Wall clock time and date at job start Wed Apr 1 2020 04:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47286 * 2 1 4 4 C 1.34775 * 119.99960 * 273.43898 * 3 2 1 5 5 O 1.21514 * 120.00025 * 185.48168 * 4 3 2 6 6 C 1.48156 * 120.00403 * 5.48501 * 4 3 2 7 7 C 1.39711 * 120.18629 * 186.06822 * 6 4 3 8 8 C 1.38821 * 117.90088 * 179.80771 * 7 6 4 9 9 C 1.38569 * 118.06749 * 0.44003 * 8 7 6 10 10 N 1.32174 * 120.06638 * 359.79506 * 9 8 7 11 11 N 1.28350 * 122.30433 * 359.97438 * 10 9 8 12 12 C 1.46502 * 119.99877 * 93.43453 * 3 2 1 13 13 H 1.08996 * 110.27091 * 357.91623 * 12 3 2 14 14 C 1.54596 * 110.31045 * 235.71710 * 12 3 2 15 15 C 1.54934 * 102.92213 * 219.12833 * 14 12 3 16 16 N 1.48537 * 103.22720 * 37.41200 * 15 14 12 17 17 C 1.46893 * 111.00229 * 200.27847 * 16 15 14 18 18 C 1.50706 * 109.47127 * 307.40276 * 17 16 15 19 19 O 1.21292 * 120.00120 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99661 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99585 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99930 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99732 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00173 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47140 * 59.99690 * 25 23 21 27 27 H 1.48503 * 109.47139 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47062 * 299.99876 * 25 23 21 29 29 C 1.47901 * 105.82285 * 320.79608 * 16 15 14 30 30 H 1.08998 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46927 * 300.00228 * 1 2 3 32 32 H 1.09003 * 109.47205 * 59.99759 * 1 2 3 33 33 H 1.08999 * 109.46662 * 240.00248 * 2 1 3 34 34 H 1.08994 * 109.47083 * 120.00027 * 2 1 3 35 35 H 1.08001 * 121.05089 * 0.02562 * 7 6 4 36 36 H 1.08000 * 120.96709 * 180.19636 * 8 7 6 37 37 H 1.08001 * 119.96641 * 179.77160 * 9 8 7 38 38 H 1.09000 * 110.72052 * 337.48908 * 14 12 3 39 39 H 1.09001 * 110.72177 * 100.76658 * 14 12 3 40 40 H 1.08999 * 110.66858 * 278.98062 * 15 14 12 41 41 H 1.08996 * 110.81342 * 155.91788 * 15 14 12 42 42 H 1.09000 * 109.47225 * 67.39633 * 17 16 15 43 43 H 1.09002 * 109.47552 * 187.40069 * 17 16 15 44 44 H 0.97003 * 120.00625 * 359.97438 * 20 18 17 45 45 H 0.96998 * 119.99786 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.91483 * 265.97799 * 29 16 15 47 47 H 1.08998 * 110.08540 * 144.77163 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1770 2.0399 -1.1651 5 8 2.6752 3.1482 -1.1735 6 6 1.7440 1.4127 -2.4356 7 6 2.0203 2.0345 -3.6558 8 6 1.5964 1.4032 -4.8173 9 6 0.9178 0.2012 -4.6955 10 7 0.6942 -0.3148 -3.4994 11 7 1.0863 0.2593 -2.4205 12 6 2.3343 2.0465 1.2665 13 1 2.1145 1.3858 2.1051 14 6 1.5353 3.3637 1.3946 15 6 2.5598 4.3289 2.0420 16 7 3.8423 3.9447 1.3985 17 6 4.9886 4.3939 2.1997 18 6 4.8514 5.8660 2.4918 19 8 3.8932 6.4806 2.0732 20 7 5.7940 6.4997 3.2172 21 6 5.6695 7.8391 3.4824 22 1 4.8162 8.3863 3.1097 23 6 6.6410 8.4924 4.2308 24 7 7.6790 7.8264 4.6848 25 14 6.4717 10.3174 4.5916 26 1 5.2155 10.5584 5.3459 27 1 7.6302 10.7713 5.4023 28 1 6.4346 11.0732 3.3139 29 6 3.8147 2.4697 1.2931 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5501 2.9748 -3.6946 36 1 1.7864 1.8383 -5.7873 37 1 0.5709 -0.3143 -5.5789 38 1 1.2302 3.7267 0.4131 39 1 0.6697 3.2283 2.0430 40 1 2.6081 4.1723 3.1196 41 1 2.3114 5.3658 1.8161 42 1 5.0165 3.8386 3.1373 43 1 5.9106 4.2178 1.6456 44 1 6.5606 6.0083 3.5517 45 1 8.3573 8.2826 5.2068 46 1 4.3121 2.0265 2.1558 47 1 4.3086 2.1508 0.3753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269348331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:47 Heat of formation + Delta-G solvation = 11.822824 kcal Electronic energy + Delta-G solvation = -30835.340189 eV Core-core repulsion = 26633.465742 eV Total energy + Delta-G solvation = -4201.874447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38184 -41.21718 -40.24751 -38.58610 -36.96267 -35.92438 -34.15564 -33.91503 -33.33086 -32.56711 -31.02317 -29.39548 -28.23512 -26.49555 -25.84693 -25.53568 -24.25440 -22.70186 -22.45312 -21.04730 -20.65933 -19.86692 -18.65591 -18.35046 -17.84479 -17.62315 -17.14949 -16.85884 -16.65505 -16.36982 -16.03270 -15.82184 -15.55031 -15.42024 -15.36439 -14.99329 -14.64764 -14.54123 -14.09495 -13.96625 -13.77116 -13.48846 -13.31107 -13.08936 -12.95766 -12.87628 -12.62520 -12.52205 -12.44099 -12.22883 -12.15721 -12.14837 -12.08040 -11.68521 -11.45187 -11.23956 -10.98657 -10.77502 -10.69221 -10.20096 -10.01289 -9.65660 -9.16152 -8.46949 -5.95640 -0.54967 -0.24890 1.38756 1.40144 1.51516 1.65641 1.79839 2.03786 2.28350 2.60802 2.81015 2.90442 3.19623 3.33385 3.39516 3.53373 3.70093 3.74830 3.79223 3.93729 4.03851 4.16707 4.23597 4.27400 4.32388 4.42708 4.50237 4.51376 4.55544 4.63765 4.71880 4.79336 4.79642 4.87548 4.92078 5.04297 5.13258 5.15954 5.22771 5.29058 5.40688 5.52388 5.69651 5.90804 6.03483 6.17043 6.33187 6.60803 7.04888 7.12419 7.51159 7.54805 8.11623 8.70415 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.002184 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.089922 B =12819.572334 C =13428.281822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.108 3.892 3 N -0.586 5.586 4 C 0.556 3.444 5 O -0.528 6.528 6 C 0.003 3.997 7 C -0.082 4.082 8 C -0.103 4.103 9 C 0.061 3.939 10 N -0.276 5.276 11 N -0.208 5.208 12 C 0.146 3.854 13 H 0.134 0.866 14 C -0.122 4.122 15 C 0.048 3.952 16 N -0.502 5.502 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.613 6.613 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.036 3.964 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.197 0.803 37 H 0.217 0.783 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 -22.478 -15.031 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 N -0.317 5.317 4 C 0.341 3.659 5 O -0.402 6.402 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.101 4.101 10 N -0.119 5.119 11 N -0.055 5.055 12 C 0.042 3.958 13 H 0.152 0.848 14 C -0.161 4.161 15 C -0.080 4.080 16 N -0.227 5.227 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.499 6.499 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.199 1.199 29 C -0.092 4.092 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.174 0.826 36 H 0.214 0.786 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.010 -22.408 -14.781 29.831 hybrid contribution 1.161 1.825 0.333 2.188 sum -11.849 -20.583 -14.448 27.800 Atomic orbital electron populations 1.21995 0.95185 1.02665 1.00631 1.22037 0.95354 0.79746 1.04186 1.48035 1.63980 1.15233 1.04488 1.18055 0.79248 0.85074 0.83503 1.90995 1.42949 1.19897 1.86406 1.22856 1.00131 0.95671 0.95583 1.22626 0.95786 1.00823 0.91906 1.22910 0.94566 0.94909 1.00816 1.25135 0.92667 0.93784 0.98510 1.73106 1.15088 1.27007 0.96651 1.73711 1.05357 1.05491 1.20939 1.22078 0.93326 0.94371 0.86031 0.84821 1.22786 0.97812 0.94319 1.01165 1.23137 0.89147 1.00492 0.95196 1.64489 1.01162 1.10590 1.46447 1.22002 0.96730 0.91881 0.97749 1.20700 0.84037 0.90413 0.82089 1.90445 1.33765 1.69163 1.56550 1.41911 1.22246 1.09398 1.47443 1.19616 1.08392 0.85715 1.32473 0.90408 1.26057 0.94607 1.04626 0.96071 1.69671 1.11274 1.38703 1.36504 0.84979 0.78074 0.76814 0.78394 1.19619 1.19332 1.19858 1.23207 0.96930 0.87442 1.01638 0.90315 0.93218 0.93956 0.88832 0.88492 0.82557 0.78578 0.76666 0.92332 0.89011 0.94604 0.91154 0.91003 0.88160 0.77045 0.91278 0.91438 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.55 71.98 0.69 -1.64 16 2 C 0.11 1.76 5.66 86.38 0.49 2.25 16 3 N -0.59 -13.09 2.45 -795.99 -1.95 -15.04 16 4 C 0.56 15.18 6.50 86.88 0.56 15.74 16 5 O -0.53 -18.77 13.29 -3.76 -0.05 -18.82 16 6 C 0.00 0.07 6.61 41.99 0.28 0.34 16 7 C -0.08 -1.45 9.73 22.77 0.22 -1.22 16 8 C -0.10 -0.95 10.20 22.49 0.23 -0.72 16 9 C 0.06 0.58 11.31 84.72 0.96 1.54 16 10 N -0.28 -4.71 11.51 -57.15 -0.66 -5.37 16 11 N -0.21 -4.16 5.26 -48.49 -0.26 -4.41 16 12 C 0.15 3.40 3.46 45.87 0.16 3.56 16 13 H 0.13 2.16 7.82 -2.39 -0.02 2.14 16 14 C -0.12 -3.55 6.26 31.80 0.20 -3.35 16 15 C 0.05 1.80 5.31 86.65 0.46 2.26 16 16 N -0.50 -18.87 4.88 -887.57 -4.33 -23.21 16 17 C 0.05 1.85 5.52 85.56 0.47 2.32 16 18 C 0.44 22.33 7.49 87.66 0.66 22.99 16 19 O -0.61 -35.61 13.09 -3.07 -0.04 -35.65 16 20 N -0.57 -30.76 5.29 -306.98 -1.62 -32.38 16 21 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 25 Si 0.99 44.09 29.55 68.60 2.03 46.11 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 C 0.04 1.02 5.51 86.45 0.48 1.50 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.85 6.34 -2.39 -0.02 0.84 16 33 H 0.09 1.66 5.63 -2.39 -0.01 1.64 16 34 H 0.10 1.10 7.89 -2.39 -0.02 1.08 16 35 H 0.16 2.88 7.73 -2.91 -0.02 2.86 16 36 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 37 H 0.22 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.06 2.02 6.21 -2.39 -0.01 2.01 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.28 8.02 -2.39 -0.02 1.26 16 41 H 0.07 3.32 5.96 -2.39 -0.01 3.30 16 42 H 0.07 2.39 7.81 -2.39 -0.02 2.38 16 43 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.40 20.18 7.90 -92.71 -0.73 19.45 16 45 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.07 1.57 7.57 -2.39 -0.02 1.55 16 47 H 0.07 2.06 7.13 -2.39 -0.02 2.05 16 Total: -1.00 -79.82 378.10 0.81 -79.00 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.28 Total: 33.80 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 7.13 Total: 26.57 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -8.53 Total: -131.01 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.09 Total: -54.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -79.82 0.81 -79.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269348331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.828 kcal (2) G-P(sol) polarization free energy of solvation -79.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds