Wall clock time and date at job start Wed Apr 1 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28866 * 125.95247 * 2 1 4 4 C 1.30940 * 109.00086 * 180.28473 * 3 2 1 5 5 N 1.32954 * 108.47137 * 359.72486 * 4 3 2 6 6 C 1.32141 * 107.32407 * 359.97438 * 5 4 3 7 7 C 1.47769 * 126.45097 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00241 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99624 * 0.02890 * 7 6 5 10 10 C 1.47654 * 125.81557 * 359.97284 * 9 7 6 11 11 C 1.54975 * 104.85320 * 156.01497 * 10 9 7 12 12 C 1.55323 * 101.66850 * 36.60968 * 11 10 9 13 13 C 1.46232 * 125.81350 * 179.97438 * 9 7 6 14 14 C 1.53893 * 110.91036 * 60.12773 * 13 9 7 15 15 C 1.54641 * 101.59792 * 263.46404 * 14 13 9 16 16 N 1.46843 * 105.50394 * 335.23051 * 15 14 13 17 17 C 1.46499 * 124.36670 * 196.85473 * 16 15 14 18 18 C 1.53004 * 109.47198 * 90.00262 * 17 16 15 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48504 * 109.47266 * 60.00049 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47383 * 299.99456 * 23 21 19 27 27 C 1.34652 * 111.26593 * 17.12187 * 16 15 14 28 28 O 1.21280 * 125.07317 * 178.88448 * 27 16 15 29 29 H 1.08994 * 109.47531 * 270.17996 * 1 2 3 30 30 H 1.09001 * 109.46741 * 30.18231 * 1 2 3 31 31 H 1.09001 * 109.47130 * 150.17944 * 1 2 3 32 32 H 1.07997 * 125.76468 * 179.74521 * 4 3 2 33 33 H 1.09000 * 110.35928 * 37.16972 * 10 9 7 34 34 H 1.09000 * 110.45070 * 274.90793 * 10 9 7 35 35 H 1.09000 * 110.99225 * 278.51096 * 11 10 9 36 36 H 1.09006 * 110.98544 * 154.70157 * 11 10 9 37 37 H 1.09000 * 110.76605 * 206.79137 * 12 11 10 38 38 H 1.09001 * 110.92512 * 83.47426 * 12 11 10 39 39 H 1.09000 * 111.00209 * 145.38655 * 14 13 9 40 40 H 1.09006 * 111.00009 * 21.54394 * 14 13 9 41 41 H 1.08996 * 110.24094 * 216.21534 * 15 14 13 42 42 H 1.09008 * 110.23617 * 94.23702 * 15 14 13 43 43 H 1.09000 * 109.47602 * 329.99812 * 17 16 15 44 44 H 1.09007 * 109.47337 * 209.99527 * 17 16 15 45 45 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 46 46 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 47 47 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6614 -0.0062 5 7 3.5093 -0.6677 -0.0041 6 6 2.2588 -1.0945 0.0039 7 6 1.8118 -2.5029 0.0084 8 8 0.6246 -2.7639 0.0154 9 7 2.7206 -3.4983 0.0048 10 6 4.1874 -3.3290 -0.0041 11 6 4.7425 -4.6420 0.6038 12 6 3.7535 -5.6951 0.0333 13 6 2.4218 -4.9297 0.0090 14 6 1.6014 -5.3232 -1.2321 15 6 0.1600 -5.2987 -0.6726 16 7 0.2958 -5.5245 0.7720 17 6 -0.8028 -5.9291 1.6527 18 6 -0.8721 -7.4563 1.7131 19 6 -2.0027 -7.8725 2.6185 20 1 -2.6106 -7.1226 3.1028 21 6 -2.2568 -9.2104 2.8335 22 7 -1.5162 -10.1235 2.2441 23 14 -3.6532 -9.7262 3.9620 24 1 -4.9369 -9.1974 3.4347 25 1 -3.7174 -11.2086 4.0243 26 1 -3.4159 -9.1829 5.3235 27 6 1.5591 -5.3062 1.1838 28 8 1.9447 -5.4011 2.3298 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3633 -0.8916 -0.5110 32 1 4.3333 1.3156 -0.0116 33 1 4.4744 -2.4755 0.6101 34 1 4.5497 -3.2003 -1.0241 35 1 4.7004 -4.6165 1.6927 36 1 5.7585 -4.8332 0.2583 37 1 3.6890 -6.5613 0.6918 38 1 4.0442 -5.9972 -0.9728 39 1 1.8695 -6.3218 -1.5771 40 1 1.7235 -4.5902 -2.0296 41 1 -0.4335 -6.0934 -1.1244 42 1 -0.3011 -4.3290 -0.8610 43 1 -1.7430 -5.5378 1.2640 44 1 -0.6307 -5.5334 2.6537 45 1 0.0681 -7.8476 2.1017 46 1 -1.0442 -7.8520 0.7121 47 1 -1.6948 -11.0648 2.3957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268823667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:41 Heat of formation + Delta-G solvation = 25.449614 kcal Electronic energy + Delta-G solvation = -32055.625747 eV Core-core repulsion = 27854.342202 eV Total energy + Delta-G solvation = -4201.283545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.55225 -42.55003 -40.05562 -38.45006 -37.48154 -35.73372 -35.50887 -33.84340 -33.14928 -32.35914 -30.82272 -28.98642 -28.72379 -27.02080 -26.07669 -24.79159 -23.68009 -23.64421 -22.99324 -22.11194 -21.10021 -20.00315 -18.73572 -18.57908 -18.11697 -17.98810 -17.62438 -17.14093 -16.69361 -16.52144 -16.15880 -15.93663 -15.62626 -15.37743 -14.98704 -14.73140 -14.56107 -14.51059 -14.30785 -14.20167 -14.03080 -13.82078 -13.59651 -13.40218 -13.34117 -13.13958 -12.86720 -12.66668 -12.49725 -12.27919 -12.06827 -12.00109 -11.87561 -11.76688 -11.47650 -11.46138 -11.36545 -11.35442 -10.93007 -10.67359 -10.60989 -9.81245 -9.51839 -8.25100 -6.38064 -0.10131 0.82489 1.35608 1.37409 1.41644 1.42131 1.49398 1.91019 1.98987 2.14955 2.40205 2.79586 3.07955 3.19328 3.29635 3.41513 3.54683 3.69876 3.77907 3.98173 4.17335 4.19588 4.22503 4.26620 4.27288 4.48582 4.55959 4.58578 4.65217 4.73975 4.82256 4.85424 4.89252 4.90152 5.03250 5.10907 5.12358 5.17876 5.27798 5.29408 5.31351 5.36256 5.43465 5.56702 5.79202 6.09987 6.14190 6.27170 6.63198 6.75655 6.99945 7.15015 7.31357 8.86843 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002992 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.251051 B = 9356.056871 C =10389.882286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.261 5.261 3 N -0.316 5.316 4 C 0.162 3.838 5 N -0.475 5.475 6 C 0.153 3.847 7 C 0.610 3.390 8 O -0.534 6.534 9 N -0.571 5.571 10 C 0.103 3.897 11 C -0.127 4.127 12 C -0.110 4.110 13 C 0.139 3.861 14 C -0.123 4.123 15 C 0.095 3.905 16 N -0.599 5.599 17 C 0.146 3.854 18 C 0.029 3.971 19 C -0.549 4.549 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.271 1.271 27 C 0.498 3.502 28 O -0.580 6.580 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.261 0.739 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.044 0.956 45 H -0.024 1.024 46 H 0.004 0.996 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.632 20.433 -13.272 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.057 5.057 3 N -0.154 5.154 4 C -0.137 4.137 5 N -0.203 5.203 6 C -0.122 4.122 7 C 0.395 3.605 8 O -0.409 6.409 9 N -0.304 5.304 10 C -0.018 4.018 11 C -0.165 4.165 12 C -0.148 4.148 13 C 0.050 3.950 14 C -0.161 4.161 15 C -0.027 4.027 16 N -0.329 5.329 17 C 0.024 3.976 18 C -0.009 4.009 19 C -0.587 4.587 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.793 3.207 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.196 1.196 27 C 0.284 3.716 28 O -0.460 6.460 29 H 0.112 0.888 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.277 0.723 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.063 0.937 45 H -0.005 1.005 46 H 0.022 0.978 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.096 20.538 -12.669 26.993 hybrid contribution -1.098 -0.724 1.162 1.755 sum 10.997 19.814 -11.506 25.415 Atomic orbital electron populations 1.22688 0.70156 1.07457 1.06027 1.47290 1.10317 1.02251 1.45843 1.74242 1.04999 1.13691 1.22483 1.26802 0.94876 0.90503 1.01508 1.71282 1.17652 1.12018 1.19329 1.23779 0.87671 0.91592 1.09137 1.16240 0.84906 0.81781 0.77564 1.90803 1.15993 1.82969 1.51152 1.47960 1.09023 1.03208 1.70224 1.22905 0.75731 0.99414 1.03706 1.22896 1.00584 0.92708 1.00275 1.22625 0.89951 0.97503 1.04724 1.21275 0.97796 0.81906 0.94002 1.23021 0.92096 1.05139 0.95841 1.22459 0.99044 1.02827 0.78361 1.48510 1.09067 1.64755 1.10600 1.21300 0.88178 0.95926 0.92166 1.19164 0.94942 0.90919 0.95827 1.21490 1.15730 0.92651 1.28861 0.91926 1.25983 0.99377 0.96591 0.97535 1.70092 1.41007 1.01156 1.44647 0.85440 0.79185 0.77136 0.78920 1.18516 1.20484 1.19640 1.21417 0.83930 0.76396 0.89870 1.90634 1.77533 1.54979 1.22851 0.88814 0.85898 0.86983 0.72321 0.88487 0.87633 0.92760 0.85466 0.91494 0.85257 0.86890 0.86547 0.90454 0.88938 0.89888 0.93734 1.00549 0.97795 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.85 127.77 1.39 2.59 16 2 N -0.26 -5.57 3.74 -361.54 -1.35 -6.92 16 3 N -0.32 -6.36 12.08 -61.29 -0.74 -7.10 16 4 C 0.16 2.71 13.03 180.79 2.36 5.07 16 5 N -0.47 -9.81 8.53 -193.33 -1.65 -11.46 16 6 C 0.15 3.64 7.67 136.70 1.05 4.69 16 7 C 0.61 16.40 7.46 86.76 0.65 17.05 16 8 O -0.53 -16.06 10.73 -3.88 -0.04 -16.10 16 9 N -0.57 -14.15 2.85 -773.65 -2.20 -16.35 16 10 C 0.10 1.86 6.17 86.83 0.54 2.40 16 11 C -0.13 -2.29 7.09 32.07 0.23 -2.06 16 12 C -0.11 -2.35 5.87 31.60 0.19 -2.16 16 13 C 0.14 3.80 0.85 3.36 0.00 3.80 16 14 C -0.12 -2.74 5.95 31.45 0.19 -2.55 16 15 C 0.09 2.84 6.39 86.87 0.56 3.39 16 16 N -0.60 -24.07 2.69 -818.10 -2.20 -26.27 16 17 C 0.15 6.86 5.89 86.38 0.51 7.37 16 18 C 0.03 1.66 5.30 29.85 0.16 1.81 16 19 C -0.55 -32.52 9.11 25.60 0.23 -32.29 16 20 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 21 C 0.00 0.21 5.46 84.65 0.46 0.68 16 22 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 23 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.50 20.18 6.19 87.63 0.54 20.72 16 28 O -0.58 -28.87 17.43 -3.03 -0.05 -28.92 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.92 6.33 -2.39 -0.02 1.91 16 32 H 0.26 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.10 1.91 6.22 -2.39 -0.01 1.89 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.82 7.80 -2.39 -0.02 1.80 16 38 H 0.13 1.70 7.81 -2.39 -0.02 1.68 16 39 H 0.11 2.12 7.83 -2.39 -0.02 2.10 16 40 H 0.12 1.98 8.07 -2.38 -0.02 1.96 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.09 2.69 5.92 -2.38 -0.01 2.68 16 43 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.04 2.26 7.92 -2.38 -0.02 2.24 16 45 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 46 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.96 380.77 4.10 -79.87 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.99 Total: 12.96 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 9.04 Total: 30.50 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -7.86 Total: -125.57 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.09 Total: -45.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -83.96 4.10 -79.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268823667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.315 kcal (2) G-P(sol) polarization free energy of solvation -83.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds