Wall clock time and date at job start Wed Apr 1 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34591 * 125.75189 * 2 1 4 4 N 1.30871 * 107.62316 * 179.80426 * 3 2 1 5 5 C 1.34544 * 107.27097 * 0.36546 * 4 3 2 6 6 C 1.47869 * 126.04842 * 179.89285 * 5 4 3 7 7 O 1.21559 * 120.00252 * 179.69163 * 6 5 4 8 8 N 1.34777 * 120.00024 * 359.69330 * 6 5 4 9 9 C 1.47656 * 125.81370 * 0.02562 * 8 6 5 10 10 C 1.54971 * 104.85942 * 203.98371 * 9 8 6 11 11 C 1.55329 * 101.66806 * 323.40077 * 10 9 8 12 12 C 1.46230 * 125.81788 * 179.97438 * 8 6 5 13 13 C 1.53901 * 110.87620 * 57.73632 * 12 8 6 14 14 C 1.54637 * 101.59512 * 263.47454 * 13 12 8 15 15 N 1.46847 * 105.50128 * 335.21672 * 14 13 12 16 16 C 1.46499 * 124.36944 * 196.85611 * 15 14 13 17 17 C 1.53004 * 109.47198 * 90.00504 * 16 15 14 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 C 1.34668 * 111.26073 * 17.12381 * 15 14 13 27 27 O 1.21280 * 125.07089 * 178.91559 * 26 15 14 28 28 N 1.28853 * 125.74939 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47171 * 269.98194 * 1 2 3 30 30 H 1.09007 * 109.47055 * 29.97654 * 1 2 3 31 31 H 1.08991 * 109.47305 * 149.97806 * 1 2 3 32 32 H 1.07991 * 126.18185 * 0.04350 * 3 2 1 33 33 H 1.08995 * 110.36217 * 322.83534 * 9 8 6 34 34 H 1.09002 * 110.35750 * 85.13797 * 9 8 6 35 35 H 1.08999 * 110.98857 * 81.49896 * 10 9 8 36 36 H 1.09004 * 110.98676 * 205.27106 * 10 9 8 37 37 H 1.08995 * 110.76409 * 276.58451 * 11 10 9 38 38 H 1.09002 * 110.75831 * 153.20095 * 11 10 9 39 39 H 1.09002 * 111.00281 * 145.39701 * 13 12 8 40 40 H 1.09001 * 111.00440 * 21.55341 * 13 12 8 41 41 H 1.09002 * 110.24387 * 216.21028 * 14 13 12 42 42 H 1.09000 * 110.24374 * 94.22057 * 14 13 12 43 43 H 1.09000 * 109.47602 * 330.00054 * 16 15 14 44 44 H 1.09007 * 109.47337 * 209.99769 * 16 15 14 45 45 H 1.09000 * 109.47211 * 59.99311 * 17 16 15 46 46 H 1.09007 * 109.46376 * 299.99853 * 17 16 15 47 47 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6851 0.0043 5 6 3.4750 -0.6602 -0.0013 6 6 4.6574 -1.5481 -0.0015 7 8 4.5113 -2.7549 -0.0012 8 7 5.8971 -1.0195 -0.0020 9 6 6.2222 0.4208 -0.0019 10 6 7.6444 0.5073 -0.6114 11 6 8.3119 -0.7709 -0.0341 12 6 7.1494 -1.7745 -0.0018 13 6 7.2225 -2.7158 -1.2172 14 6 6.7350 -4.0503 -0.6066 15 7 7.0247 -3.9537 0.8298 16 6 7.0625 -5.0974 1.7445 17 6 8.4819 -5.6667 1.7910 18 6 8.5206 -6.8435 2.7315 19 1 7.6227 -7.1541 3.2451 20 6 9.7036 -7.5199 2.9410 21 7 10.7971 -7.1415 2.3158 22 14 9.7534 -8.9738 4.1128 23 1 9.4602 -10.2227 3.3647 24 1 11.1024 -9.0694 4.7261 25 1 8.7370 -8.7853 5.1789 26 6 7.2455 -2.6775 1.1987 27 8 7.4882 -2.3109 2.3290 28 7 2.2178 -1.0457 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5141 32 1 1.9164 2.1190 0.0007 33 1 5.5111 0.9702 -0.6187 34 1 6.2217 0.8096 1.0165 35 1 7.6055 0.4698 -1.7001 36 1 8.1607 1.4053 -0.2720 37 1 8.6920 -0.5881 0.9709 38 1 9.1075 -1.1217 -0.6914 39 1 8.2459 -2.8040 -1.5820 40 1 6.5540 -2.3819 -2.0107 41 1 7.2787 -4.8868 -1.0455 42 1 5.6636 -4.1697 -0.7679 43 1 6.3739 -5.8662 1.3938 44 1 6.7680 -4.7740 2.7430 45 1 9.1704 -4.8979 2.1417 46 1 8.7763 -5.9901 0.7925 47 1 11.6294 -7.6171 2.4635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268831341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:51 Heat of formation + Delta-G solvation = 21.769501 kcal Electronic energy + Delta-G solvation = -31591.269556 eV Core-core repulsion = 27389.826429 eV Total energy + Delta-G solvation = -4201.443127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.46452 -42.52385 -40.00141 -38.36845 -37.49575 -35.76259 -35.43409 -33.63102 -32.82727 -32.77085 -30.81416 -29.12540 -28.65749 -27.03331 -25.89883 -24.74927 -23.61897 -23.51035 -23.08537 -21.85659 -21.20003 -20.02894 -18.74294 -18.70599 -17.85891 -17.73994 -17.40381 -17.13479 -16.84932 -16.68289 -16.37255 -15.96683 -15.62698 -15.47079 -14.91521 -14.61594 -14.53470 -14.45040 -14.29603 -13.99160 -13.96773 -13.88172 -13.65436 -13.39860 -13.13618 -12.89917 -12.88045 -12.63180 -12.51117 -12.39259 -12.09032 -12.04036 -11.89085 -11.60714 -11.47203 -11.44972 -11.35318 -11.26204 -11.03055 -10.62378 -10.60205 -9.76434 -9.54540 -8.26092 -6.39258 0.24858 0.99609 1.12343 1.36175 1.39362 1.49146 1.50909 1.94561 2.12691 2.18987 2.39589 2.94369 3.06513 3.19626 3.30940 3.45722 3.58493 3.76844 3.86630 4.02184 4.16874 4.21414 4.24111 4.33655 4.39968 4.50718 4.55664 4.61590 4.68928 4.73513 4.76809 4.79144 4.85348 4.91969 4.94535 5.06588 5.12705 5.22749 5.26278 5.32630 5.35749 5.41288 5.54956 5.68800 5.77077 6.11571 6.20479 6.25434 6.73723 6.77061 7.06817 7.11701 7.29857 8.86268 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.002775 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.667348 B =10086.985959 C =11174.732796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.208 3.792 4 N -0.500 5.500 5 C 0.125 3.875 6 C 0.613 3.387 7 O -0.541 6.541 8 N -0.578 5.578 9 C 0.101 3.899 10 C -0.111 4.111 11 C -0.116 4.116 12 C 0.138 3.862 13 C -0.120 4.120 14 C 0.093 3.907 15 N -0.601 5.601 16 C 0.144 3.856 17 C 0.031 3.969 18 C -0.549 4.549 19 H 0.061 0.939 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.267 1.267 26 C 0.496 3.504 27 O -0.582 6.582 28 N -0.286 5.286 29 H 0.102 0.898 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.284 0.716 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.043 0.957 45 H -0.021 1.021 46 H 0.004 0.996 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 25.087 -13.946 35.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.096 5.096 3 C -0.086 4.086 4 N -0.226 5.226 5 C -0.154 4.154 6 C 0.399 3.601 7 O -0.416 6.416 8 N -0.312 5.312 9 C -0.020 4.020 10 C -0.149 4.149 11 C -0.155 4.155 12 C 0.049 3.951 13 C -0.158 4.158 14 C -0.029 4.029 15 N -0.331 5.331 16 C 0.022 3.978 17 C -0.007 4.007 18 C -0.588 4.588 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.192 1.192 26 C 0.282 3.718 27 O -0.463 6.463 28 N -0.128 5.128 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.113 0.887 32 H 0.300 0.700 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.062 0.938 45 H -0.003 1.003 46 H 0.023 0.977 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.921 23.990 -13.338 33.916 hybrid contribution -0.005 -1.110 1.224 1.653 sum -19.925 22.880 -12.114 32.669 Atomic orbital electron populations 1.22763 0.69120 1.08016 1.06511 1.47819 1.10911 1.03013 1.47810 1.27626 0.84563 0.97613 0.98833 1.71263 1.22459 1.07741 1.21178 1.23098 0.91348 0.90372 1.10574 1.16383 0.81029 0.85798 0.76886 1.90789 1.85428 1.14760 1.50643 1.47987 1.02262 1.09650 1.71311 1.22865 0.98679 0.78304 1.02124 1.22899 0.92770 0.97182 1.02056 1.22661 0.94812 0.94702 1.03277 1.21228 0.87072 0.93420 0.93357 1.22999 1.04921 0.91897 0.95967 1.22470 1.02196 0.99638 0.78553 1.48541 1.66668 1.06869 1.11008 1.21322 0.98811 0.86219 0.91404 1.19159 0.91236 0.94319 0.96015 1.21494 0.96013 1.14434 1.26823 0.92113 1.26007 0.94909 1.00780 0.97838 1.70103 1.00586 1.42203 1.43950 0.85343 0.77669 0.78711 0.78679 1.18973 1.20350 1.19153 1.21541 0.75676 0.84355 0.90227 1.90608 1.51650 1.79493 1.24521 1.74277 1.03075 1.15890 1.19565 0.87917 0.83363 0.88699 0.70049 0.86312 0.92310 0.87729 0.86791 0.91615 0.86802 0.86589 0.87069 0.90290 0.89637 0.90311 0.93825 1.00298 0.97719 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.38 127.77 1.45 1.60 16 2 N -0.30 -4.15 3.72 -373.47 -1.39 -5.54 16 3 C 0.21 2.18 12.62 180.30 2.27 4.46 16 4 N -0.50 -10.13 8.49 -193.04 -1.64 -11.77 16 5 C 0.12 3.54 7.80 137.13 1.07 4.61 16 6 C 0.61 20.95 7.46 86.79 0.65 21.60 16 7 O -0.54 -22.03 13.09 -3.90 -0.05 -22.09 16 8 N -0.58 -17.23 2.85 -773.55 -2.20 -19.44 16 9 C 0.10 2.15 6.15 86.83 0.53 2.69 16 10 C -0.11 -1.72 7.09 32.07 0.23 -1.49 16 11 C -0.12 -2.83 6.06 31.60 0.19 -2.64 16 12 C 0.14 4.40 0.85 3.36 0.00 4.40 16 13 C -0.12 -3.25 6.00 31.46 0.19 -3.06 16 14 C 0.09 3.34 6.39 86.87 0.55 3.90 16 15 N -0.60 -27.35 2.74 -818.10 -2.24 -29.59 16 16 C 0.14 7.45 5.89 86.38 0.51 7.96 16 17 C 0.03 1.82 5.30 29.85 0.16 1.98 16 18 C -0.55 -34.00 9.11 25.60 0.23 -33.77 16 19 H 0.06 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.00 0.19 5.46 84.65 0.46 0.65 16 21 N -0.93 -59.22 13.29 21.45 0.28 -58.94 16 22 Si 0.97 46.78 29.54 68.60 2.03 48.80 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 C 0.50 22.48 6.45 87.62 0.57 23.05 16 27 O -0.58 -31.43 17.07 -3.03 -0.05 -31.49 16 28 N -0.29 -7.54 12.08 -52.44 -0.63 -8.18 16 29 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.15 -1.05 8.14 -2.38 -0.02 -1.07 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.28 -0.88 8.06 -2.91 -0.02 -0.91 16 33 H 0.12 2.15 6.19 -2.39 -0.01 2.13 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.07 1.96 7.52 -2.39 -0.02 1.94 16 38 H 0.11 2.24 7.39 -2.39 -0.02 2.22 16 39 H 0.12 2.59 7.45 -2.39 -0.02 2.57 16 40 H 0.11 2.52 8.07 -2.39 -0.02 2.50 16 41 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.09 3.20 5.78 -2.39 -0.01 3.18 16 43 H 0.08 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.04 2.41 7.92 -2.38 -0.02 2.39 16 45 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 46 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -98.94 384.04 4.16 -94.78 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.99 Total: 7.51 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: 9.07 Total: 35.93 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -7.82 Total: -133.46 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.10 Total: -53.57 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -98.94 4.16 -94.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268831341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.553 kcal (2) G-P(sol) polarization free energy of solvation -98.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds