Wall clock time and date at job start Wed Apr 1 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34591 * 125.75189 * 2 1 4 4 N 1.30871 * 107.62316 * 179.80426 * 3 2 1 5 5 C 1.34544 * 107.27097 * 0.36546 * 4 3 2 6 6 C 1.47869 * 126.04842 * 179.89285 * 5 4 3 7 7 O 1.21559 * 120.00252 * 179.69163 * 6 5 4 8 8 N 1.34777 * 120.00024 * 359.69330 * 6 5 4 9 9 C 1.47656 * 125.81370 * 0.02562 * 8 6 5 10 10 C 1.54971 * 104.85942 * 203.98371 * 9 8 6 11 11 C 1.55329 * 101.66806 * 323.40077 * 10 9 8 12 12 C 1.46230 * 125.81788 * 179.97438 * 8 6 5 13 13 C 1.53901 * 110.87620 * 57.73632 * 12 8 6 14 14 C 1.54637 * 101.59512 * 263.47454 * 13 12 8 15 15 N 1.46847 * 105.50128 * 335.21672 * 14 13 12 16 16 C 1.46499 * 124.36944 * 196.85611 * 15 14 13 17 17 C 1.53004 * 109.47198 * 90.00504 * 16 15 14 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 C 1.34668 * 111.26073 * 17.12381 * 15 14 13 27 27 O 1.21280 * 125.07089 * 178.91559 * 26 15 14 28 28 N 1.28853 * 125.74939 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47171 * 269.98194 * 1 2 3 30 30 H 1.09007 * 109.47055 * 29.97654 * 1 2 3 31 31 H 1.08991 * 109.47305 * 149.97806 * 1 2 3 32 32 H 1.07991 * 126.18185 * 0.04350 * 3 2 1 33 33 H 1.08995 * 110.36217 * 322.83534 * 9 8 6 34 34 H 1.09002 * 110.35750 * 85.13797 * 9 8 6 35 35 H 1.08999 * 110.98857 * 81.49896 * 10 9 8 36 36 H 1.09004 * 110.98676 * 205.27106 * 10 9 8 37 37 H 1.08995 * 110.76409 * 276.58451 * 11 10 9 38 38 H 1.09002 * 110.75831 * 153.20095 * 11 10 9 39 39 H 1.09002 * 111.00281 * 145.39701 * 13 12 8 40 40 H 1.09001 * 111.00440 * 21.55341 * 13 12 8 41 41 H 1.09002 * 110.24387 * 216.21028 * 14 13 12 42 42 H 1.09000 * 110.24374 * 94.22057 * 14 13 12 43 43 H 1.09000 * 109.47602 * 330.00054 * 16 15 14 44 44 H 1.09007 * 109.47337 * 209.99769 * 16 15 14 45 45 H 1.09000 * 109.47211 * 59.99311 * 17 16 15 46 46 H 1.09007 * 109.46376 * 299.99853 * 17 16 15 47 47 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6851 0.0043 5 6 3.4750 -0.6602 -0.0013 6 6 4.6574 -1.5481 -0.0015 7 8 4.5113 -2.7549 -0.0012 8 7 5.8971 -1.0195 -0.0020 9 6 6.2222 0.4208 -0.0019 10 6 7.6444 0.5073 -0.6114 11 6 8.3119 -0.7709 -0.0341 12 6 7.1494 -1.7745 -0.0018 13 6 7.2225 -2.7158 -1.2172 14 6 6.7350 -4.0503 -0.6066 15 7 7.0247 -3.9537 0.8298 16 6 7.0625 -5.0974 1.7445 17 6 8.4819 -5.6667 1.7910 18 6 8.5206 -6.8435 2.7315 19 1 7.6227 -7.1541 3.2451 20 6 9.7036 -7.5199 2.9410 21 7 10.7971 -7.1415 2.3158 22 14 9.7534 -8.9738 4.1128 23 1 9.4602 -10.2227 3.3647 24 1 11.1024 -9.0694 4.7261 25 1 8.7370 -8.7853 5.1789 26 6 7.2455 -2.6775 1.1987 27 8 7.4882 -2.3109 2.3290 28 7 2.2178 -1.0457 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5141 32 1 1.9164 2.1190 0.0007 33 1 5.5111 0.9702 -0.6187 34 1 6.2217 0.8096 1.0165 35 1 7.6055 0.4698 -1.7001 36 1 8.1607 1.4053 -0.2720 37 1 8.6920 -0.5881 0.9709 38 1 9.1075 -1.1217 -0.6914 39 1 8.2459 -2.8040 -1.5820 40 1 6.5540 -2.3819 -2.0107 41 1 7.2787 -4.8868 -1.0455 42 1 5.6636 -4.1697 -0.7679 43 1 6.3739 -5.8662 1.3938 44 1 6.7680 -4.7740 2.7430 45 1 9.1704 -4.8979 2.1417 46 1 8.7763 -5.9901 0.7925 47 1 11.6294 -7.6171 2.4635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268831341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:52 Heat of formation + Delta-G solvation = 50.610706 kcal Electronic energy + Delta-G solvation = -31590.018908 eV Core-core repulsion = 27389.826429 eV Total energy + Delta-G solvation = -4200.192479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.74628 -41.20057 -38.58262 -37.13595 -35.76256 -34.95335 -33.49821 -32.09083 -32.00111 -31.55264 -29.04197 -28.23764 -27.64682 -25.19513 -24.72343 -23.55319 -22.76341 -22.26668 -21.57349 -20.84977 -19.73435 -18.69170 -17.71708 -17.13347 -16.78281 -16.43835 -16.37675 -15.72017 -15.57040 -15.31983 -14.79058 -14.55505 -14.29393 -14.20606 -13.75417 -13.65761 -13.46820 -13.30130 -13.03377 -12.83469 -12.52963 -12.39271 -12.28553 -12.20994 -11.94044 -11.48543 -11.31439 -11.24736 -11.02878 -10.87138 -10.76735 -10.64592 -10.56126 -10.46874 -10.13792 -9.89255 -9.86914 -9.71800 -9.52419 -9.11559 -8.46516 -8.28843 -7.74935 -5.94419 -3.97004 1.14335 1.78782 1.82117 2.50301 3.22191 3.33761 3.37243 3.42803 3.47588 3.69661 3.83242 3.98061 4.23971 4.47683 4.49488 4.50917 4.53603 4.61580 4.68574 4.80675 4.95107 5.01854 5.18045 5.35152 5.41613 5.45136 5.60115 5.75619 5.76309 5.80950 5.85933 5.94404 5.97819 6.03665 6.11987 6.17143 6.24421 6.35273 6.39289 6.68086 6.95232 7.18525 7.32166 7.65808 7.66231 7.78253 8.01258 8.06898 8.09951 8.43820 8.82640 9.09764 9.66333 11.17138 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.002775 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.667348 B =10086.985959 C =11174.732796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.306 5.306 3 C 0.188 3.812 4 N -0.482 5.482 5 C 0.154 3.846 6 C 0.624 3.376 7 O -0.498 6.498 8 N -0.578 5.578 9 C 0.103 3.897 10 C -0.131 4.131 11 C -0.114 4.114 12 C 0.135 3.865 13 C -0.135 4.135 14 C 0.099 3.901 15 N -0.590 5.590 16 C 0.130 3.870 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.513 3.487 27 O -0.531 6.531 28 N -0.250 5.250 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.226 0.774 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 22.961 -12.327 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.101 5.101 3 C -0.107 4.107 4 N -0.208 5.208 5 C -0.126 4.126 6 C 0.408 3.592 7 O -0.369 6.369 8 N -0.314 5.314 9 C -0.019 4.019 10 C -0.169 4.169 11 C -0.153 4.153 12 C 0.047 3.953 13 C -0.173 4.173 14 C -0.025 4.025 15 N -0.322 5.322 16 C 0.010 3.990 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.297 3.703 27 O -0.408 6.408 28 N -0.089 5.089 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.243 0.757 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.519 21.818 -11.674 30.907 hybrid contribution -0.283 -0.528 0.680 0.907 sum -18.802 21.289 -10.993 30.457 Atomic orbital electron populations 1.22262 0.72167 1.05989 1.05116 1.47408 1.09381 1.03860 1.49461 1.26558 0.85994 0.95994 1.02183 1.71355 1.19961 1.09424 1.20018 1.23535 0.91872 0.89308 1.07861 1.15872 0.79901 0.85750 0.77666 1.90838 1.84559 1.12914 1.48599 1.47805 1.03020 1.08338 1.72190 1.22658 0.96713 0.80311 1.02196 1.22857 0.95023 0.98241 1.00782 1.22588 0.95323 0.93575 1.03779 1.21189 0.85085 0.93117 0.95946 1.22947 1.03096 0.94850 0.96430 1.22270 1.02213 0.97166 0.80818 1.48399 1.66884 1.07359 1.09512 1.21765 1.01008 0.84803 0.91395 1.19410 0.90066 0.95699 0.97317 1.21111 0.95289 1.13488 1.25899 0.92507 1.24993 0.95613 0.97575 0.96125 1.69976 0.99850 1.40763 1.42709 0.86555 0.77311 0.82713 0.81194 1.20656 1.21218 1.19821 1.20372 0.77215 0.83602 0.89089 1.90667 1.49619 1.78558 1.21913 1.74381 1.02738 1.13146 1.18638 0.89058 0.87939 0.88102 0.75744 0.88042 0.90988 0.90442 0.89414 0.89025 0.89017 0.88982 0.89505 0.90763 0.89099 0.91615 0.91458 0.96128 0.96409 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.38 59.84 0.68 0.89 16 2 N -0.31 -2.44 3.72 -69.40 -0.26 -2.70 16 3 C 0.19 1.30 12.62 -90.47 -1.14 0.15 16 4 N -0.48 -5.29 8.49 -12.37 -0.11 -5.39 16 5 C 0.15 2.18 7.80 -156.36 -1.22 0.96 16 6 C 0.62 10.32 7.46 -12.32 -0.09 10.23 16 7 O -0.50 -9.60 13.09 5.31 0.07 -9.53 16 8 N -0.58 -8.59 2.85 -158.47 -0.45 -9.04 16 9 C 0.10 1.17 6.15 -2.37 -0.01 1.15 16 10 C -0.13 -1.20 7.09 -24.46 -0.17 -1.37 16 11 C -0.11 -1.44 6.06 -25.18 -0.15 -1.60 16 12 C 0.14 2.13 0.85 -132.42 -0.11 2.02 16 13 C -0.13 -1.89 6.00 -25.40 -0.15 -2.04 16 14 C 0.10 1.71 6.39 -2.99 -0.02 1.69 16 15 N -0.59 -12.67 2.74 -172.49 -0.47 -13.14 16 16 C 0.13 3.15 5.89 -4.04 -0.02 3.13 16 17 C 0.01 0.36 5.30 -27.88 -0.15 0.22 16 18 C -0.52 -15.50 9.11 -34.44 -0.31 -15.82 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 22 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.51 10.97 6.45 -11.12 -0.07 10.90 16 27 O -0.53 -13.28 17.07 5.56 0.09 -13.19 16 28 N -0.25 -3.30 12.08 32.07 0.39 -2.91 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 -0.12 8.14 -51.92 -0.42 -0.54 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.23 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.10 1.03 6.19 -51.93 -0.32 0.71 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.33 7.52 -51.93 -0.39 0.94 16 38 H 0.09 1.00 7.39 -51.93 -0.38 0.62 16 39 H 0.09 1.13 7.45 -51.93 -0.39 0.74 16 40 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.63 5.78 -51.93 -0.30 1.33 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 45 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -41.35 384.04 -9.09 -50.43 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.80 Total: -2.90 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -3.05 Total: 12.17 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.16 Total: -60.31 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.16 Total: -22.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.35 -9.09 -50.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268831341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.045 kcal (2) G-P(sol) polarization free energy of solvation -41.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds