Wall clock time and date at job start Wed Apr 1 2020 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47286 * 2 1 4 4 C 1.34775 * 119.99960 * 273.43898 * 3 2 1 5 5 O 1.21514 * 120.00025 * 185.48168 * 4 3 2 6 6 C 1.48156 * 120.00403 * 5.48501 * 4 3 2 7 7 C 1.39711 * 120.18629 * 186.06822 * 6 4 3 8 8 C 1.38821 * 117.90088 * 179.80771 * 7 6 4 9 9 C 1.38569 * 118.06749 * 0.44003 * 8 7 6 10 10 N 1.32174 * 120.06638 * 359.79506 * 9 8 7 11 11 N 1.28350 * 122.30433 * 359.97438 * 10 9 8 12 12 C 1.46502 * 119.99877 * 93.43453 * 3 2 1 13 13 H 1.08996 * 110.27091 * 357.91623 * 12 3 2 14 14 C 1.54596 * 110.31045 * 235.71710 * 12 3 2 15 15 C 1.54934 * 102.92213 * 219.12833 * 14 12 3 16 16 N 1.48537 * 103.22720 * 37.41200 * 15 14 12 17 17 C 1.46893 * 111.00229 * 200.27847 * 16 15 14 18 18 C 1.50706 * 109.47127 * 307.40276 * 17 16 15 19 19 O 1.21292 * 120.00120 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99661 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99585 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99930 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99732 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00173 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47140 * 59.99690 * 25 23 21 27 27 H 1.48503 * 109.47139 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47062 * 299.99876 * 25 23 21 29 29 C 1.47901 * 105.82285 * 320.79608 * 16 15 14 30 30 H 1.08998 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46927 * 300.00228 * 1 2 3 32 32 H 1.09003 * 109.47205 * 59.99759 * 1 2 3 33 33 H 1.08999 * 109.46662 * 240.00248 * 2 1 3 34 34 H 1.08994 * 109.47083 * 120.00027 * 2 1 3 35 35 H 1.08001 * 121.05089 * 0.02562 * 7 6 4 36 36 H 1.08000 * 120.96709 * 180.19636 * 8 7 6 37 37 H 1.08001 * 119.96641 * 179.77160 * 9 8 7 38 38 H 1.09000 * 110.72052 * 337.48908 * 14 12 3 39 39 H 1.09001 * 110.72177 * 100.76658 * 14 12 3 40 40 H 1.08999 * 110.66858 * 278.98062 * 15 14 12 41 41 H 1.08996 * 110.81342 * 155.91788 * 15 14 12 42 42 H 1.09000 * 109.47225 * 67.39633 * 17 16 15 43 43 H 1.09002 * 109.47552 * 187.40069 * 17 16 15 44 44 H 0.97003 * 120.00625 * 359.97438 * 20 18 17 45 45 H 0.96998 * 119.99786 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.91483 * 265.97799 * 29 16 15 47 47 H 1.08998 * 110.08540 * 144.77163 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1770 2.0399 -1.1651 5 8 2.6752 3.1482 -1.1735 6 6 1.7440 1.4127 -2.4356 7 6 2.0203 2.0345 -3.6558 8 6 1.5964 1.4032 -4.8173 9 6 0.9178 0.2012 -4.6955 10 7 0.6942 -0.3148 -3.4994 11 7 1.0863 0.2593 -2.4205 12 6 2.3343 2.0465 1.2665 13 1 2.1145 1.3858 2.1051 14 6 1.5353 3.3637 1.3946 15 6 2.5598 4.3289 2.0420 16 7 3.8423 3.9447 1.3985 17 6 4.9886 4.3939 2.1997 18 6 4.8514 5.8660 2.4918 19 8 3.8932 6.4806 2.0732 20 7 5.7940 6.4997 3.2172 21 6 5.6695 7.8391 3.4824 22 1 4.8162 8.3863 3.1097 23 6 6.6410 8.4924 4.2308 24 7 7.6790 7.8264 4.6848 25 14 6.4717 10.3174 4.5916 26 1 5.2155 10.5584 5.3459 27 1 7.6302 10.7713 5.4023 28 1 6.4346 11.0732 3.3139 29 6 3.8147 2.4697 1.2931 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5501 2.9748 -3.6946 36 1 1.7864 1.8383 -5.7873 37 1 0.5709 -0.3143 -5.5789 38 1 1.2302 3.7267 0.4131 39 1 0.6697 3.2283 2.0430 40 1 2.6081 4.1723 3.1196 41 1 2.3114 5.3658 1.8161 42 1 5.0165 3.8386 3.1373 43 1 5.9106 4.2178 1.6456 44 1 6.5606 6.0083 3.5517 45 1 8.3573 8.2826 5.2068 46 1 4.3121 2.0265 2.1558 47 1 4.3086 2.1508 0.3753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269348331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:48 Heat of formation + Delta-G solvation = 37.500278 kcal Electronic energy + Delta-G solvation = -30834.226731 eV Core-core repulsion = 26633.465742 eV Total energy + Delta-G solvation = -4200.760989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65190 -40.19031 -38.59621 -37.14462 -35.95083 -33.89420 -33.53264 -33.05461 -31.62260 -31.11636 -30.01200 -28.20937 -26.68864 -25.47725 -24.95854 -24.10493 -23.49295 -21.69653 -21.02891 -19.75632 -19.15210 -17.90772 -17.78387 -17.53507 -17.17534 -16.20993 -15.90010 -15.76539 -15.45016 -14.82228 -14.71532 -14.59763 -14.39799 -14.24648 -13.96001 -13.77262 -13.66823 -13.37550 -13.17254 -12.71686 -12.31024 -12.26692 -11.98724 -11.68985 -11.58988 -11.49117 -11.47434 -11.33546 -11.23228 -11.01127 -10.82906 -10.60296 -10.53847 -10.38057 -10.26662 -10.17022 -10.07490 -9.77839 -9.42723 -8.75726 -8.21344 -7.92677 -7.70863 -6.37125 -3.77604 0.10669 0.34760 2.48272 2.66637 3.23221 3.28313 3.32810 3.33258 3.52867 3.96796 3.99335 4.11893 4.16003 4.29989 4.38930 4.50714 4.65361 4.73980 4.86244 4.92113 5.10676 5.18943 5.28521 5.29803 5.31399 5.38266 5.47526 5.51295 5.58595 5.63203 5.73885 5.80079 5.88345 5.89828 6.00181 6.04010 6.11529 6.21628 6.33550 6.39996 6.64307 6.83487 7.20378 7.43482 7.48598 7.59700 7.96514 8.11542 8.17662 8.67683 9.23076 9.59681 10.12309 10.80712 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.002184 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.089922 B =12819.572334 C =13428.281822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.560 3.440 5 O -0.479 6.479 6 C 0.025 3.975 7 C -0.064 4.064 8 C -0.123 4.123 9 C 0.053 3.947 10 N -0.251 5.251 11 N -0.202 5.202 12 C 0.139 3.861 13 H 0.096 0.904 14 C -0.133 4.133 15 C 0.045 3.955 16 N -0.476 5.476 17 C 0.035 3.965 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.033 3.967 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.118 0.882 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 -20.234 -14.445 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 N -0.323 5.323 4 C 0.343 3.657 5 O -0.350 6.350 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.152 4.152 9 C -0.110 4.110 10 N -0.094 5.094 11 N -0.050 5.050 12 C 0.036 3.964 13 H 0.114 0.886 14 C -0.172 4.172 15 C -0.083 4.083 16 N -0.200 5.200 17 C -0.096 4.096 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.096 4.096 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.136 0.864 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.619 -20.100 -14.203 27.658 hybrid contribution 1.092 1.192 0.296 1.643 sum -11.527 -18.908 -13.908 26.149 Atomic orbital electron populations 1.22067 0.95496 1.02048 1.01566 1.21882 0.95210 0.81275 1.03115 1.47948 1.64717 1.14439 1.05216 1.17657 0.80099 0.85582 0.82339 1.91025 1.40580 1.17870 1.85543 1.23079 0.98357 0.94635 0.95982 1.22507 0.94956 1.00606 0.91247 1.22477 0.96713 0.95693 1.00362 1.24467 0.94235 0.93911 0.98389 1.73174 1.14207 1.26333 0.95683 1.73747 1.05327 1.05858 1.20030 1.22063 0.95296 0.94678 0.84377 0.88620 1.22923 0.97736 0.94053 1.02463 1.23387 0.87920 1.02134 0.94841 1.64586 1.01553 1.07585 1.46303 1.22124 0.95672 0.95724 0.96112 1.19730 0.85286 0.88282 0.83657 1.90441 1.32530 1.67588 1.55644 1.41849 1.21658 1.09857 1.46725 1.19650 1.08101 0.84351 1.30586 0.87985 1.25256 0.95335 1.00438 0.96993 1.69608 1.11038 1.37122 1.36689 0.85921 0.77596 0.82178 0.78531 1.19964 1.21030 1.19906 1.23192 0.95134 0.90099 1.01167 0.91759 0.93359 0.92014 0.88476 0.91033 0.81825 0.82527 0.80763 0.89806 0.91472 0.94941 0.86382 0.93650 0.89432 0.77495 0.91889 0.93905 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.55 37.16 0.35 -0.99 16 2 C 0.11 0.98 5.66 -4.04 -0.02 0.96 16 3 N -0.59 -6.85 2.45 -165.55 -0.41 -7.26 16 4 C 0.56 7.43 6.50 -12.19 -0.08 7.36 16 5 O -0.48 -8.05 13.29 5.35 0.07 -7.98 16 6 C 0.02 0.27 6.61 -82.83 -0.55 -0.27 16 7 C -0.06 -0.56 9.73 -38.82 -0.38 -0.94 16 8 C -0.12 -0.72 10.20 -39.24 -0.40 -1.12 16 9 C 0.05 0.33 11.31 -17.28 -0.20 0.13 16 10 N -0.25 -2.35 11.51 30.58 0.35 -2.00 16 11 N -0.20 -2.10 5.26 33.32 0.18 -1.92 16 12 C 0.14 1.74 3.46 -66.57 -0.23 1.51 16 13 H 0.10 0.96 7.82 -51.93 -0.41 0.55 16 14 C -0.13 -1.93 6.26 -24.87 -0.16 -2.09 16 15 C 0.04 0.81 5.31 -1.90 -0.01 0.80 16 16 N -0.48 -8.82 4.88 -231.89 -1.13 -9.95 16 17 C 0.04 0.68 5.52 -4.98 -0.03 0.66 16 18 C 0.44 10.90 7.49 -10.98 -0.08 10.82 16 19 O -0.58 -15.89 13.09 5.55 0.07 -15.81 16 20 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.03 0.49 5.51 -2.75 -0.02 0.47 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 33 H 0.10 0.93 5.63 -51.93 -0.29 0.63 16 34 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 35 H 0.16 1.41 7.73 -52.49 -0.41 1.00 16 36 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 38 H 0.08 1.38 6.21 -51.93 -0.32 1.06 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 41 H 0.12 2.59 5.96 -51.93 -0.31 2.28 16 42 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.04 0.56 7.57 -51.93 -0.39 0.17 16 47 H 0.08 1.20 7.13 -51.93 -0.37 0.83 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -34.40 378.10 -7.98 -42.39 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.43 Total: 10.29 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.03 Total: 9.18 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.34 Total: -60.18 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.14 Total: -23.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.40 -7.98 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269348331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.889 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds