Wall clock time and date at job start Wed Apr 1 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34587 * 125.74476 * 2 1 4 4 N 1.30869 * 107.62370 * 179.70029 * 3 2 1 5 5 C 1.34545 * 107.27078 * 0.26602 * 4 3 2 6 6 C 1.47877 * 126.05139 * 180.02562 * 5 4 3 7 7 O 1.21547 * 120.00296 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99609 * 359.97438 * 6 5 4 9 9 C 1.47139 * 125.60921 * 0.02628 * 8 6 5 10 10 C 1.54586 * 107.32942 * 180.89927 * 9 8 6 11 11 C 1.53704 * 102.78332 * 20.88100 * 10 9 8 12 12 C 1.53210 * 111.54861 * 206.03324 * 11 10 9 13 13 C 1.54801 * 101.38766 * 214.16232 * 12 11 10 14 14 N 1.46926 * 105.54006 * 24.17838 * 13 12 11 15 15 C 1.46498 * 124.38107 * 163.26980 * 14 13 12 16 16 C 1.53001 * 109.47116 * 89.99488 * 15 14 13 17 17 C 1.50705 * 109.47176 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00061 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99987 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00222 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99985 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46843 * 90.00504 * 21 19 17 23 23 H 1.48496 * 109.47033 * 210.00168 * 21 19 17 24 24 H 1.48496 * 109.47214 * 330.00938 * 21 19 17 25 25 C 1.34894 * 111.24607 * 343.24823 * 14 13 12 26 26 O 1.21278 * 125.22466 * 181.22263 * 25 14 13 27 27 C 1.47704 * 125.60465 * 179.71616 * 8 6 5 28 28 N 1.28855 * 125.75420 * 180.17195 * 2 1 3 29 29 H 1.09006 * 109.46928 * 90.00084 * 1 2 3 30 30 H 1.09005 * 109.47192 * 209.99332 * 1 2 3 31 31 H 1.08994 * 109.47518 * 329.99495 * 1 2 3 32 32 H 1.08002 * 126.19041 * 359.97250 * 3 2 1 33 33 H 1.08993 * 109.86990 * 300.33741 * 9 8 6 34 34 H 1.08998 * 109.86877 * 61.46447 * 9 8 6 35 35 H 1.08997 * 110.74729 * 139.20397 * 10 9 8 36 36 H 1.09002 * 110.75169 * 262.37423 * 10 9 8 37 37 H 1.08999 * 111.04013 * 332.19253 * 12 11 10 38 38 H 1.08998 * 111.04123 * 96.10129 * 12 11 10 39 39 H 1.09005 * 110.22879 * 143.19076 * 13 12 11 40 40 H 1.08994 * 110.23782 * 265.07088 * 13 12 11 41 41 H 1.08996 * 109.47561 * 210.00117 * 15 14 13 42 42 H 1.09009 * 109.46960 * 330.00112 * 15 14 13 43 43 H 1.08996 * 109.47419 * 300.00716 * 16 15 14 44 44 H 1.09009 * 109.46696 * 60.00463 * 16 15 14 45 45 H 0.96994 * 120.00214 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.39240 * 276.23951 * 27 8 6 47 47 H 1.09001 * 110.39144 * 38.62810 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4949 0.6853 0.0065 5 6 3.4750 -0.6600 0.0046 6 6 4.6575 -1.5479 0.0106 7 8 4.5115 -2.7546 0.0086 8 7 5.8972 -1.0190 0.0184 9 6 6.2158 0.4174 0.0223 10 6 7.7561 0.5475 0.0081 11 6 8.2076 -0.8169 -0.5371 12 6 9.6202 -1.1730 -0.0627 13 6 10.1687 -1.9441 -1.2878 14 7 9.3858 -1.4672 -2.4359 15 6 9.7759 -1.6495 -3.8362 16 6 9.1995 -2.9669 -4.3588 17 6 9.6013 -3.1548 -5.7991 18 1 10.2068 -2.4090 -6.2925 19 6 9.1949 -4.2783 -6.4873 20 7 9.5460 -4.4426 -7.7440 21 14 8.1470 -5.5681 -5.6341 22 1 6.7105 -5.2396 -5.8182 23 1 8.4288 -6.9025 -6.2214 24 1 8.4684 -5.5872 -4.1844 25 6 8.2611 -0.8401 -2.0341 26 8 7.4223 -0.3673 -2.7715 27 6 7.1593 -1.7862 0.0310 28 7 2.2178 -1.0457 -0.0031 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.9162 2.1191 -0.0004 33 1 5.7956 0.8925 -0.8641 34 1 5.8128 0.8839 0.9212 35 1 8.0695 1.3521 -0.6571 36 1 8.1393 0.7099 1.0155 37 1 10.2067 -0.2745 0.1289 38 1 9.5872 -1.8118 0.8198 39 1 11.2254 -1.7192 -1.4325 40 1 10.0272 -3.0164 -1.1526 41 1 9.3897 -0.8223 -4.4317 42 1 10.8632 -1.6739 -3.9103 43 1 9.5857 -3.7941 -3.7634 44 1 8.1122 -2.9425 -4.2848 45 1 9.2604 -5.2331 -8.2280 46 1 7.4182 -2.0748 1.0498 47 1 7.0742 -2.6678 -0.6043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268829200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:24 Heat of formation + Delta-G solvation = 13.179230 kcal Electronic energy + Delta-G solvation = -31069.879904 eV Core-core repulsion = 26868.064274 eV Total energy + Delta-G solvation = -4201.815629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.48466 -42.29589 -40.45860 -38.25398 -37.49971 -35.82531 -35.49636 -34.17324 -32.83366 -32.25733 -30.65035 -29.72098 -28.50069 -27.22691 -26.24727 -24.48999 -23.66384 -23.23165 -23.06954 -21.80291 -20.93085 -20.07361 -19.12345 -18.80478 -17.88790 -17.65433 -17.46785 -17.15840 -16.90460 -16.67768 -16.42252 -16.02533 -15.69240 -15.38820 -14.93951 -14.86088 -14.67031 -14.41815 -14.17403 -14.09483 -13.96892 -13.93500 -13.80741 -13.64821 -13.21126 -13.05638 -13.01781 -12.85420 -12.44322 -12.34052 -12.12598 -11.92366 -11.82376 -11.71878 -11.56854 -11.55208 -11.47543 -11.39904 -10.88365 -10.64840 -10.61762 -9.81294 -9.59359 -8.40398 -6.43885 0.21678 1.08187 1.20890 1.22793 1.26498 1.36125 1.50796 1.84357 2.11058 2.16510 2.24236 2.92965 2.94755 3.24126 3.29106 3.36048 3.50707 3.82241 3.88064 3.98864 4.22442 4.28673 4.31106 4.34828 4.36843 4.41203 4.52086 4.55566 4.61418 4.65186 4.74505 4.75890 4.77421 4.85562 4.93805 5.05195 5.10324 5.12645 5.23260 5.25312 5.27493 5.29338 5.44371 5.63874 5.72223 6.14706 6.19013 6.26350 6.62260 6.71388 7.03004 7.17801 7.22474 8.75835 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.003157 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.819862 B = 8866.750330 C =10422.542574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.205 3.795 4 N -0.499 5.499 5 C 0.120 3.880 6 C 0.616 3.384 7 O -0.571 6.571 8 N -0.596 5.596 9 C 0.118 3.882 10 C -0.095 4.095 11 C -0.107 4.107 12 C -0.095 4.095 13 C 0.085 3.915 14 N -0.622 5.622 15 C 0.149 3.851 16 C -0.015 4.015 17 C -0.529 4.529 18 H 0.046 0.954 19 C 0.017 3.983 20 N -0.941 5.941 21 Si 0.938 3.062 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.252 1.252 25 C 0.510 3.490 26 O -0.575 6.575 27 C 0.130 3.870 28 N -0.289 5.289 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.284 0.716 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.027 0.973 44 H -0.014 1.014 45 H 0.269 0.731 46 H 0.128 0.872 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 16.569 28.318 34.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.096 5.096 3 C -0.089 4.089 4 N -0.225 5.225 5 C -0.158 4.158 6 C 0.402 3.598 7 O -0.449 6.449 8 N -0.329 5.329 9 C -0.004 4.004 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.133 4.133 13 C -0.036 4.036 14 N -0.354 5.354 15 C 0.027 3.973 16 C -0.054 4.054 17 C -0.568 4.568 18 H 0.065 0.935 19 C -0.181 4.181 20 N -0.581 5.581 21 Si 0.762 3.238 22 H -0.211 1.211 23 H -0.194 1.194 24 H -0.176 1.176 25 C 0.298 3.702 26 O -0.455 6.455 27 C 0.008 3.992 28 N -0.131 5.131 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.299 0.701 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.045 0.955 44 H 0.005 0.995 45 H 0.078 0.922 46 H 0.146 0.854 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.623 15.542 27.702 33.824 hybrid contribution -1.049 -0.901 -1.213 1.840 sum -12.673 14.640 26.489 32.812 Atomic orbital electron populations 1.22773 0.69044 1.08096 1.06505 1.47831 1.10945 1.02978 1.47805 1.27610 0.84586 0.97631 0.99110 1.71317 1.22577 1.07842 1.20798 1.23244 0.91580 0.90502 1.10511 1.16277 0.81344 0.85355 0.76854 1.90781 1.85964 1.15452 1.52697 1.48233 1.03994 1.10099 1.70537 1.22243 0.96478 0.78750 1.02922 1.22560 0.92688 0.93771 1.04305 1.21625 0.98963 0.99361 0.91158 1.22623 0.89949 1.03166 0.97533 1.22586 0.97333 0.99451 0.84274 1.48825 1.23475 1.55678 1.07404 1.21147 1.00179 0.96786 0.79185 1.19757 0.94755 0.95715 0.95159 1.21273 1.32978 1.06243 0.96300 0.93549 1.25787 0.96826 1.00216 0.95302 1.70011 1.47577 1.29743 1.10759 0.85853 0.78760 0.78988 0.80159 1.21136 1.19389 1.17610 1.21011 0.80588 0.76954 0.91633 1.90677 1.42622 1.49708 1.62448 1.22239 0.80736 0.93429 1.02772 1.74250 1.03152 1.15943 1.19760 0.88013 0.88509 0.83300 0.70101 0.92750 0.88477 0.89597 0.84510 0.85910 0.85092 0.87618 0.91120 0.93146 0.88611 0.95457 0.99518 0.92199 0.85442 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 11.38 127.77 1.45 1.77 16 2 N -0.30 -5.06 3.72 -373.46 -1.39 -6.45 16 3 C 0.21 2.88 12.62 180.30 2.27 5.16 16 4 N -0.50 -12.11 8.86 -193.03 -1.71 -13.82 16 5 C 0.12 3.84 7.80 137.13 1.07 4.91 16 6 C 0.62 22.75 7.86 86.80 0.68 23.43 16 7 O -0.57 -25.28 17.36 -3.86 -0.07 -25.35 16 8 N -0.60 -18.07 3.34 -816.08 -2.72 -20.79 16 9 C 0.12 2.76 5.28 86.80 0.46 3.22 16 10 C -0.10 -1.61 5.79 31.37 0.18 -1.43 16 11 C -0.11 -2.40 0.67 -52.67 -0.04 -2.44 16 12 C -0.10 -1.19 6.27 31.28 0.20 -0.99 16 13 C 0.08 1.77 7.37 86.91 0.64 2.41 16 14 N -0.62 -21.10 2.95 -818.19 -2.41 -23.51 16 15 C 0.15 6.27 5.88 86.38 0.51 6.78 16 16 C -0.02 -0.80 4.37 29.85 0.13 -0.67 16 17 C -0.53 -32.17 9.66 25.60 0.25 -31.92 16 18 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 19 C 0.02 1.04 5.47 84.65 0.46 1.51 16 20 N -0.94 -60.99 13.96 21.45 0.30 -60.69 16 21 Si 0.94 48.75 27.47 68.60 1.88 50.64 16 22 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 23 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.25 -12.42 6.54 99.48 0.65 -11.77 16 25 C 0.51 18.29 6.79 87.36 0.59 18.88 16 26 O -0.58 -26.91 17.27 -3.02 -0.05 -26.96 16 27 C 0.13 3.39 5.90 86.37 0.51 3.90 16 28 N -0.29 -8.53 12.08 -52.44 -0.63 -9.16 16 29 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.28 0.11 8.06 -2.91 -0.02 0.09 16 33 H 0.05 1.61 7.64 -2.39 -0.02 1.60 16 34 H 0.10 1.85 7.74 -2.39 -0.02 1.83 16 35 H 0.09 1.56 8.00 -2.39 -0.02 1.54 16 36 H 0.14 1.02 8.05 -2.39 -0.02 1.00 16 37 H 0.12 0.84 7.96 -2.39 -0.02 0.82 16 38 H 0.13 0.78 7.63 -2.39 -0.02 0.77 16 39 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 2.35 7.96 -2.39 -0.02 2.33 16 42 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 43 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 44 H -0.01 -0.78 7.57 -2.38 -0.02 -0.80 16 45 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 46 H 0.13 2.23 7.75 -2.39 -0.02 2.21 16 47 H 0.05 1.56 7.95 -2.39 -0.02 1.54 16 Total: -1.00 -104.34 389.51 3.49 -100.85 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 0.93 Total: 0.73 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 9.37 Total: 34.53 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -8.57 Total: -134.43 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.12 Total: -52.31 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.88 Total: 50.64 kcal Total: -104.34 3.49 -100.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268829200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.026 kcal (2) G-P(sol) polarization free energy of solvation -104.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds