Wall clock time and date at job start Wed Apr 1 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00092 * 2 1 4 4 O 1.21572 * 120.00181 * 183.54295 * 3 2 1 5 5 C 1.47708 * 119.99864 * 3.54823 * 3 2 1 6 6 C 1.41501 * 126.52281 * 173.45389 * 5 3 2 7 7 C 1.35355 * 105.50898 * 179.97438 * 6 5 3 8 8 C 1.50701 * 126.39086 * 179.97438 * 7 6 5 9 9 C 1.52995 * 117.51992 * 146.28715 * 8 7 6 10 10 C 1.52992 * 117.50054 * 214.91782 * 8 7 6 11 11 N 1.35041 * 107.22852 * 0.26285 * 7 6 5 12 12 H 0.97001 * 124.88268 * 179.70827 * 11 7 6 13 13 N 1.28467 * 110.22640 * 359.54986 * 11 7 6 14 14 C 1.46496 * 120.00180 * 180.02562 * 2 1 3 15 15 C 1.53933 * 113.73641 * 36.72510 * 14 2 1 16 16 N 1.47961 * 86.18461 * 221.92320 * 15 14 2 17 17 C 1.46894 * 111.00405 * 137.57971 * 16 15 14 18 18 C 1.50694 * 109.47070 * 70.63992 * 17 16 15 19 19 O 1.21297 * 120.00235 * 0.02562 * 18 17 16 20 20 N 1.34785 * 120.00157 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99911 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00134 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99777 * 180.02562 * 21 20 18 24 24 N 1.31405 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99904 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47398 * 59.99768 * 25 23 21 27 27 H 1.48497 * 109.47204 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47250 * 299.99528 * 25 23 21 29 29 C 1.47964 * 90.76229 * 24.68718 * 16 15 14 30 30 H 1.08995 * 109.47182 * 84.08894 * 1 2 3 31 31 H 1.09003 * 109.47110 * 204.08603 * 1 2 3 32 32 H 1.08997 * 109.46857 * 324.08866 * 1 2 3 33 33 H 1.08009 * 127.24075 * 0.02562 * 6 5 3 34 34 H 1.09000 * 115.54879 * 0.58769 * 8 7 6 35 35 H 1.09003 * 117.49744 * 214.97752 * 9 8 7 36 36 H 1.09002 * 117.49910 * 359.97438 * 9 8 7 37 37 H 1.09000 * 117.50096 * 359.97438 * 10 8 7 38 38 H 1.09008 * 117.49939 * 144.97255 * 10 8 7 39 39 H 1.09002 * 112.94104 * 168.43085 * 14 2 1 40 40 H 1.09000 * 113.75791 * 336.23986 * 15 14 2 41 41 H 1.08997 * 113.76177 * 107.60197 * 15 14 2 42 42 H 1.09001 * 109.47576 * 190.64539 * 17 16 15 43 43 H 1.09006 * 109.47328 * 310.64305 * 17 16 15 44 44 H 0.96994 * 120.00090 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99892 * 180.02562 * 24 23 21 46 46 H 1.08999 * 113.76471 * 220.99845 * 29 16 15 47 47 H 1.09004 * 113.85961 * 89.64133 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1682 -0.0651 5 6 1.4025 2.4452 0.0792 6 6 1.9670 3.7352 0.2187 7 6 0.9169 4.5888 0.2456 8 6 0.9866 6.0881 0.3813 9 6 -0.0722 6.9143 -0.3515 10 6 -0.1269 6.7784 1.1714 11 7 -0.2054 3.8459 0.1345 12 1 -1.1078 4.2016 0.1297 13 7 0.0944 2.6009 0.0327 14 6 2.1975 -1.2687 -0.0006 15 6 1.5292 -2.3696 -0.8437 16 7 1.8709 -3.2882 0.2648 17 6 0.7555 -4.1984 0.5571 18 6 0.6095 -5.1912 -0.5671 19 8 1.3610 -5.1453 -1.5182 20 7 -0.3562 -6.1301 -0.5160 21 6 -0.4887 -7.0336 -1.5385 22 1 0.1805 -6.9927 -2.3853 23 6 -1.4845 -8.0012 -1.4860 24 7 -2.2990 -8.0505 -0.4559 25 14 -1.6655 -9.2318 -2.8796 26 1 -0.4111 -10.0150 -3.0145 27 1 -2.7934 -10.1515 -2.5845 28 1 -1.9357 -8.5075 -4.1476 29 6 1.8972 -2.1581 1.2195 30 1 -0.3633 0.1058 -1.0221 31 1 -0.3633 -0.9382 0.4194 32 1 -0.3633 0.8323 0.6028 33 1 3.0153 3.9859 0.2883 34 1 1.9901 6.5073 0.4547 35 1 0.2347 7.8770 -0.7603 36 1 -0.8194 6.3735 -0.9324 37 1 -0.9102 6.1483 1.5927 38 1 0.1442 7.6516 1.7650 39 1 3.2616 -1.1448 -0.2018 40 1 0.4574 -2.2274 -0.9816 41 1 2.0533 -2.5896 -1.7737 42 1 0.9546 -4.7299 1.4877 43 1 -0.1656 -3.6241 0.6566 44 1 -0.9573 -6.1665 0.2443 45 1 -2.9939 -8.7262 -0.4191 46 1 2.7153 -2.2089 1.9379 47 1 0.9337 -1.9526 1.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269849206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:49 Heat of formation + Delta-G solvation = 61.746714 kcal Electronic energy + Delta-G solvation = -29527.589693 eV Core-core repulsion = 25327.880108 eV Total energy + Delta-G solvation = -4199.709585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.83239 -41.79147 -40.26301 -39.30878 -38.07967 -36.21734 -35.84286 -33.32336 -32.96793 -31.85396 -31.05310 -28.11220 -27.50027 -27.06008 -25.96212 -24.63141 -23.80476 -23.27242 -22.10708 -21.17687 -20.73263 -20.02520 -19.79464 -18.95929 -17.98909 -17.81183 -17.56429 -17.14651 -16.70757 -16.56463 -16.38519 -16.00738 -15.87462 -15.62489 -15.26454 -15.12536 -14.85822 -14.42504 -14.16581 -13.97986 -13.67899 -13.57300 -13.50913 -13.39243 -13.21251 -13.11168 -12.87391 -12.46599 -12.43979 -12.20200 -12.13583 -12.04405 -11.87147 -11.67452 -11.50128 -11.45267 -11.21581 -10.49186 -10.35017 -10.02136 -9.80537 -9.79096 -9.71688 -8.46915 -5.95447 0.41099 0.96646 1.39088 1.41188 1.51842 1.62041 2.00016 2.04325 2.21365 2.28878 2.81199 3.00413 3.18483 3.19238 3.24467 3.43214 3.47792 3.70318 3.77368 3.98927 4.03588 4.08370 4.14901 4.19537 4.23629 4.37135 4.40047 4.52295 4.55123 4.61227 4.70335 4.75764 4.76886 4.79265 4.94985 4.99974 5.00925 5.14353 5.19488 5.22997 5.29476 5.40364 5.43080 5.83593 6.00077 6.04027 6.23654 6.59940 6.74138 7.01422 7.12401 7.55294 8.11517 8.70166 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.001780 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.640432 B =15725.155740 C =16397.508553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.597 3.403 4 O -0.569 6.569 5 C -0.030 4.030 6 C -0.193 4.193 7 C 0.068 3.932 8 C -0.105 4.105 9 C -0.167 4.167 10 C -0.164 4.164 11 N -0.367 5.367 12 H 0.458 0.542 13 N -0.254 5.254 14 C 0.123 3.877 15 C 0.014 3.986 16 N -0.475 5.475 17 C 0.026 3.974 18 C 0.439 3.561 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.272 1.272 29 C 0.003 3.997 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.107 0.893 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 32.364 7.518 33.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.385 3.615 4 O -0.447 6.447 5 C -0.189 4.189 6 C -0.221 4.221 7 C -0.058 4.058 8 C -0.125 4.125 9 C -0.204 4.204 10 C -0.201 4.201 11 N -0.083 5.083 12 H 0.305 0.695 13 N -0.091 5.091 14 C 0.018 3.982 15 C -0.116 4.116 16 N -0.198 5.198 17 C -0.105 4.105 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.197 1.197 29 C -0.126 4.126 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.215 31.149 6.748 31.895 hybrid contribution -0.791 -0.179 -0.317 0.871 sum -2.006 30.970 6.430 31.694 Atomic orbital electron populations 1.22234 0.77088 1.04383 1.03236 1.47779 1.08352 1.04586 1.71340 1.17336 0.85922 0.82559 0.75654 1.90763 1.14437 1.87255 1.52197 1.21661 0.90492 0.94810 1.11899 1.21573 1.00888 0.89892 1.09782 1.20726 0.85902 0.94597 1.04568 1.20664 0.98812 0.84425 1.08617 1.23205 1.00078 1.02045 0.95067 1.23207 0.99223 1.03072 0.94589 1.43435 1.10264 1.02995 1.51651 0.69454 1.73685 1.15460 1.00418 1.19579 1.23004 0.97949 0.80763 0.96461 1.24181 1.00163 0.90419 0.96826 1.68347 1.36993 1.09873 1.04614 1.22347 0.94944 0.95604 0.97630 1.20724 0.82610 0.84568 0.89427 1.90506 1.46706 1.75635 1.37649 1.41905 1.29797 1.27934 1.21300 1.19610 1.15769 1.09886 1.01134 0.90491 1.26006 0.95027 0.99658 1.00417 1.69657 1.19187 1.36380 1.30719 0.85010 0.78048 0.77612 0.77790 1.19901 1.19342 1.19748 1.24528 1.03767 0.88403 0.95903 0.92303 0.90468 0.87534 0.81965 0.84074 0.86416 0.88395 0.88257 0.86338 0.86835 0.90315 0.91119 0.86939 0.89990 0.76932 0.91271 0.87460 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 8.35 127.77 1.07 2.55 16 2 N -0.59 -15.20 3.09 -830.39 -2.57 -17.77 16 3 C 0.60 17.15 7.68 86.75 0.67 17.82 16 4 O -0.57 -19.95 16.41 -3.94 -0.06 -20.02 16 5 C -0.03 -0.69 6.82 42.45 0.29 -0.40 16 6 C -0.19 -3.76 10.73 22.41 0.24 -3.52 16 7 C 0.07 0.87 6.64 41.40 0.28 1.15 16 8 C -0.11 -0.68 6.26 -11.54 -0.07 -0.75 16 9 C -0.17 -0.52 10.22 30.59 0.31 -0.21 16 10 C -0.16 -0.46 10.22 30.59 0.31 -0.14 16 11 N -0.37 -4.33 6.80 -47.93 -0.33 -4.65 16 12 H 0.46 2.11 8.96 -219.99 -1.97 0.13 16 13 N -0.25 -4.67 8.76 -48.18 -0.42 -5.09 16 14 C 0.12 3.49 4.40 46.56 0.20 3.70 16 15 C 0.01 0.46 6.14 86.40 0.53 0.99 16 16 N -0.47 -16.11 5.95 -912.82 -5.43 -21.54 16 17 C 0.03 0.92 5.31 85.56 0.45 1.37 16 18 C 0.44 21.24 7.59 87.65 0.67 21.90 16 19 O -0.62 -35.11 15.13 -3.08 -0.05 -35.16 16 20 N -0.57 -29.52 5.29 -306.97 -1.62 -31.14 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 25 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.00 0.08 7.47 86.41 0.65 0.73 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.44 6.14 -2.39 -0.01 1.42 16 32 H 0.11 1.96 5.35 -2.39 -0.01 1.95 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.11 3.64 7.22 -2.39 -0.02 3.63 16 40 H 0.08 2.47 6.22 -2.39 -0.01 2.45 16 41 H 0.07 2.75 8.09 -2.39 -0.02 2.73 16 42 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.08 2.38 7.69 -2.38 -0.02 2.36 16 44 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.10 1.97 6.72 -2.38 -0.02 1.96 16 Total: -1.00 -77.53 391.33 -2.96 -80.49 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -1.67 Total: 32.10 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.87 Total: 26.68 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -10.08 Total: -129.40 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.11 Total: -55.18 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -77.53 -2.96 -80.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269849206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.240 kcal (2) G-P(sol) polarization free energy of solvation -77.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds