0581 15 6 3.0908 -10.0948 1.4241 16 6 3.9919 -10.2313 2.6243 17 8 4.4883 -9.2445 3.1251 18 7 4.2421 -11.4493 3.1441 19 6 5.0614 -11.5735 4.2363 20 1 5.5067 -10.6951 4.6799 21 6 5.3189 -12.8292 4.7725 22 7 4.7767 -13.8977 4.2331 23 14 6.4359 -12.9983 6.2602 24 1 5.6248 -12.9086 7.5010 25 1 7.1263 -14.3122 6.2141 26 1 7.4445 -11.9084 6.2484 27 6 1.7864 -8.0658 1.6835 28 6 1.4865 -2.4201 0.1186 29 1 -0.3634 -1.0237 0.0905 30 1 -0.3635 0.5902 0.8412 31 1 -0.3633 0.4334 -0.9318 32 1 2.3791 1.5834 -1.0277 33 1 1.6083 2.0285 0.5138 34 1 3.1498 1.1385 0.5138 35 1 4.1055 -0.3070 -0.2108 36 1 5.2843 -2.4663 -0.2045 37 1 3.1917 -6.0249 0.1506 38 1 0.4837 -7.2874 0.0672 39 1 2.9743 -8.2376 -1.0516 40 1 1.6600 -9.3643 -0.5055 41 1 3.5125 -10.6525 0.5878 42 1 2.1039 -10.4907 1.6639 43 1 3.8419 -12.2382 2.7460 44 1 4.9568 -14.7743 4.6073 45 1 1.0094 -8.7870 1.9369 46 1 2.0267 -7.3964 2.5095 47 1 0.4108 -2.4434 0.2124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267672642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:14 Heat of formation + Delta-G solvation = 30.049091 kcal Electronic energy + Delta-G solvation = -29108.077149 eV Core-core repulsion = 24906.993052 eV Total energy + Delta-G solvation = -4201.084097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96826 -40.28851 -38.79267 -37.64366 -37.22892 -34.04248 -33.69645 -31.86252 -31.53002 -31.18038 -29.72273 -28.78561 -25.97051 -25.84635 -25.65290 -24.36982 -23.30143 -22.47103 -20.66582 -19.75648 -19.17625 -18.39527 -17.82537 -17.29696 -16.53535 -16.16080 -15.96218 -15.73214 -15.58187 -15.32977 -15.10808 -14.87627 -14.64639 -14.51550 -14.40399 -14.10695 -13.70844 -13.53521 -13.20443 -13.10617 -13.04761 -12.81158 -12.60365 -12.55129 -12.02490 -11.72122 -11.54502 -11.37712 -11.10932 -11.01669 -11.00524 -10.62498 -10.36218 -10.35067 -10.16357 -9.68602 -9.46769 -9.44612 -9.00256 -8.73430 -8.13879 -8.10443 -7.90215 -6.36431 -3.76845 0.51398 1.16751 2.48718 2.65725 3.02120 3.21512 3.29566 3.35969 3.75254 3.96938 4.02072 4.09287 4.28595 4.35649 4.40555 4.50190 4.66835 4.78388 4.81306 4.89091 4.92385 5.02494 5.07302 5.09509 5.16005 5.22888 5.25150 5.37935 5.43410 5.47082 5.51278 5.64661 5.65863 5.72597 5.76439 5.77870 6.09841 6.22269 6.31895 6.51377 6.59153 6.61215 6.82682 7.18831 7.44454 7.60279 7.77952 8.11924 8.15692 8.68399 9.24319 9.60898 10.13804 10.81580 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.001775 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.399857 B =15772.903789 C =16596.445617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.627 5.627 3 C 0.091 3.909 4 C 0.242 3.758 5 C -0.234 4.234 6 C 0.142 3.858 7 N -0.496 5.496 8 C 0.123 3.877 9 C 0.574 3.426 10 O -0.540 6.540 11 N -0.677 5.677 12 C 0.114 3.886 13 C -0.013 4.013 14 N -0.439 5.439 15 C 0.008 3.992 16 C 0.447 3.553 17 O -0.574 6.574 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.008 4.008 28 C -0.190 4.190 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.421 0.579 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 25.898 -13.650 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.338 5.338 3 C -0.052 4.052 4 C 0.131 3.869 5 C -0.260 4.260 6 C -0.016 4.016 7 N -0.211 5.211 8 C -0.015 4.015 9 C 0.359 3.641 10 O -0.417 6.417 11 N -0.327 5.327 12 C 0.007 3.993 13 C -0.143 4.143 14 N -0.161 5.161 15 C -0.124 4.124 16 C 0.232 3.768 17 O -0.456 6.456 18 N -0.206 5.206 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.138 4.138 28 C -0.216 4.216 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.259 0.741 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.104 25.943 -13.038 30.145 hybrid contribution -0.378 -0.332 0.445 0.672 sum -8.482 25.611 -12.593 29.773 Atomic orbital electron populations 1.21821 0.78772 1.03821 1.01515 1.46271 1.05548 1.02974 1.79054 1.21692 0.97339 0.84555 1.01567 1.17964 0.91427 0.86047 0.91412 1.21828 0.92768 1.00549 1.10821 1.22524 1.00232 0.86481 0.92399 1.67634 1.07571 1.30930 1.14993 1.20785 0.89900 0.93041 0.97778 1.17898 0.86370 0.83296 0.76511 1.90759 1.13362 1.87122 1.50454 1.45351 1.11959 1.03939 1.71477 1.22022 0.97364 0.82619 0.97248 1.24290 0.97377 0.96908 0.95756 1.68846 1.31452 1.13447 1.02331 1.22509 0.99826 0.90857 0.99237 1.19680 0.86194 0.84311 0.86597 1.90529 1.54660 1.37405 1.63048 1.41871 1.43791 1.06613 1.28309 1.19695 1.23263 0.94268 1.05411 0.88002 1.25237 0.98473 0.94870 0.99438 1.69608 1.44695 0.98571 1.41679 0.85870 0.79919 0.77595 0.80974 1.20490 1.20964 1.19442 1.24374 0.92542 0.98587 0.98319 1.21599 1.01904 0.90417 1.07651 0.89907 0.92037 0.92418 0.92935 0.91090 0.91030 0.84577 0.82042 0.74147 0.87116 0.89124 0.90047 0.89324 0.92137 0.77582 0.91973 0.90411 0.89104 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.63 59.85 0.64 1.08 16 2 N -0.63 -4.32 3.39 -187.37 -0.64 -4.95 16 3 C 0.09 0.38 10.13 59.85 0.61 0.98 16 4 C 0.24 2.21 6.56 -83.63 -0.55 1.66 16 5 C -0.23 -1.90 9.23 -39.14 -0.36 -2.26 16 6 C 0.14 1.33 11.17 -17.63 -0.20 1.13 16 7 N -0.50 -6.06 9.54 -9.89 -0.09 -6.16 16 8 C 0.12 1.57 6.74 -83.06 -0.56 1.01 16 9 C 0.57 8.19 7.81 -12.18 -0.10 8.09 16 10 O -0.54 -8.70 15.91 5.35 0.09 -8.61 16 11 N -0.68 -9.21 5.38 -54.37 -0.29 -9.50 16 12 C 0.11 1.48 4.59 -67.72 -0.31 1.17 16 13 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16 14 N -0.44 -7.36 5.82 -246.13 -1.43 -8.79 16 15 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 16 C 0.45 10.90 7.85 -10.98 -0.09 10.82 16 17 O -0.57 -16.25 16.01 5.55 0.09 -16.16 16 18 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 19 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 23 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.01 -0.12 7.53 -7.55 -0.06 -0.18 16 28 C -0.19 -2.09 8.89 -38.84 -0.35 -2.44 16 29 H 0.08 0.50 5.39 -51.93 -0.28 0.22 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.07 0.26 6.50 -51.93 -0.34 -0.07 16 35 H 0.14 0.74 6.43 -52.49 -0.34 0.40 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.42 5.80 8.09 -40.82 -0.33 5.47 16 38 H 0.11 1.36 7.45 -51.93 -0.39 0.98 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.84 7.91 -51.93 -0.41 0.42 16 41 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 42 H 0.06 0.96 7.30 -51.93 -0.38 0.58 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.15 1.54 5.45 -52.48 -0.29 1.26 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -35.80 394.55 -8.68 -44.48 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.34 Total: 13.50 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -1.64 Total: 12.82 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.79 Total: -68.44 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.17 Total: -24.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.80 -8.68 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267672642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.529 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds