Wall clock time and date at job start Wed Apr 1 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47502 * 2 1 4 4 C 1.34777 * 120.00448 * 274.06515 * 3 2 1 5 5 O 1.21514 * 120.00568 * 185.32634 * 4 3 2 6 6 C 1.48161 * 119.99605 * 5.32103 * 4 3 2 7 7 C 1.39717 * 120.18198 * 185.87544 * 6 4 3 8 8 C 1.38820 * 117.89555 * 179.74105 * 7 6 4 9 9 C 1.38571 * 118.07017 * 0.52639 * 8 7 6 10 10 N 1.32172 * 120.06621 * 359.72615 * 9 8 7 11 11 N 1.28345 * 122.30482 * 0.02562 * 10 9 8 12 12 C 1.46500 * 120.00071 * 94.05866 * 3 2 1 13 13 H 1.08999 * 110.64173 * 358.30366 * 12 3 2 14 14 C 1.54593 * 110.72591 * 121.45634 * 12 3 2 15 15 C 1.53997 * 105.13821 * 140.31723 * 14 12 3 16 16 N 1.47901 * 107.05897 * 1.22446 * 15 14 12 17 17 C 1.46901 * 110.99888 * 214.15549 * 16 15 14 18 18 C 1.50703 * 109.46862 * 176.81865 * 17 16 15 19 19 O 1.21290 * 120.00208 * 358.07512 * 18 17 16 20 20 N 1.34776 * 119.99782 * 178.07045 * 18 17 16 21 21 C 1.37095 * 119.99863 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00401 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99932 * 179.72269 * 21 20 18 24 24 N 1.31411 * 120.00084 * 0.28155 * 23 21 20 25 25 Si 1.86808 * 120.00027 * 180.27355 * 23 21 20 26 26 H 1.48497 * 109.46956 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46924 * 120.00269 * 25 23 21 28 28 H 1.48503 * 109.46980 * 240.00171 * 25 23 21 29 29 C 1.48525 * 105.82166 * 334.67209 * 16 15 14 30 30 H 1.08993 * 109.46921 * 299.99810 * 1 2 3 31 31 H 1.08999 * 109.46814 * 59.99960 * 1 2 3 32 32 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47365 * 240.00053 * 2 1 3 34 34 H 1.09002 * 109.47303 * 119.99935 * 2 1 3 35 35 H 1.08000 * 121.05097 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.96456 * 180.27345 * 8 7 6 37 37 H 1.08003 * 119.96744 * 179.70954 * 9 8 7 38 38 H 1.08999 * 110.30546 * 21.40651 * 14 12 3 39 39 H 1.08995 * 110.39502 * 259.27550 * 14 12 3 40 40 H 1.09005 * 109.91421 * 241.87076 * 15 14 12 41 41 H 1.08997 * 110.08279 * 120.67054 * 15 14 12 42 42 H 1.09004 * 109.47023 * 56.82359 * 17 16 15 43 43 H 1.08994 * 109.47271 * 296.81792 * 17 16 15 44 44 H 0.97004 * 120.00030 * 359.97438 * 20 18 17 45 45 H 0.97002 * 120.00100 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.67021 * 157.64331 * 29 16 15 47 47 H 1.09007 * 110.67070 * 280.77112 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1651 2.0442 -1.1642 5 8 2.6606 3.1536 -1.1734 6 6 1.7222 1.4201 -2.4329 7 6 1.9826 2.0486 -3.6533 8 6 1.5513 1.4193 -4.8130 9 6 0.8799 0.2134 -4.6894 10 7 0.6711 -0.3087 -3.4933 11 7 1.0704 0.2633 -2.4160 12 6 2.3473 2.0418 1.2655 13 1 2.1448 1.3807 2.1081 14 6 3.8227 2.5033 1.2745 15 6 3.8089 3.8812 1.9622 16 7 2.4080 4.1610 2.3450 17 6 2.1101 5.5957 2.2400 18 6 0.6568 5.8318 2.5615 19 8 -0.0684 4.8933 2.8155 20 7 0.1629 7.0858 2.5668 21 6 -1.1590 7.3006 2.8597 22 1 -1.8048 6.4650 3.0859 23 6 -1.6669 8.5940 2.8708 24 7 -0.8813 9.6107 2.5951 25 14 -3.4664 8.8874 3.2775 26 1 -4.1308 7.5874 3.5489 27 1 -3.5673 9.7547 4.4786 28 1 -4.1312 9.5534 2.1287 29 6 1.5670 3.3728 1.4083 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.5063 2.9923 -3.6933 36 1 1.7301 1.8588 -5.7832 37 1 0.5267 -0.3003 -5.5714 38 1 4.1971 2.5932 0.2548 39 1 4.4361 1.8035 1.8419 40 1 4.1645 4.6449 1.2705 41 1 4.4399 3.8623 2.8507 42 1 2.3179 5.9366 1.2258 43 1 2.7323 6.1484 2.9438 44 1 0.7430 7.8364 2.3640 45 1 -1.2358 10.5136 2.6032 46 1 0.5792 3.1960 1.8338 47 1 1.4875 3.8772 0.4452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269348332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:54 Heat of formation + Delta-G solvation = 5.828333 kcal Electronic energy + Delta-G solvation = -31169.272953 eV Core-core repulsion = 26967.138565 eV Total energy + Delta-G solvation = -4202.134388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.46543 -41.28820 -40.25491 -38.68026 -37.09702 -35.96347 -34.20843 -34.00744 -33.33499 -32.63984 -31.03275 -29.47703 -28.29630 -26.61642 -25.86996 -25.60382 -24.35802 -22.97095 -22.17769 -21.07614 -20.83375 -19.89873 -18.75744 -18.43681 -17.89581 -17.68613 -17.23324 -16.81502 -16.72036 -16.45434 -16.13283 -15.91531 -15.57190 -15.52081 -15.33805 -14.84101 -14.70731 -14.67768 -14.42194 -14.00080 -13.84687 -13.59575 -13.55983 -13.23904 -12.94931 -12.92979 -12.62572 -12.45374 -12.43326 -12.34550 -12.22616 -12.14495 -12.06225 -11.68798 -11.50875 -11.29458 -11.05844 -10.83284 -10.74853 -10.29330 -10.04549 -9.75848 -9.36911 -8.49161 -5.98193 -0.61970 -0.28356 1.34012 1.38716 1.49111 1.53654 1.69959 2.00470 2.26360 2.53669 2.69144 2.88144 3.16933 3.30168 3.41578 3.49428 3.63953 3.70985 3.76636 3.89008 4.02208 4.12385 4.18086 4.24892 4.32587 4.35844 4.45547 4.46658 4.51966 4.60267 4.71630 4.75063 4.80921 4.86662 4.89960 5.01412 5.06171 5.11753 5.15504 5.18566 5.38174 5.44640 5.53414 5.81288 5.92526 6.06240 6.20122 6.57067 6.85145 7.09513 7.46763 7.51579 8.07390 8.68835 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.002799 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.397804 B =10001.387275 C =10953.394982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.111 3.889 3 N -0.582 5.582 4 C 0.564 3.436 5 O -0.551 6.551 6 C -0.001 4.001 7 C -0.080 4.080 8 C -0.102 4.102 9 C 0.062 3.938 10 N -0.276 5.276 11 N -0.210 5.210 12 C 0.146 3.854 13 H 0.122 0.878 14 C -0.126 4.126 15 C 0.040 3.960 16 N -0.503 5.503 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.270 1.270 29 C 0.038 3.962 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.201 0.799 37 H 0.218 0.782 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.069 0.931 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 -19.372 -15.306 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 N -0.312 5.312 4 C 0.350 3.650 5 O -0.429 6.429 6 C -0.147 4.147 7 C -0.109 4.109 8 C -0.130 4.130 9 C -0.100 4.100 10 N -0.118 5.118 11 N -0.058 5.058 12 C 0.042 3.958 13 H 0.140 0.860 14 C -0.165 4.165 15 C -0.087 4.087 16 N -0.228 5.228 17 C -0.081 4.081 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.195 1.195 29 C -0.091 4.091 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.180 0.820 36 H 0.218 0.782 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.910 -20.588 -13.670 26.626 hybrid contribution -0.105 2.548 -1.483 2.950 sum 9.805 -18.039 -15.152 25.518 Atomic orbital electron populations 1.22018 0.95889 1.02762 1.00135 1.22061 0.94809 0.79633 1.04583 1.47992 1.63026 1.15374 1.04788 1.18034 0.78743 0.84686 0.83501 1.90764 1.45127 1.20229 1.86789 1.22773 1.00497 0.95913 0.95472 1.22642 0.95803 1.00824 0.91596 1.22945 0.94369 0.94797 1.00932 1.25190 0.92538 0.93879 0.98435 1.73122 1.14792 1.27239 0.96686 1.73712 1.05013 1.05902 1.21135 1.22132 0.94889 0.93447 0.85292 0.86030 1.22673 0.95540 0.96576 1.01682 1.22927 0.89271 0.96734 0.99807 1.64526 1.04310 1.04877 1.49051 1.21945 0.93472 0.91343 1.01375 1.20648 0.90601 0.82980 0.82888 1.90437 1.61747 1.42627 1.55087 1.41923 1.10439 1.06894 1.61823 1.19697 0.86638 0.93699 1.46124 0.90344 1.26081 1.04424 0.94249 0.96606 1.69688 1.37782 0.99756 1.48996 0.84854 0.76775 0.78226 0.78357 1.19797 1.19333 1.19539 1.23405 0.97923 0.93997 0.93797 0.94526 0.94027 0.89752 0.87903 0.88271 0.81989 0.78202 0.76527 0.91048 0.88021 0.93929 0.88176 0.92682 0.86840 0.77121 0.91252 0.91273 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.53 71.98 0.69 -2.76 16 2 C 0.11 2.27 5.67 86.38 0.49 2.76 16 3 N -0.58 -15.19 2.55 -794.18 -2.02 -17.21 16 4 C 0.56 16.30 6.76 86.88 0.59 16.88 16 5 O -0.55 -18.80 12.74 -3.76 -0.05 -18.84 16 6 C 0.00 -0.03 6.59 41.99 0.28 0.25 16 7 C -0.08 -1.41 9.73 22.77 0.22 -1.19 16 8 C -0.10 -0.97 10.20 22.49 0.23 -0.74 16 9 C 0.06 0.66 11.31 84.72 0.96 1.62 16 10 N -0.28 -5.27 11.51 -57.15 -0.66 -5.93 16 11 N -0.21 -4.75 5.22 -48.48 -0.25 -5.00 16 12 C 0.15 4.10 3.55 46.20 0.16 4.26 16 13 H 0.12 3.00 7.83 -2.39 -0.02 2.99 16 14 C -0.13 -3.09 6.14 31.47 0.19 -2.90 16 15 C 0.04 1.12 6.70 86.45 0.58 1.70 16 16 N -0.50 -18.52 5.16 -887.56 -4.58 -23.09 16 17 C 0.05 2.01 5.30 85.56 0.45 2.47 16 18 C 0.44 22.78 7.54 87.66 0.66 23.44 16 19 O -0.61 -35.61 13.52 -3.06 -0.04 -35.65 16 20 N -0.57 -31.39 5.29 -306.98 -1.62 -33.01 16 21 C -0.33 -19.69 9.68 84.04 0.81 -18.88 16 22 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -51.46 13.05 21.66 0.28 -51.18 16 25 Si 0.99 44.33 29.55 68.60 2.03 46.35 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 C 0.04 1.45 4.88 86.65 0.42 1.87 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.12 6.28 -2.39 -0.01 1.11 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 2.05 5.66 -2.38 -0.01 2.04 16 34 H 0.10 1.54 7.88 -2.39 -0.02 1.52 16 35 H 0.16 2.76 7.73 -2.91 -0.02 2.73 16 36 H 0.20 0.14 8.06 -2.91 -0.02 0.11 16 37 H 0.22 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.07 1.91 6.15 -2.39 -0.01 1.90 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.22 7.68 -2.38 -0.02 1.20 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.16 7.99 -2.39 -0.02 2.14 16 43 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.40 20.66 7.90 -92.71 -0.73 19.93 16 45 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.07 3.19 6.23 -2.39 -0.01 3.18 16 47 H 0.03 1.28 5.81 -2.38 -0.01 1.27 16 Total: -1.00 -79.08 378.43 0.57 -78.51 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.28 Total: 36.59 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.20 Total: 28.47 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -8.85 Total: -135.42 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.09 Total: -54.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.08 0.57 -78.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269348332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.336 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds