Wall clock time and date at job start Wed Apr 1 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00092 * 2 1 4 4 O 1.21572 * 120.00181 * 183.54295 * 3 2 1 5 5 C 1.47708 * 119.99864 * 3.54823 * 3 2 1 6 6 C 1.41501 * 126.52281 * 173.45389 * 5 3 2 7 7 C 1.35355 * 105.50898 * 179.97438 * 6 5 3 8 8 C 1.50701 * 126.39086 * 179.97438 * 7 6 5 9 9 C 1.52995 * 117.51992 * 146.28715 * 8 7 6 10 10 C 1.52992 * 117.50054 * 214.91782 * 8 7 6 11 11 N 1.35041 * 107.22852 * 0.26285 * 7 6 5 12 12 H 0.97001 * 124.88268 * 179.70827 * 11 7 6 13 13 N 1.28467 * 110.22640 * 359.54986 * 11 7 6 14 14 C 1.46496 * 120.00180 * 180.02562 * 2 1 3 15 15 C 1.53933 * 113.73641 * 36.72510 * 14 2 1 16 16 N 1.47961 * 86.18461 * 221.92320 * 15 14 2 17 17 C 1.46894 * 111.00405 * 137.57971 * 16 15 14 18 18 C 1.50694 * 109.47070 * 70.63992 * 17 16 15 19 19 O 1.21297 * 120.00235 * 0.02562 * 18 17 16 20 20 N 1.34785 * 120.00157 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99911 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00134 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99777 * 180.02562 * 21 20 18 24 24 N 1.31405 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99904 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47398 * 59.99768 * 25 23 21 27 27 H 1.48497 * 109.47204 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47250 * 299.99528 * 25 23 21 29 29 C 1.47964 * 90.76229 * 24.68718 * 16 15 14 30 30 H 1.08995 * 109.47182 * 84.08894 * 1 2 3 31 31 H 1.09003 * 109.47110 * 204.08603 * 1 2 3 32 32 H 1.08997 * 109.46857 * 324.08866 * 1 2 3 33 33 H 1.08009 * 127.24075 * 0.02562 * 6 5 3 34 34 H 1.09000 * 115.54879 * 0.58769 * 8 7 6 35 35 H 1.09003 * 117.49744 * 214.97752 * 9 8 7 36 36 H 1.09002 * 117.49910 * 359.97438 * 9 8 7 37 37 H 1.09000 * 117.50096 * 359.97438 * 10 8 7 38 38 H 1.09008 * 117.49939 * 144.97255 * 10 8 7 39 39 H 1.09002 * 112.94104 * 168.43085 * 14 2 1 40 40 H 1.09000 * 113.75791 * 336.23986 * 15 14 2 41 41 H 1.08997 * 113.76177 * 107.60197 * 15 14 2 42 42 H 1.09001 * 109.47576 * 190.64539 * 17 16 15 43 43 H 1.09006 * 109.47328 * 310.64305 * 17 16 15 44 44 H 0.96994 * 120.00090 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99892 * 180.02562 * 24 23 21 46 46 H 1.08999 * 113.76471 * 220.99845 * 29 16 15 47 47 H 1.09004 * 113.85961 * 89.64133 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1682 -0.0651 5 6 1.4025 2.4452 0.0792 6 6 1.9670 3.7352 0.2187 7 6 0.9169 4.5888 0.2456 8 6 0.9866 6.0881 0.3813 9 6 -0.0722 6.9143 -0.3515 10 6 -0.1269 6.7784 1.1714 11 7 -0.2054 3.8459 0.1345 12 1 -1.1078 4.2016 0.1297 13 7 0.0944 2.6009 0.0327 14 6 2.1975 -1.2687 -0.0006 15 6 1.5292 -2.3696 -0.8437 16 7 1.8709 -3.2882 0.2648 17 6 0.7555 -4.1984 0.5571 18 6 0.6095 -5.1912 -0.5671 19 8 1.3610 -5.1453 -1.5182 20 7 -0.3562 -6.1301 -0.5160 21 6 -0.4887 -7.0336 -1.5385 22 1 0.1805 -6.9927 -2.3853 23 6 -1.4845 -8.0012 -1.4860 24 7 -2.2990 -8.0505 -0.4559 25 14 -1.6655 -9.2318 -2.8796 26 1 -0.4111 -10.0150 -3.0145 27 1 -2.7934 -10.1515 -2.5845 28 1 -1.9357 -8.5075 -4.1476 29 6 1.8972 -2.1581 1.2195 30 1 -0.3633 0.1058 -1.0221 31 1 -0.3633 -0.9382 0.4194 32 1 -0.3633 0.8323 0.6028 33 1 3.0153 3.9859 0.2883 34 1 1.9901 6.5073 0.4547 35 1 0.2347 7.8770 -0.7603 36 1 -0.8194 6.3735 -0.9324 37 1 -0.9102 6.1483 1.5927 38 1 0.1442 7.6516 1.7650 39 1 3.2616 -1.1448 -0.2018 40 1 0.4574 -2.2274 -0.9816 41 1 2.0533 -2.5896 -1.7737 42 1 0.9546 -4.7299 1.4877 43 1 -0.1656 -3.6241 0.6566 44 1 -0.9573 -6.1665 0.2443 45 1 -2.9939 -8.7262 -0.4191 46 1 2.7153 -2.2089 1.9379 47 1 0.9337 -1.9526 1.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269849206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:51 Heat of formation + Delta-G solvation = 88.505659 kcal Electronic energy + Delta-G solvation = -29526.429338 eV Core-core repulsion = 25327.880108 eV Total energy + Delta-G solvation = -4198.549230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.14148 -40.57122 -38.91233 -37.77884 -37.58695 -35.02759 -33.86739 -32.21115 -31.29892 -31.04328 -29.78434 -27.09254 -26.03009 -25.73662 -24.55489 -23.95545 -23.08312 -22.70002 -21.47891 -19.82340 -19.24670 -18.83708 -18.31192 -17.87428 -17.06254 -16.49149 -16.30821 -16.11619 -16.00512 -15.44940 -14.93048 -14.64459 -14.58903 -14.47351 -13.91873 -13.86411 -13.72355 -13.34403 -12.95154 -12.83313 -12.70509 -12.50805 -12.45558 -12.29788 -12.01513 -11.76629 -11.68371 -11.49653 -11.19034 -11.06887 -10.94236 -10.88570 -10.53252 -10.43022 -10.21710 -10.17187 -9.73431 -9.48439 -9.19593 -8.67887 -8.66349 -8.22910 -7.95286 -6.40727 -3.81393 1.23516 1.64176 2.36396 2.83763 3.16961 3.21001 3.26481 3.29556 3.31207 3.77877 3.90760 4.02466 4.08310 4.11493 4.25152 4.25964 4.48165 4.59097 4.73077 4.89898 4.92650 5.02649 5.09889 5.15510 5.22960 5.25439 5.28415 5.36221 5.36730 5.47520 5.50824 5.56378 5.69558 5.74069 5.81541 5.83390 6.01797 6.04276 6.23213 6.28416 6.41368 6.58488 6.63182 7.16145 7.25742 7.48064 7.56017 8.03944 8.06594 8.62568 9.18989 9.55052 10.07046 10.76984 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.001780 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.640432 B =15725.155740 C =16397.508553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.592 5.592 3 C 0.602 3.398 4 O -0.531 6.531 5 C -0.004 4.004 6 C -0.169 4.169 7 C 0.047 3.953 8 C -0.088 4.088 9 C -0.173 4.173 10 C -0.173 4.173 11 N -0.384 5.384 12 H 0.442 0.558 13 N -0.251 5.251 14 C 0.113 3.887 15 C 0.014 3.986 16 N -0.448 5.448 17 C 0.014 3.986 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.013 4.013 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 30.596 6.350 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.324 5.324 3 C 0.388 3.612 4 O -0.405 6.405 5 C -0.164 4.164 6 C -0.196 4.196 7 C -0.078 4.078 8 C -0.107 4.107 9 C -0.211 4.211 10 C -0.211 4.211 11 N -0.098 5.098 12 H 0.286 0.714 13 N -0.087 5.087 14 C 0.009 3.991 15 C -0.116 4.116 16 N -0.171 5.171 17 C -0.119 4.119 18 C 0.228 3.772 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.143 4.143 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.753 29.368 5.550 29.898 hybrid contribution -1.365 0.250 0.050 1.389 sum -0.612 29.619 5.600 30.150 Atomic orbital electron populations 1.22124 0.78617 1.03460 1.02942 1.47754 1.07525 1.05291 1.71808 1.16977 0.86156 0.81643 0.76442 1.90797 1.12791 1.86609 1.50344 1.21921 0.89643 0.95333 1.09504 1.21430 1.00019 0.89965 1.08223 1.20449 0.86832 0.93446 1.07082 1.20542 0.97549 0.86286 1.06366 1.23102 1.01144 1.02054 0.94786 1.23102 1.00393 1.03141 0.94448 1.43378 1.09342 1.03778 1.53309 0.71394 1.73795 1.16462 0.99036 1.19388 1.23311 0.98877 0.80399 0.96484 1.24267 1.00023 0.89480 0.97808 1.68373 1.37017 1.08532 1.03154 1.22442 0.93152 0.96460 0.99804 1.19678 0.84200 0.84611 0.88666 1.90531 1.45477 1.74598 1.35495 1.41854 1.29057 1.27648 1.21561 1.19655 1.14863 1.07828 1.00497 0.87976 1.25252 0.95886 0.98629 0.98158 1.69603 1.19149 1.35898 1.29751 0.85918 0.77829 0.79800 0.80672 1.19873 1.20995 1.19946 1.24517 1.02064 0.91062 0.96663 0.92190 0.91330 0.88669 0.81856 0.84828 0.87468 0.88747 0.88761 0.87477 0.85171 0.90983 0.88069 0.88981 0.92930 0.77521 0.91854 0.88716 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.35 59.85 0.50 1.28 16 2 N -0.59 -7.70 3.09 -176.44 -0.55 -8.25 16 3 C 0.60 8.47 7.68 -12.39 -0.10 8.37 16 4 O -0.53 -8.91 16.41 5.30 0.09 -8.82 16 5 C 0.00 -0.04 6.82 -82.76 -0.56 -0.61 16 6 C -0.17 -1.65 10.73 -39.37 -0.42 -2.08 16 7 C 0.05 0.34 6.64 -82.21 -0.55 -0.21 16 8 C -0.09 -0.38 6.26 -91.78 -0.57 -0.95 16 9 C -0.17 -0.52 10.22 -26.74 -0.27 -0.79 16 10 C -0.17 -0.50 10.22 -26.74 -0.27 -0.77 16 11 N -0.38 -2.64 6.80 33.50 0.23 -2.41 16 12 H 0.44 1.61 8.96 -190.44 -1.71 -0.10 16 13 N -0.25 -2.46 8.76 33.42 0.29 -2.17 16 14 C 0.11 1.60 4.40 -69.62 -0.31 1.30 16 15 C 0.01 0.22 6.14 -2.77 -0.02 0.21 16 16 N -0.45 -7.74 5.95 -239.87 -1.43 -9.16 16 17 C 0.01 0.25 5.31 -4.98 -0.03 0.22 16 18 C 0.44 10.61 7.59 -10.98 -0.08 10.53 16 19 O -0.58 -15.87 15.13 5.54 0.08 -15.79 16 20 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.01 -0.17 7.47 -2.76 -0.02 -0.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.72 6.14 -51.93 -0.32 0.40 16 32 H 0.10 0.96 5.35 -51.93 -0.28 0.68 16 33 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.11 0.22 8.14 -51.92 -0.42 -0.20 16 39 H 0.13 2.00 7.22 -51.93 -0.38 1.62 16 40 H 0.07 1.14 6.22 -51.93 -0.32 0.82 16 41 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 0.85 6.72 -51.93 -0.35 0.51 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -34.88 391.33 -10.49 -45.37 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.81 Total: 9.24 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.94 Total: 8.26 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.79 Total: -60.36 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.88 -10.49 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269849206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.877 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds