Wall clock time and date at job start Wed Apr 1 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47502 * 2 1 4 4 C 1.34777 * 120.00448 * 274.06515 * 3 2 1 5 5 O 1.21514 * 120.00568 * 185.32634 * 4 3 2 6 6 C 1.48161 * 119.99605 * 5.32103 * 4 3 2 7 7 C 1.39717 * 120.18198 * 185.87544 * 6 4 3 8 8 C 1.38820 * 117.89555 * 179.74105 * 7 6 4 9 9 C 1.38571 * 118.07017 * 0.52639 * 8 7 6 10 10 N 1.32172 * 120.06621 * 359.72615 * 9 8 7 11 11 N 1.28345 * 122.30482 * 0.02562 * 10 9 8 12 12 C 1.46500 * 120.00071 * 94.05866 * 3 2 1 13 13 H 1.08999 * 110.64173 * 358.30366 * 12 3 2 14 14 C 1.54593 * 110.72591 * 121.45634 * 12 3 2 15 15 C 1.53997 * 105.13821 * 140.31723 * 14 12 3 16 16 N 1.47901 * 107.05897 * 1.22446 * 15 14 12 17 17 C 1.46901 * 110.99888 * 214.15549 * 16 15 14 18 18 C 1.50703 * 109.46862 * 176.81865 * 17 16 15 19 19 O 1.21290 * 120.00208 * 358.07512 * 18 17 16 20 20 N 1.34776 * 119.99782 * 178.07045 * 18 17 16 21 21 C 1.37095 * 119.99863 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00401 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99932 * 179.72269 * 21 20 18 24 24 N 1.31411 * 120.00084 * 0.28155 * 23 21 20 25 25 Si 1.86808 * 120.00027 * 180.27355 * 23 21 20 26 26 H 1.48497 * 109.46956 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46924 * 120.00269 * 25 23 21 28 28 H 1.48503 * 109.46980 * 240.00171 * 25 23 21 29 29 C 1.48525 * 105.82166 * 334.67209 * 16 15 14 30 30 H 1.08993 * 109.46921 * 299.99810 * 1 2 3 31 31 H 1.08999 * 109.46814 * 59.99960 * 1 2 3 32 32 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47365 * 240.00053 * 2 1 3 34 34 H 1.09002 * 109.47303 * 119.99935 * 2 1 3 35 35 H 1.08000 * 121.05097 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.96456 * 180.27345 * 8 7 6 37 37 H 1.08003 * 119.96744 * 179.70954 * 9 8 7 38 38 H 1.08999 * 110.30546 * 21.40651 * 14 12 3 39 39 H 1.08995 * 110.39502 * 259.27550 * 14 12 3 40 40 H 1.09005 * 109.91421 * 241.87076 * 15 14 12 41 41 H 1.08997 * 110.08279 * 120.67054 * 15 14 12 42 42 H 1.09004 * 109.47023 * 56.82359 * 17 16 15 43 43 H 1.08994 * 109.47271 * 296.81792 * 17 16 15 44 44 H 0.97004 * 120.00030 * 359.97438 * 20 18 17 45 45 H 0.97002 * 120.00100 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.67021 * 157.64331 * 29 16 15 47 47 H 1.09007 * 110.67070 * 280.77112 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1651 2.0442 -1.1642 5 8 2.6606 3.1536 -1.1734 6 6 1.7222 1.4201 -2.4329 7 6 1.9826 2.0486 -3.6533 8 6 1.5513 1.4193 -4.8130 9 6 0.8799 0.2134 -4.6894 10 7 0.6711 -0.3087 -3.4933 11 7 1.0704 0.2633 -2.4160 12 6 2.3473 2.0418 1.2655 13 1 2.1448 1.3807 2.1081 14 6 3.8227 2.5033 1.2745 15 6 3.8089 3.8812 1.9622 16 7 2.4080 4.1610 2.3450 17 6 2.1101 5.5957 2.2400 18 6 0.6568 5.8318 2.5615 19 8 -0.0684 4.8933 2.8155 20 7 0.1629 7.0858 2.5668 21 6 -1.1590 7.3006 2.8597 22 1 -1.8048 6.4650 3.0859 23 6 -1.6669 8.5940 2.8708 24 7 -0.8813 9.6107 2.5951 25 14 -3.4664 8.8874 3.2775 26 1 -4.1308 7.5874 3.5489 27 1 -3.5673 9.7547 4.4786 28 1 -4.1312 9.5534 2.1287 29 6 1.5670 3.3728 1.4083 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.5063 2.9923 -3.6933 36 1 1.7301 1.8588 -5.7832 37 1 0.5267 -0.3003 -5.5714 38 1 4.1971 2.5932 0.2548 39 1 4.4361 1.8035 1.8419 40 1 4.1645 4.6449 1.2705 41 1 4.4399 3.8623 2.8507 42 1 2.3179 5.9366 1.2258 43 1 2.7323 6.1484 2.9438 44 1 0.7430 7.8364 2.3640 45 1 -1.2358 10.5136 2.6032 46 1 0.5792 3.1960 1.8338 47 1 1.4875 3.8772 0.4452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269348332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:55 Heat of formation + Delta-G solvation = 31.505701 kcal Electronic energy + Delta-G solvation = -31168.159499 eV Core-core repulsion = 26967.138565 eV Total energy + Delta-G solvation = -4201.020934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.67188 -40.23019 -38.56592 -37.19589 -36.02843 -33.88712 -33.54822 -33.10641 -31.62190 -31.10736 -29.94104 -28.24167 -26.69489 -25.53332 -24.98002 -24.09089 -23.45409 -21.84698 -20.86269 -19.88256 -19.11451 -17.88905 -17.80756 -17.58232 -17.18050 -16.18888 -15.99960 -15.83271 -15.28179 -14.92791 -14.71699 -14.66403 -14.35191 -14.20511 -13.96862 -13.88407 -13.54582 -13.34951 -13.14509 -13.00149 -12.37142 -12.28605 -11.99971 -11.82454 -11.50096 -11.48168 -11.35530 -11.29602 -11.15710 -11.09621 -10.76169 -10.72590 -10.56214 -10.31159 -10.26701 -10.18174 -10.06607 -9.80712 -9.45428 -8.73800 -8.32022 -7.93584 -7.81418 -6.37143 -3.77590 0.08845 0.34582 2.39741 2.64848 3.19089 3.29094 3.29400 3.36620 3.50888 3.96571 3.98353 4.09672 4.16983 4.28224 4.42204 4.49906 4.65092 4.84800 4.85639 4.92976 5.15490 5.24901 5.25628 5.31332 5.37432 5.41924 5.48701 5.51692 5.60566 5.63775 5.82699 5.90285 5.95872 5.98701 6.01408 6.02378 6.13418 6.28200 6.35800 6.38568 6.57469 6.69397 7.19571 7.30159 7.37010 7.59692 7.86089 8.11517 8.16830 8.67212 9.22966 9.59924 10.11976 10.80870 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.002799 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.397804 B =10001.387275 C =10953.394982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.582 5.582 4 C 0.571 3.429 5 O -0.518 6.518 6 C 0.023 3.977 7 C -0.064 4.064 8 C -0.123 4.123 9 C 0.054 3.946 10 N -0.249 5.249 11 N -0.198 5.198 12 C 0.140 3.860 13 H 0.106 0.894 14 C -0.137 4.137 15 C 0.040 3.960 16 N -0.491 5.491 17 C 0.038 3.962 18 C 0.446 3.554 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.031 3.969 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.109 0.891 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.073 -18.332 -13.964 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.313 5.313 4 C 0.356 3.644 5 O -0.393 6.393 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.152 4.152 9 C -0.108 4.108 10 N -0.091 5.091 11 N -0.045 5.045 12 C 0.036 3.964 13 H 0.124 0.876 14 C -0.176 4.176 15 C -0.088 4.088 16 N -0.216 5.216 17 C -0.094 4.094 18 C 0.232 3.768 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.097 4.097 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.077 -19.530 -12.324 24.813 hybrid contribution 0.173 2.262 -1.782 2.885 sum 9.250 -17.268 -14.106 24.140 Atomic orbital electron populations 1.22085 0.95079 1.02218 1.02093 1.21932 0.95603 0.80749 1.03119 1.47903 1.63320 1.14644 1.05390 1.17604 0.79351 0.84979 0.82494 1.90803 1.43512 1.18888 1.86099 1.22960 0.98714 0.94856 0.95709 1.22460 0.95131 1.00462 0.91282 1.22471 0.96733 0.95718 1.00318 1.24496 0.94055 0.93837 0.98418 1.73198 1.13824 1.26456 0.95665 1.73785 1.04722 1.05935 1.20058 1.22227 0.94850 0.95245 0.84056 0.87587 1.22719 0.96220 0.96902 1.01765 1.22800 0.91555 0.95862 0.98616 1.64538 1.02174 1.06104 1.48738 1.22068 0.97024 0.89647 1.00621 1.19730 0.88622 0.83966 0.84496 1.90451 1.60179 1.41784 1.54061 1.41855 1.10874 1.06176 1.61240 1.19742 0.85579 0.93613 1.43651 0.87908 1.25257 1.00165 0.95054 0.97558 1.69626 1.36087 0.99289 1.49398 0.85815 0.82149 0.78551 0.77917 1.19236 1.20756 1.20825 1.23678 0.98813 0.91513 0.95681 0.92691 0.92048 0.91604 0.88533 0.90686 0.82011 0.82484 0.80648 0.90244 0.91279 0.93689 0.90595 0.93173 0.89267 0.77482 0.91988 0.87258 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.53 37.16 0.35 -1.40 16 2 C 0.11 1.13 5.67 -4.04 -0.02 1.11 16 3 N -0.58 -7.47 2.55 -164.98 -0.42 -7.89 16 4 C 0.57 7.93 6.76 -12.18 -0.08 7.85 16 5 O -0.52 -8.42 12.74 5.35 0.07 -8.35 16 6 C 0.02 0.27 6.59 -82.83 -0.55 -0.28 16 7 C -0.06 -0.59 9.73 -38.81 -0.38 -0.96 16 8 C -0.12 -0.76 10.20 -39.24 -0.40 -1.16 16 9 C 0.05 0.37 11.31 -17.28 -0.20 0.17 16 10 N -0.25 -2.53 11.51 30.58 0.35 -2.18 16 11 N -0.20 -2.24 5.22 33.33 0.17 -2.06 16 12 C 0.14 1.95 3.55 -66.07 -0.23 1.72 16 13 H 0.11 1.36 7.83 -51.93 -0.41 0.95 16 14 C -0.14 -1.78 6.14 -25.37 -0.16 -1.93 16 15 C 0.04 0.59 6.70 -2.75 -0.02 0.57 16 16 N -0.49 -8.96 5.16 -231.89 -1.20 -10.15 16 17 C 0.04 0.75 5.30 -4.97 -0.03 0.72 16 18 C 0.45 11.05 7.54 -10.98 -0.08 10.96 16 19 O -0.58 -15.99 13.52 5.55 0.08 -15.91 16 20 N -0.56 -14.89 5.29 -10.96 -0.06 -14.95 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.17 13.05 55.50 0.72 -24.44 16 25 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 C 0.03 0.57 4.88 -1.90 -0.01 0.57 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 6.28 -51.93 -0.33 0.47 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.99 5.66 -51.93 -0.29 0.70 16 34 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.16 1.36 7.73 -52.49 -0.41 0.95 16 36 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.18 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.08 1.10 6.15 -51.93 -0.32 0.78 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.11 2.34 6.23 -51.93 -0.32 2.02 16 47 H 0.06 1.14 5.81 -51.93 -0.30 0.84 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -34.32 378.43 -8.03 -42.35 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.39 Total: 11.59 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -2.04 Total: 9.80 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.42 Total: -61.67 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.14 Total: -24.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.32 -8.03 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269348332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.853 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds